Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01921 and CCNA_01922 are separated by 23 nucleotides CCNA_01922 and CCNA_01923 are separated by 121 nucleotides CCNA_01923 and CCNA_01924 are separated by 74 nucleotides
CCNA_01921: CCNA_01921 - Sdh5 family flavination protein, at 2,066,987 to 2,067,280
_01921
CCNA_01922: CCNA_01922 - SAM-dependent methyltransferase, at 2,067,304 to 2,068,035
_01922
CCNA_01923: CCNA_01923 - ATP-dependent RNA helicase, at 2,068,157 to 2,069,710
_01923
CCNA_01924: CCNA_01924 - capsular polysaccharide biosynthesis protein, at 2,069,785 to 2,070,936
_01924
Position (kb)
2068
2069
2070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2067.275 kb on + strand at 2067.283 kb on - strand at 2067.290 kb on + strand at 2067.307 kb on + strand at 2067.308 kb on + strand at 2067.334 kb on + strand at 2067.342 kb on - strand at 2067.349 kb on + strand at 2067.357 kb on - strand at 2067.364 kb on + strand at 2067.410 kb on + strand, within CCNA_01922 at 2067.420 kb on + strand, within CCNA_01922 at 2067.445 kb on - strand, within CCNA_01922 at 2067.486 kb on + strand, within CCNA_01922 at 2067.496 kb on - strand, within CCNA_01922 at 2067.517 kb on + strand, within CCNA_01922 at 2067.525 kb on - strand, within CCNA_01922 at 2067.600 kb on + strand, within CCNA_01922 at 2067.627 kb on + strand, within CCNA_01922 at 2067.641 kb on - strand, within CCNA_01922 at 2067.776 kb on - strand, within CCNA_01922 at 2067.815 kb on - strand, within CCNA_01922 at 2067.815 kb on - strand, within CCNA_01922 at 2067.856 kb on - strand, within CCNA_01922 at 2067.879 kb on - strand, within CCNA_01922 at 2067.904 kb on + strand, within CCNA_01922 at 2067.917 kb on - strand, within CCNA_01922 at 2067.927 kb on - strand, within CCNA_01922 at 2067.950 kb on + strand, within CCNA_01922 at 2067.958 kb on - strand, within CCNA_01922 at 2067.958 kb on - strand, within CCNA_01922 at 2067.958 kb on - strand, within CCNA_01922 at 2067.977 kb on - strand at 2067.985 kb on - strand at 2068.103 kb on - strand at 2068.138 kb on - strand at 2068.140 kb on + strand at 2068.173 kb on + strand at 2068.193 kb on + strand at 2068.194 kb on + strand at 2068.213 kb on - strand at 2068.217 kb on + strand at 2068.227 kb on - strand at 2068.252 kb on - strand at 2068.279 kb on - strand at 2068.279 kb on - strand at 2068.284 kb on - strand at 2068.297 kb on + strand at 2068.300 kb on - strand at 2068.300 kb on - strand at 2068.319 kb on + strand, within CCNA_01923 at 2068.334 kb on - strand, within CCNA_01923 at 2068.352 kb on - strand, within CCNA_01923 at 2068.367 kb on - strand, within CCNA_01923 at 2068.387 kb on + strand, within