Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01972 and CCNA_01973 are separated by 22 nucleotides CCNA_01973 and CCNA_01974 are separated by 115 nucleotides CCNA_01974 and CCNA_01975 are separated by 8 nucleotides CCNA_01975 and CCNA_01976 overlap by 4 nucleotides CCNA_01976 and CCNA_01977 are separated by 95 nucleotides
CCNA_01972: CCNA_01972 - anthranilate synthase component I, at 2,117,381 to 2,118,922
_01972
CCNA_01973: CCNA_01973 - hypothetical protein, at 2,118,945 to 2,119,154
_01973
CCNA_01974: CCNA_01974 - anthranilate synthase component II/para-aminobenzoate synthase glutamine amidotransferase component II, at 2,119,270 to 2,119,866
_01974
CCNA_01975: CCNA_01975 - anthranilate phosphoribosyltransferase, at 2,119,875 to 2,120,900
_01975
CCNA_01976: CCNA_01976 - Indole-3-glycerol phosphate synthase, at 2,120,897 to 2,121,685
_01976
CCNA_01977: CCNA_01977 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,121,781 to 2,122,371
_01977
Position (kb)
2119
2120
2121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2118.902 kb on - strand at 2118.904 kb on + strand at 2118.983 kb on - strand, within CCNA_01973 at 2118.984 kb on - strand, within CCNA_01973 at 2119.002 kb on + strand, within CCNA_01973 at 2119.020 kb on + strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.093 kb on - strand, within CCNA_01973 at 2119.107 kb on + strand, within CCNA_01973 at 2119.128 kb on + strand, within CCNA_01973 at 2119.128 kb on + strand, within CCNA_01973 at 2119.172 kb on - strand at 2119.183 kb on + strand at 2119.248 kb on - strand at 2119.288 kb on + strand at 2119.296 kb on - strand at 2119.296 kb on - strand at 2119.366 kb on + strand, within CCNA_01974 at 2119.432 kb on - strand, within CCNA_01974 at 2119.432 kb on - strand, within CCNA_01974 at 2119.464 kb on + strand, within CCNA_01974 at 2119.464 kb on + strand, within CCNA_01974 at 2119.470 kb on - strand, within CCNA_01974 at 2119.472 kb on - strand, within CCNA_01974 at 2119.505 kb on + strand, within CCNA_01974 at 2119.526 kb on + strand, within CCNA_01974 at 2119.530 kb on + strand, within CCNA_01974 at 2119.572 kb on - strand, within CCNA_01974 at 2119.611 kb on + strand, within CCNA_01974 at 2119.618 kb on + strand, within CCNA_01974 at 2119.619 kb on - strand, within CCNA_01974 at 2119.632 kb on + strand, within CCNA_01974 at 2119.661 kb on - strand, within CCNA_01974 at 2119.678 kb on - strand, within CCNA_01974 at 2119.688 kb on + strand, within CCNA_01974 at 2119.696 kb on - strand, within CCNA_01974 at 2119.722 kb on + strand, within CCNA_01974 at 2119.737 kb on + strand, within CCNA_01974 at 2119.767 kb on + strand, within CCNA_01974 at 2119.825 kb on + strand at 2119.868 kb on - strand at 2119.868 kb on - strand at 2119.886 kb on + strand at 2119.917 kb on + strand at 2119.925 kb on - strand at 2120.093 kb on + strand, within CCNA_01975 at 2120.095 kb on + strand, within CCNA_01975 at 2120.141 kb on - strand, within CCNA_01975 at 2120.156 kb on - strand, within CCNA_01975 at 2120.187 kb on + strand, within CCNA_01975 at 2120.247 kb on + strand, within CCNA_01975 at 2120.309 kb on - strand, within CCNA_01975 at 2120.400 kb on + strand, within CCNA_01975 at 2120.400 kb on + strand, within CCNA_01975 at 2120.409 kb on - strand, within CCNA_01975 at 2120.410 kb on - strand, within CCNA_01975 at 2120.496 kb on + strand, within CCNA_01975 at 2120.503 kb on - strand, within CCNA_01975 at 2120.539 kb on + strand, within CCNA_01975 at 2120.540 kb on - strand, within CCNA_01975 at 2120.544 kb on + strand, within CCNA_01975 at 2120.637 kb on + strand, within CCNA_01975 at 2120.642 kb on + strand, within CCNA_01975 at 2120.661 kb on + strand, within CCNA_01975 at 2120.705 kb on - strand, within CCNA_01975 at 2120.758 kb