Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01929

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01927 and CCNA_01928 overlap by 14 nucleotidesCCNA_01928 and CCNA_01929 overlap by 4 nucleotidesCCNA_01929 and CCNA_01930 are separated by 0 nucleotides CCNA_01927: CCNA_01927 - enoyl-CoA hydratase, at 2,073,818 to 2,074,621 _01927 CCNA_01928: CCNA_01928 - conserved ACT domain protein, at 2,074,608 to 2,075,018 _01928 CCNA_01929: CCNA_01929 - hypothetical protein, at 2,075,015 to 2,075,419 _01929 CCNA_01930: CCNA_01930 - ADP-heptose LPS heptosyltransferase, at 2,075,420 to 2,076,391 _01930 Position (kb) 2075 2076Strain fitness (log2 ratio) -2 -1 0 1 2at 2074.148 kb on + strand, within CCNA_01927at 2074.148 kb on + strand, within CCNA_01927at 2074.148 kb on + strand, within CCNA_01927at 2074.177 kb on - strand, within CCNA_01927at 2074.232 kb on - strand, within CCNA_01927at 2074.256 kb on - strand, within CCNA_01927at 2074.257 kb on - strand, within CCNA_01927at 2074.279 kb on - strand, within CCNA_01927at 2074.436 kb on - strand, within CCNA_01927at 2074.446 kb on - strand, within CCNA_01927at 2074.446 kb on - strand, within CCNA_01927at 2074.485 kb on - strand, within CCNA_01927at 2074.485 kb on - strand, within CCNA_01927at 2074.485 kb on - strand, within CCNA_01927at 2074.486 kb on - strand, within CCNA_01927at 2074.496 kb on - strand, within CCNA_01927at 2074.513 kb on + strand, within CCNA_01927at 2074.532 kb on + strand, within CCNA_01927at 2074.586 kb on + strandat 2074.594 kb on - strandat 2074.604 kb on + strandat 2074.606 kb on + strandat 2074.614 kb on - strandat 2074.614 kb on - strandat 2074.632 kb on - strandat 2074.637 kb on + strandat 2074.679 kb on - strand, within CCNA_01928at 2074.688 kb on - strand, within CCNA_01928at 2074.698 kb on + strand, within CCNA_01928at 2074.769 kb on - strand, within CCNA_01928at 2074.784 kb on - strand, within CCNA_01928at 2074.784 kb on - strand, within CCNA_01928at 2074.803 kb on + strand, within CCNA_01928at 2074.803 kb on + strand, within CCNA_01928at 2074.803 kb on + strand, within CCNA_01928at 2074.803 kb on + strand, within CCNA_01928at 2074.811 kb on - strand, within CCNA_01928at 2074.854 kb on + strand, within CCNA_01928at 2074.863 kb on + strand, within CCNA_01928at 2075.026 kb on - strandat 2075.228 kb on + strand, within CCNA_01929at 2075.228 kb on + strand, within CCNA_01929at 2075.261 kb on - strand, within CCNA_01929at 2075.360 kb on - strand, within CCNA_01929at 2075.394 kb on + strandat 2075.412 kb on - strandat 2075.461 kb on - strandat 2075.462 kb on - strandat 2075.654 kb on - strand, within CCNA_01930at 2075.679 kb on + strand, within CCNA_01930at 2075.714 kb on - strand, within CCNA_01930at 2075.790 kb on + strand, within CCNA_01930at 2075.829 kb on - strand, within CCNA_01930at 2075.829 kb on - strand, within CCNA_01930at 2075.846 kb on + strand, within CCNA_01930at 2075.849 kb on - strand, within CCNA_01930at 2075.855 kb on - strand, within CCNA_01930at 2075.929 kb on + strand, within CCNA_01930at 