CCNA_01923 at 2068.387 kb on + strand, within CCNA_01923 at 2068.387 kb on + strand, within CCNA_01923 at 2068.395 kb on - strand, within CCNA_01923 at 2068.431 kb on + strand, within CCNA_01923 at 2068.431 kb on + strand, within CCNA_01923 at 2068.459 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.462 kb on + strand, within CCNA_01923 at 2068.470 kb on - strand, within CCNA_01923 at 2068.470 kb on - strand, within CCNA_01923 at 2068.480 kb on - strand, within CCNA_01923 at 2068.583 kb on + strand, within CCNA_01923 at 2068.598 kb on + strand, within CCNA_01923 at 2068.606 kb on - strand, within CCNA_01923 at 2068.657 kb on + strand, within CCNA_01923 at 2068.665 kb on - strand, within CCNA_01923 at 2068.668 kb on + strand, within CCNA_01923 at 2068.684 kb on + strand, within CCNA_01923 at 2068.700 kb on + strand, within CCNA_01923 at 2068.702 kb on + strand, within CCNA_01923 at 2068.702 kb on + strand, within CCNA_01923 at 2068.710 kb on - strand, within CCNA_01923 at 2068.769 kb on - strand, within CCNA_01923 at 2068.814 kb on - strand, within CCNA_01923 at 2068.984 kb on - strand, within CCNA_01923 at 2068.987 kb on + strand, within CCNA_01923 at 2069.011 kb on + strand, within CCNA_01923 at 2069.061 kb on + strand, within CCNA_01923 at 2069.108 kb on + strand, within CCNA_01923 at 2069.108 kb on + strand, within CCNA_01923 at 2069.150 kb on - strand, within CCNA_01923 at 2069.194 kb on - strand, within CCNA_01923 at 2069.201 kb on - strand, within CCNA_01923 at 2069.201 kb on - strand, within CCNA_01923 at 2069.226 kb on + strand, within CCNA_01923 at 2069.233 kb on - strand, within CCNA_01923 at 2069.261 kb on - strand, within CCNA_01923 at 2069.275 kb on + strand, within CCNA_01923 at 2069.284 kb on + strand, within CCNA_01923 at 2069.298 kb on - strand, within CCNA_01923 at 2069.466 kb on + strand, within CCNA_01923 at 2069.586 kb on + strand at 2069.607 kb on + strand at 2069.615 kb on - strand at 2069.674 kb on + strand at 2069.700 kb on + strand at 2069.700 kb on + strand at 2069.708 kb on - strand at 2069.780 kb on + strand at 2069.809 kb on + strand at 2069.818 kb on + strand at 2069.818 kb on + strand at 2069.826 kb on - strand at 2069.888 kb on + strand at 2069.888 kb on + strand at 2069.901 kb on - strand, within CCNA_01924 at 2069.901 kb on - strand, within CCNA_01924 at 2069.917 kb on + strand, within CCNA_01924 at 2069.927 kb on - strand, within CCNA_01924 at 2069.934 kb on + strand, within CCNA_01924 at 2070.017 kb on + strand, within CCNA_01924 at 2070.022 kb on + strand, within CCNA_01924 at 2070.025 kb on - strand, within CCNA_01924 at 2070.030 kb on - strand, within CCNA_01924 at 2070.047 