on - strand, within CCNA_01975 at 2120.787 kb on + strand, within CCNA_01975 at 2120.794 kb on - strand, within CCNA_01975 at 2120.834 kb on - strand at 2120.989 kb on + strand, within CCNA_01976 at 2121.027 kb on + strand, within CCNA_01976 at 2121.049 kb on + strand, within CCNA_01976 at 2121.062 kb on - strand, within CCNA_01976 at 2121.165 kb on + strand, within CCNA_01976 at 2121.171 kb on - strand, within CCNA_01976 at 2121.295 kb on - strand, within CCNA_01976 at 2121.320 kb on - strand, within CCNA_01976 at 2121.367 kb on - strand, within CCNA_01976 at 2121.407 kb on + strand, within CCNA_01976 at 2121.426 kb on - strand, within CCNA_01976 at 2121.452 kb on + strand, within CCNA_01976 at 2121.479 kb on + strand, within CCNA_01976 at 2121.585 kb on - strand, within CCNA_01976 at 2121.641 kb on - strand at 2121.745 kb on - strand at 2121.786 kb on - strand at 2121.791 kb on - strand at 2121.804 kb on + strand at 2121.837 kb on + strand at 2121.895 kb on + strand, within CCNA_01977
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,118,902 - -0.6 2,118,904 + +0.0 2,118,983 - CCNA_01973 0.18 +0.2 2,118,984 - CCNA_01973 0.19 +0.0 2,119,002 + CCNA_01973 0.27 +0.5 2,119,020 + CCNA_01973 0.36 -0.4 2,119,093 - CCNA_01973 0.70 -0.7 2,119,093 - CCNA_01973 0.70 +2.2 2,119,093 - CCNA_01973 0.70 +0.4 2,119,107 + CCNA_01973 0.77 -0.6 2,119,128 + CCNA_01973 0.87 -1.5 2,119,128 + CCNA_01973 0.87 -1.3 2,119,172 - +0.5 2,119,183 + +0.4 2,119,248 - +0.3 2,119,288 + +0.7 2,119,296 - -0.4 2,119,296 - -1.3 2,119,366 + CCNA_01974 0.16 +0.3 2,119,432 - CCNA_01974 0.27 -0.1 2,119,432 - CCNA_01974 0.27 -0.3 2,119,464 + CCNA_01974 0.32 +0.4 2,119,464 + CCNA_01974 0.32 +0.3 2,119,470 - CCNA_01974 0.34 -0.9 2,119,472 - CCNA_01974 0.34 -0.5 2,119,505 + CCNA_01974 0.39 +1.0 2,119,526 + CCNA_01974 0.43 -1.7 2,119,530 + CCNA_01974 0.44 -0.2 2,119,572 - CCNA_01974 0.51 +0.5 2,119,611 + CCNA_01974 0.57 -2.3 2,119,618 + CCNA_01974 0.58 +0.5 2,119,619 - CCNA_01974 0.58 -0.9 2,119,632 + CCNA_01974 0.61 +1.6 2,119,661 - CCNA_01974 0.65 +1.0 2,119,678 - CCNA_01974 0.68 -0.8 2,119,688 + CCNA_01974 0.70 -0.3 2,119,696 - CCNA_01974 0.71 -0.5 2,119,722 + CCNA_01974 0.76 -0.5 2,119,737 + CCNA_01974 0.78 +0.4 2,119,767 + CCNA_01974 0.83 +1.5 2,119,825 + +0.5 2,119,868 - -1.1 2,119,868 - +1.2 2,119,886 + +0.3 2,119,917 + +0.0 2,119,925 - -0.5 2,120,093 + CCNA_01975 0.21 +0.3 2,120,095 + CCNA_01975 0.21 +0.4 2,120,141 - CCNA_01975 0.26 -0.3 2,120,156 - CCNA_01975 0.27 +0.7 2,120,187 + CCNA_01975 0.30 +2.2 2,120,247 + CCNA_01975 0.36 +1.1 2,120,309 - CCNA_01975 0.42 -2.2 2,120,400 + CCNA_01975 0.51 +0.3 2,120,400 + CCNA_01975 0.51 +0.3 2,120,409 - CCNA_01975 0.52 +1.0 2,120,410 - CCNA_01975 0.52 +0.4 2,120,496 + CCNA_01975 0.61 +0.5 2,120,503 - CCNA_01975 0.61 -0.3 2,120,539 + CCNA_01975 0.65 +0.2 2,120,540 - CCNA_01975 0.65 -1.4 2,120,544 + CCNA_01975 0.65 +0.3 2,120,637 + CCNA_01975 0.74 +0.8 2,120,642 + CCNA_01975 0.75 +0.7 2,120,661 + CCNA_01975 0.77 +0.9 2,120,705 - CCNA_01975 0.81 -0.2 2,120,758 - CCNA_01975 0.86 -0.0 2,120,787 + CCNA_01975 0.89 +0.4 2,120,794 - CCNA_01975 0.90 -1.9 2,120,834 - -0.8 2,120,989 + CCNA_01976 0.12 -0.8 2,121,027 + CCNA_01976 0.16 -0.4 2,121,049 + CCNA_01976 0.19 -0.1 2,121,062 - CCNA_01976 0.21 +0.1 2,121,165 + CCNA_01976 0.34 +1.2 2,121,171 - CCNA_01976 0.35 +2.1 2,121,295 - CCNA_01976 0.50 +2.2 2,121,320 - CCNA_01976 0.54 -0.8 2,121,367 - CCNA_01976 0.60 -1.5 2,121,407 + CCNA_01976 0.65 +0.3 2,121,426 - CCNA_01976 0.67 +0.6 2,121,452 + CCNA_01976 0.70 +1.0 2,121,479 + CCNA_01976 0.74 +0.5 2,121,585 - CCNA_01976 0.87 +0.1 2,121,641 - -0.4 2,121,745 - -0.0 2,121,786 - -0.6 2,121,791 - -0.7 2,121,804 + +0.3 2,121,837 + -0.5 2,121,895 + CCNA_01977 0.19 -0.4
Or see this region's nucleotide sequence