Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01993

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01992 and CCNA_01993 are separated by 17 nucleotidesCCNA_01993 and CCNA_01994 overlap by 59 nucleotides CCNA_01992: CCNA_01992 - beta-barrel assembly machine (BAM) protein BamA, at 2,137,316 to 2,139,679 _01992 CCNA_01993: CCNA_01993 - membrane endopeptidase MmpA, at 2,139,697 to 2,140,974 _01993 CCNA_01994: CCNA_01994 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,140,916 to 2,142,115 _01994 Position (kb) 2139 2140 2141Strain fitness (log2 ratio) -1 0 1at 2139.756 kb on - strandat 2139.786 kb on - strandat 2139.792 kb on - strandat 2139.807 kb on - strandat 2140.069 kb on - strand, within CCNA_01993at 2140.074 kb on - strand, within CCNA_01993at 2140.156 kb on - strand, within CCNA_01993at 2140.253 kb on - strand, within CCNA_01993at 2140.277 kb on - strand, within CCNA_01993at 2140.344 kb on - strand, within CCNA_01993at 2140.503 kb on - strand, within CCNA_01993at 2140.808 kb on + strand, within CCNA_01993at 2140.808 kb on + strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.816 kb on - strand, within CCNA_01993at 2140.833 kb on - strand, within CCNA_01993at 2140.922 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,139,756 - -0.7
2,139,786 - -0.1
2,139,792 - +0.7
2,139,807 - +0.3
2,140,069 - CCNA_01993 0.29 +1.2
2,140,074 - CCNA_01993 0.29 +0.3
2,140,156 - CCNA_01993 0.36 +1.3
2,140,253 - CCNA_01993 0.44 +0.3
2,140,277 - CCNA_01993 0.45 -0.8
2,140,344 - CCNA_01993 0.51 +0.1
2,140,503 - CCNA_01993 0.63 +1.6
2,140,808 + CCNA_01993 0.87 +1.0
2,140,808 + CCNA_01993 0.87 +0.2
2,140,816 - CCNA_01993 0.88 +1.3
2,140,816 - CCNA_01993 0.88 +1.1
2,140,816 - CCNA_01993 0.88 -0.2
2,140,816 - CCNA_01993 0.88 -1.0
2,140,816 - CCNA_01993 0.88 +0.7
2,140,816 - CCNA_01993 0.88 +1.4
2,140,816 - CCNA_01993 0.88 +0.8
2,140,816 - CCNA_01993 0.88 +1.7
2,140,833 - CCNA_01993 0.89 +0.4
2,140,922 - -0.7

Or see this region's nucleotide sequence