kb on + strand, within CCNA_01924 at 2070.060 kb on - strand, within CCNA_01924 at 2070.067 kb on + strand, within CCNA_01924 at 2070.100 kb on - strand, within CCNA_01924 at 2070.174 kb on - strand, within CCNA_01924 at 2070.218 kb on + strand, within CCNA_01924 at 2070.247 kb on + strand, within CCNA_01924 at 2070.254 kb on + strand, within CCNA_01924 at 2070.283 kb on + strand, within CCNA_01924 at 2070.357 kb on + strand, within CCNA_01924 at 2070.433 kb on - strand, within CCNA_01924 at 2070.444 kb on + strand, within CCNA_01924 at 2070.464 kb on - strand, within CCNA_01924 at 2070.501 kb on - strand, within CCNA_01924 at 2070.512 kb on + strand, within CCNA_01924 at 2070.512 kb on + strand, within CCNA_01924 at 2070.522 kb on - strand, within CCNA_01924 at 2070.568 kb on + strand, within CCNA_01924 at 2070.584 kb on + strand, within CCNA_01924 at 2070.621 kb on + strand, within CCNA_01924 at 2070.669 kb on - strand, within CCNA_01924 at 2070.697 kb on + strand, within CCNA_01924 at 2070.707 kb on - strand, within CCNA_01924
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 2,067,275 + -1.6 2,067,283 - -0.8 2,067,290 + +0.5 2,067,307 + -0.0 2,067,308 + +0.6 2,067,334 + +0.9 2,067,342 - -1.7 2,067,349 + -3.4 2,067,357 - -0.1 2,067,364 + -0.7 2,067,410 + CCNA_01922 0.14 -0.8 2,067,420 + CCNA_01922 0.16 +1.0 2,067,445 - CCNA_01922 0.19 +1.7 2,067,486 + CCNA_01922 0.25 -2.6 2,067,496 - CCNA_01922 0.26 -2.5 2,067,517 + CCNA_01922 0.29 -0.6 2,067,525 - CCNA_01922 0.30 +0.1 2,067,600 + CCNA_01922 0.40 -1.9 2,067,627 + CCNA_01922 0.44 -2.4 2,067,641 - CCNA_01922 0.46 +0.4 2,067,776 - CCNA_01922 0.64 -0.1 2,067,815 - CCNA_01922 0.70 +0.2 2,067,815 - CCNA_01922 0.70 -0.9 2,067,856 - CCNA_01922 0.75 -0.1 2,067,879 - CCNA_01922 0.79 -1.7 2,067,904 + CCNA_01922 0.82 +0.1 2,067,917 - CCNA_01922 0.84 +1.0 2,067,927 - CCNA_01922 0.85 -0.1 2,067,950 + CCNA_01922 0.88 -1.2 2,067,958 - CCNA_01922 0.89 +0.0 2,067,958 - CCNA_01922 0.89 -0.2 2,067,958 - CCNA_01922 0.89 +0.4 2,067,977 - -0.2 2,067,985 - -0.2 2,068,103 - -1.0 2,068,138 - +0.3 2,068,140 + +0.7 2,068,173 + +2.7 2,068,193 + +0.1 2,068,194 + +0.6 2,068,213 - +0.1 2,068,217 + +0.1 2,068,227 - -0.1 2,068,252 - -0.4 2,068,279 - -0.1 2,068,279 - -1.5 2,068,284 - -1.2 2,068,297 + +1.7 2,068,300 - +2.0 2,068,300 - -0.6 2,068,319 + CCNA_01923 0.10 -0.8 2,068,334 - CCNA_01923 0.11 +0.4 2,068,352 - CCNA_01923 0.13 -0.3 2,068,367 - CCNA_01923 0.14 +0.4 2,068,387 + CCNA_01923 0.15 +0.5 2,068,387 + CCNA_01923 0.15 +0.1 2,068,387 + CCNA_01923 0.15 +0.5 2,068,395 - CCNA_01923 0.15 +0.4 2,068,431 + CCNA_01923 0.18 +0.8 2,068,431 + CCNA_01923 0.18 +0.5 2,068,459 + CCNA_01923 