2075.938 kb on + strand, within CCNA_01930at 2075.947 kb on - strand, within CCNA_01930at 2075.947 kb on - strand, within CCNA_01930at 2075.952 kb on - strand, within CCNA_01930at 2075.966 kb on - strand, within CCNA_01930at 2075.973 kb on + strand, within CCNA_01930at 2076.127 kb on + strand, within CCNA_01930at 2076.151 kb on + strand, within CCNA_01930at 2076.159 kb on - strand, within CCNA_01930at 2076.202 kb on + strand, within CCNA_01930at 2076.244 kb on + strand, within CCNA_01930at 2076.244 kb on + strand, within CCNA_01930at 2076.258 kb on + strand, within CCNA_01930at 2076.258 kb on + strand, within CCNA_01930at 2076.266 kb on - strand, within CCNA_01930at 2076.313 kb on + strandat 2076.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,074,148 + CCNA_01927 0.41 +0.3
2,074,148 + CCNA_01927 0.41 +1.4
2,074,148 + CCNA_01927 0.41 +0.7
2,074,177 - CCNA_01927 0.45 -0.1
2,074,232 - CCNA_01927 0.51 +0.6
2,074,256 - CCNA_01927 0.54 -0.7
2,074,257 - CCNA_01927 0.55 -1.0
2,074,279 - CCNA_01927 0.57 +0.2
2,074,436 - CCNA_01927 0.77 -0.6
2,074,446 - CCNA_01927 0.78 -0.3
2,074,446 - CCNA_01927 0.78 -1.5
2,074,485 - CCNA_01927 0.83 -0.5
2,074,485 - CCNA_01927 0.83 +0.0
2,074,485 - CCNA_01927 0.83 -1.8
2,074,486 - CCNA_01927 0.83 +0.2
2,074,496 - CCNA_01927 0.84 +0.3
2,074,513 + CCNA_01927 0.86 +0.7
2,074,532 + CCNA_01927 0.89 +0.6
2,074,586 + -0.2
2,074,594 - +0.3
2,074,604 + -0.1
2,074,606 + +0.5
2,074,614 - -0.4
2,074,614 - +0.4
2,074,632 - -0.5
2,074,637 + +0.1
2,074,679 - CCNA_01928 0.17 -1.4
2,074,688 - CCNA_01928 0.19 -1.5
2,074,698 + CCNA_01928 0.22 -1.5
2,074,769 - CCNA_01928 0.39 +1.2
2,074,784 - CCNA_01928 0.43 -1.0
2,074,784 - CCNA_01928 0.43 +0.3
2,074,803 + CCNA_01928 0.47 +0.5
2,074,803 + CCNA_01928 0.47 -1.8
2,074,803 + CCNA_01928 0.47 +1.5
2,074,803 + CCNA_01928 0.47 +1.7
2,074,811 - CCNA_01928 0.49 +2.4
2,074,854 + CCNA_01928 0.60 -1.1
2,074,863 + CCNA_01928 0.62 -0.2
2,075,026 - +0.0
2,075,228 + CCNA_01929 0.53 -0.5
2,075,228 + CCNA_01929 0.53 +0.3
2,075,261 - CCNA_01929 0.61 +1.3
2,075,360 - CCNA_01929 0.85 +0.2
2,075,394 + +0.3
2,075,412 - +1.0
2,075,461 - -0.2
2,075,462 - -1.8
2,075,654 - CCNA_01930 0.24 -0.3
2,075,679 + CCNA_01930 0.27 +0.4
2,075,714 - CCNA_01930 0.30 -1.1
2,075,790 + CCNA_01930 0.38 +0.8
2,075,829 - CCNA_01930 0.42 +0.3
2,075,829 - CCNA_01930 0.42 -0.4
2,075,846 + CCNA_01930 0.44 -0.7
2,075,849 - CCNA_01930 0.44 +0.6
2,075,855 - CCNA_01930 0.45 -0.2
2,075,929 + CCNA_01930 0.52 -0.8
2,075,938 + CCNA_01930 0.53 -0.3
2,075,947 - CCNA_01930 0.54 -0.3
2,075,947 - CCNA_01930 0.54 -0.8
2,075,952 - CCNA_01930 0.55 +0.1
2,075,966 - CCNA_01930 0.56 -0.1
2,075,973 + CCNA_01930 0.57 -0.5
2,076,127 + CCNA_01930 0.73 +0.4
2,076,151 + CCNA_01930 0.75 -0.8
2,076,159 - CCNA_01930 0.76 -0.4
2,076,202 + CCNA_01930 0.80 +0.2
2,076,244 + CCNA_01930 0.85 +0.8
2,076,244 + CCNA_01930 0.85 -0.4
2,076,258 + CCNA_01930 0.86 -0.0
2,076,258 + CCNA_01930 0.86 -0.8
2,076,266 - CCNA_01930 0.87 -0.0
2,076,313 + -0.2
2,076,386 + -1.7

Or see this region's nucleotide sequence