Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01896

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01895 and CCNA_01896 are separated by 473 nucleotidesCCNA_01896 and CCNA_01897 are separated by 270 nucleotides CCNA_01895: CCNA_01895 - transporter, major facilitator superfamily, at 2,037,657 to 2,039,096 _01895 CCNA_01896: CCNA_01896 - hypothetical protein, at 2,039,570 to 2,039,776 _01896 CCNA_01897: CCNA_01897 - metal-dependent hydrolase, at 2,040,047 to 2,040,853 _01897 Position (kb) 2039 2040Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2038.584 kb on + strand, within CCNA_01895at 2038.586 kb on - strand, within CCNA_01895at 2038.676 kb on - strand, within CCNA_01895at 2038.708 kb on + strand, within CCNA_01895at 2038.812 kb on + strand, within CCNA_01895at 2038.824 kb on + strand, within CCNA_01895at 2038.824 kb on + strand, within CCNA_01895at 2038.840 kb on + strand, within CCNA_01895at 2038.891 kb on + strand, within CCNA_01895at 2038.951 kb on + strand, within CCNA_01895at 2038.952 kb on + strand, within CCNA_01895at 2038.952 kb on + strand, within CCNA_01895at 2038.952 kb on + strand, within CCNA_01895at 2038.952 kb on + strand, within CCNA_01895at 2038.952 kb on + strand, within CCNA_01895at 2038.959 kb on - strandat 2038.960 kb on - strandat 2038.962 kb on + strandat 2038.970 kb on - strandat 2038.970 kb on - strandat 2038.992 kb on - strandat 2038.992 kb on - strandat 2039.011 kb on + strandat 2039.048 kb on - strandat 2039.081 kb on + strandat 2039.081 kb on - strandat 2039.108 kb on - strandat 2039.127 kb on + strandat 2039.208 kb on + strandat 2039.216 kb on - strandat 2039.240 kb on - strandat 2039.266 kb on + strandat 2039.266 kb on + strandat 2039.266 kb on - strandat 2039.266 kb on - strandat 2039.274 kb on - strandat 2039.274 kb on - strandat 2039.274 kb on - strandat 2039.293 kb on - strandat 2039.297 kb on + strandat 2039.305 kb on - strandat 2039.305 kb on - strandat 2039.305 kb on - strandat 2039.305 kb on - strandat 2039.351 kb on - strandat 2039.352 kb on + strandat 2039.360 kb on - strandat 2039.360 kb on - strandat 2039.360 kb on - strandat 2039.417 kb on - strandat 2039.440 kb on + strandat 2039.559 kb on - strandat 2039.618 kb on + strand, within CCNA_01896at 2039.738 kb on + strand, within CCNA_01896at 2039.744 kb on - strand, within CCNA_01896at 2039.797 kb on - strandat 2039.865 kb on - strandat 2039.891 kb on - strandat 2039.909 kb on - strandat 2039.910 kb on - strandat 2039.910 kb on - strandat 2039.910 kb on - strandat 2039.910 kb on - strandat 2039.935 kb on + strandat 2040.053 kb on - strandat 2040.148 kb on - strand, within CCNA_01897at 2040.203 kb on - strand, within CCNA_01897at 2040.203 kb on - strand, within CCNA_01897at 2040.224 kb on + strand, within CCNA_01897at 2040.275 kb on - strand, within CCNA_01897at 2040.275 kb on - strand, within CCNA_01897at 2040.278 kb on + strand, within CCNA_01897at 2040.303 kb on + strand, within CCNA_01897at 2040.311 kb on - strand, within CCNA_01897at 2040.311 kb on - strand, within CCNA_01897at 2040.311 kb on - strand, within