0.19 +0.2 2,068,462 + CCNA_01923 0.20 -1.0 2,068,462 + CCNA_01923 0.20 +0.9 2,068,462 + CCNA_01923 0.20 +1.4 2,068,462 + CCNA_01923 0.20 -1.6 2,068,462 + CCNA_01923 0.20 +0.6 2,068,462 + CCNA_01923 0.20 -0.4 2,068,462 + CCNA_01923 0.20 -0.0 2,068,470 - CCNA_01923 0.20 +0.2 2,068,470 - CCNA_01923 0.20 -0.6 2,068,480 - CCNA_01923 0.21 +1.2 2,068,583 + CCNA_01923 0.27 -0.6 2,068,598 + CCNA_01923 0.28 +0.2 2,068,606 - CCNA_01923 0.29 +0.9 2,068,657 + CCNA_01923 0.32 +1.0 2,068,665 - CCNA_01923 0.33 -2.4 2,068,668 + CCNA_01923 0.33 +0.5 2,068,684 + CCNA_01923 0.34 -0.1 2,068,700 + CCNA_01923 0.35 +1.2 2,068,702 + CCNA_01923 0.35 +1.2 2,068,702 + CCNA_01923 0.35 +0.1 2,068,710 - CCNA_01923 0.36 -0.4 2,068,769 - CCNA_01923 0.39 -0.2 2,068,814 - CCNA_01923 0.42 +0.3 2,068,984 - CCNA_01923 0.53 -0.0 2,068,987 + CCNA_01923 0.53 +0.6 2,069,011 + CCNA_01923 0.55 +0.5 2,069,061 + CCNA_01923 0.58 +0.7 2,069,108 + CCNA_01923 0.61 +0.7 2,069,108 + CCNA_01923 0.61 +0.5 2,069,150 - CCNA_01923 0.64 +2.4 2,069,194 - CCNA_01923 0.67 +0.7 2,069,201 - CCNA_01923 0.67 -0.2 2,069,201 - CCNA_01923 0.67 +0.1 2,069,226 + CCNA_01923 0.69 -0.1 2,069,233 - CCNA_01923 0.69 +0.3 2,069,261 - CCNA_01923 0.71 +1.6 2,069,275 + CCNA_01923 0.72 +0.5 2,069,284 + CCNA_01923 0.73 +0.4 2,069,298 - CCNA_01923 0.73 +0.1 2,069,466 + CCNA_01923 0.84 +0.7 2,069,586 + +0.1 2,069,607 + +0.4 2,069,615 - +0.4 2,069,674 + +0.6 2,069,700 + +1.1 2,069,700 + +0.9 2,069,708 - -0.5 2,069,780 + +0.0 2,069,809 + -0.8 2,069,818 + -1.0 2,069,818 + +1.3 2,069,826 - +0.6 2,069,888 + -2.6 2,069,888 + -1.2 2,069,901 - CCNA_01924 0.10 -0.5 2,069,901 - CCNA_01924 0.10 +0.2 2,069,917 + CCNA_01924 0.11 +0.4 2,069,927 - CCNA_01924 0.12 -0.4 2,069,934 + CCNA_01924 0.13 -0.9 2,070,017 + CCNA_01924 0.20 +1.0 2,070,022 + CCNA_01924 0.21 -1.2 2,070,025 - CCNA_01924 0.21 +2.1 2,070,030 - CCNA_01924 0.21 -0.3 2,070,047 + CCNA_01924 0.23 -0.9 2,070,060 - CCNA_01924 0.24 -0.6 2,070,067 + CCNA_01924 0.24 -1.2 2,070,100 - CCNA_01924 0.27 +0.2 2,070,174 - CCNA_01924 0.34 +1.0 2,070,218 + CCNA_01924 0.38 +1.5 2,070,247 + CCNA_01924 0.40 -1.5 2,070,254 + CCNA_01924 0.41 +0.3 2,070,283 + CCNA_01924 0.43 +0.7 2,070,357 + CCNA_01924 0.50 +0.5 2,070,433 - CCNA_01924 0.56 +0.4 2,070,444 + CCNA_01924 0.57 -1.0 2,070,464 - CCNA_01924 0.59 -1.2 2,070,501 - CCNA_01924 0.62 +0.2 2,070,512 + CCNA_01924 0.63 -0.8 2,070,512 + CCNA_01924 0.63 -0.2 2,070,522 - CCNA_01924 0.64 +0.7 2,070,568 + CCNA_01924 0.68 -0.9 2,070,584 + CCNA_01924 0.69 +0.7 2,070,621 + CCNA_01924 0.73 -2.4 2,070,669 - CCNA_01924 0.77 -0.7 2,070,697 + CCNA_01924 0.79 -0.2 2,070,707 - CCNA_01924 0.80 -0.2
Or see this region's nucleotide sequence