CCNA_01897at 2040.311 kb on - strand, within CCNA_01897at 2040.475 kb on - strand, within CCNA_01897at 2040.480 kb on - strand, within CCNA_01897at 2040.480 kb on - strand, within CCNA_01897at 2040.481 kb on - strand, within CCNA_01897at 2040.498 kb on - strand, within CCNA_01897at 2040.499 kb on - strand, within CCNA_01897at 2040.581 kb on + strand, within CCNA_01897at 2040.608 kb on - strand, within CCNA_01897at 2040.645 kb on - strand, within CCNA_01897at 2040.652 kb on - strand, within CCNA_01897at 2040.658 kb on + strand, within CCNA_01897at 2040.766 kb on + strand, within CCNA_01897at 2040.766 kb on + strand, within CCNA_01897at 2040.774 kb on - strandat 2040.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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2,038,584 + CCNA_01895 0.64 -1.5
2,038,586 - CCNA_01895 0.65 +0.6
2,038,676 - CCNA_01895 0.71 +2.1
2,038,708 + CCNA_01895 0.73 +0.2
2,038,812 + CCNA_01895 0.80 -1.7
2,038,824 + CCNA_01895 0.81 -0.8
2,038,824 + CCNA_01895 0.81 +0.7
2,038,840 + CCNA_01895 0.82 +1.0
2,038,891 + CCNA_01895 0.86 +0.3
2,038,951 + CCNA_01895 0.90 -2.8
2,038,952 + CCNA_01895 0.90 +2.3
2,038,952 + CCNA_01895 0.90 +0.5
2,038,952 + CCNA_01895 0.90 +0.3
2,038,952 + CCNA_01895 0.90 -0.7
2,038,952 + CCNA_01895 0.90 +3.0
2,038,959 - +0.3
2,038,960 - -1.6
2,038,962 + -0.5
2,038,970 - -0.8
2,038,970 - -0.0
2,038,992 - +2.1
2,038,992 - -0.3
2,039,011 + -0.1
2,039,048 - -0.8
2,039,081 + +0.1
2,039,081 - -1.2
2,039,108 - -1.0
2,039,127 + -0.6
2,039,208 + -0.3
2,039,216 - -0.1
2,039,240 - +0.0
2,039,266 + -0.7
2,039,266 + +1.0
2,039,266 - +0.1
2,039,266 - -0.8
2,039,274 - -0.6
2,039,274 - -0.5
2,039,274 - +2.0
2,039,293 - -1.4
2,039,297 + -2.1
2,039,305 - +1.0
2,039,305 - +0.2
2,039,305 - -0.6
2,039,305 - -1.0
2,039,351 - -0.3
2,039,352 + +1.0
2,039,360 - -0.6
2,039,360 - -1.6
2,039,360 - +0.7
2,039,417 - -0.6
2,039,440 + -0.1
2,039,559 - -0.1
2,039,618 + CCNA_01896 0.23 +0.1
2,039,738 + CCNA_01896 0.81 -0.0
2,039,744 - CCNA_01896 0.84 -0.9
2,039,797 - -0.2
2,039,865 - -1.9
2,039,891 - +0.1
2,039,909 - -0.6
2,039,910 - +1.7
2,039,910 - -0.7
2,039,910 - -0.8
2,039,910 - +0.4
2,039,935 + +0.4
2,040,053 - +0.1
2,040,148 - CCNA_01897 0.13 +0.1
2,040,203 - CCNA_01897 0.19 +0.2
2,040,203 - CCNA_01897 0.19 +0.9
2,040,224 + CCNA_01897 0.22 +0.2
2,040,275 - CCNA_01897 0.28 +0.3
2,040,275 - CCNA_01897 0.28 -0.0
2,040,278 + CCNA_01897 0.29 -1.4
2,040,303 + CCNA_01897 0.32 +0.0
2,040,311 - CCNA_01897 0.33 +0.7
2,040,311 - CCNA_01897 0.33 +0.3
2,040,311 - CCNA_01897 0.33 +0.4
2,040,311 - CCNA_01897 0.33 +2.3
2,040,475 - CCNA_01897 0.53 +0.3
2,040,480 - CCNA_01897 0.54 -0.1
2,040,480 - CCNA_01897 0.54 -0.3
2,040,481 - CCNA_01897 0.54 +0.3
2,040,498 - CCNA_01897 0.56 +0.2
2,040,499 - CCNA_01897 0.56 -0.6
2,040,581 + CCNA_01897 0.66 -2.9
2,040,608 - CCNA_01897 0.70 -1.4
2,040,645 - CCNA_01897 0.74 +0.5
2,040,652 - CCNA_01897 0.75 -0.6
2,040,658 + CCNA_01897 0.76 -0.3
2,040,766 + CCNA_01897 0.89 -0.5
2,040,766 + CCNA_01897 0.89 +0.0
2,040,774 - -0.2
2,040,774 - +0.3

Or see this region's nucleotide sequence