Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01776

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01775 and CCNA_01776 are separated by 125 nucleotidesCCNA_01776 and CCNA_01777 are separated by 249 nucleotides CCNA_01775: CCNA_01775 - phosphoribosylformylglycinamidine cyclo-ligase, at 1,900,847 to 1,901,872 _01775 CCNA_01776: CCNA_01776 - ribonuclease D, at 1,901,998 to 1,903,167 _01776 CCNA_01777: CCNA_01777 - hybrid sensor histidine kinase/receiver domain protein, at 1,903,417 to 1,905,099 _01777 Position (kb) 1901 1902 1903 1904Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1901.000 kb on + strand, within CCNA_01775at 1901.013 kb on - strand, within CCNA_01775at 1901.023 kb on - strand, within CCNA_01775at 1901.122 kb on - strand, within CCNA_01775at 1901.235 kb on - strand, within CCNA_01775at 1901.251 kb on - strand, within CCNA_01775at 1901.349 kb on + strand, within CCNA_01775at 1901.453 kb on + strand, within CCNA_01775at 1901.504 kb on + strand, within CCNA_01775at 1901.504 kb on + strand, within CCNA_01775at 1901.577 kb on + strand, within CCNA_01775at 1901.608 kb on + strand, within CCNA_01775at 1901.627 kb on - strand, within CCNA_01775at 1901.736 kb on - strand, within CCNA_01775at 1901.739 kb on - strand, within CCNA_01775at 1901.775 kb on + strandat 1901.775 kb on + strandat 1901.800 kb on + strandat 1901.879 kb on + strandat 1901.892 kb on - strandat 1901.896 kb on + strandat 1901.897 kb on - strandat 1901.908 kb on + strandat 1901.949 kb on - strandat 1901.952 kb on + strandat 1901.959 kb on - strandat 1901.996 kb on + strandat 1902.857 kb on + strand, within CCNA_01776at 1903.132 kb on - strandat 1903.244 kb on - strandat 1903.343 kb on + strandat 1903.374 kb on - strandat 1903.381 kb on - strandat 1903.421 kb on + strandat 1903.426 kb on + strandat 1903.517 kb on + strandat 1903.517 kb on + strandat 1903.525 kb on - strandat 1903.527 kb on + strandat 1903.535 kb on - strandat 1903.545 kb on - strandat 1903.594 kb on + strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.602 kb on - strand, within CCNA_01777at 1903.608 kb on + strand, within CCNA_01777at 1903.645 kb on - strand, within CCNA_01777at 1903.759 kb on + strand, within CCNA_01777at 1903.772 kb on - strand, within CCNA_01777at 1903.774 kb on + strand, within CCNA_01777at 1903.789 kb on + strand, within CCNA_01777at 1903.811 kb on + strand, within CCNA_01777at 1903.819 kb on + strand, within CCNA_01777at 1903.933 kb on + strand, within CCNA_01777at 1903.938 kb on + strand, within CCNA_01777at 1903.953 kb on - strand, within CCNA_01777at 1904.032 kb on + strand, within CCNA_01777at 1904.059 kb on - strand, within CCNA_01777at 1904.114 kb on + strand, within CCNA_01777at 1904.122 kb on - strand, within CCNA_01777at 1904.137 kb on + strand, within CCNA_01777at 1904.165 kb on - strand, within CCNA_01777

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,901,000 + CCNA_01775 0.15 -1.5
1,901,013 - CCNA_01775 0.16 -0.5
1,901,023 - CCNA_01775 0.17 +1.0
1,901,122 - CCNA_01775 0.27 +0.2
1,901,235 - CCNA_01775 0.38 +1.6
1,901,251 - CCNA_01775 0.39 -0.5
1,901,349 + CCNA_01775 0.49 +0.2
1,901,453 + CCNA_01775 0.59 +1.1
1,901,504 + CCNA_01775 0.64 +0.7
1,901,504 + CCNA_01775 0.64 +0.5
1,901,577 + CCNA_01775 0.71 -0.2
1,901,608 + CCNA_01775 0.74 -0.2
1,901,627 - CCNA_01775 0.76 -0.8
1,901,736 - CCNA_01775 0.87 +1.8
1,901,739 - CCNA_01775 0.87 +0.5
1,901,775 + +0.1
1,901,775 + -1.7
1,901,800 + -1.2
1,901,879 + -3.3
1,901,892 - +0.3
1,901,896 + -0.6
1,901,897 - -0.1
1,901,908 + -1.7
1,901,949 - +1.0
1,901,952 + -1.1
1,901,959 - +0.5
1,901,996 + -0.5
1,902,857 + CCNA_01776 0.73 -1.0
1,903,132 - +0.6
1,903,244 - -0.3
1,903,343 + +0.5
1,903,374 - -1.4
1,903,381 - +0.1
1,903,421 + +0.4
1,903,426 + +0.7
1,903,517 + +0.9
1,903,517 + +0.4
1,903,525 - -1.8
1,903,527 + +1.3
1,903,535 - -3.1
1,903,545 - -1.0
1,903,594 + CCNA_01777 0.11 +0.2
1,903,602 - CCNA_01777 0.11 -0.6
1,903,602 - CCNA_01777 0.11 -0.9
1,903,602 - CCNA_01777 0.11 -1.1
1,903,608 + CCNA_01777 0.11 -0.1
1,903,645 - CCNA_01777 0.14 -0.4
1,903,759 + CCNA_01777 0.20 +0.0
1,903,772 - CCNA_01777 0.21 -0.9
1,903,774 + CCNA_01777 0.21 -0.1
1,903,789 + CCNA_01777 0.22 +0.1
1,903,811 + CCNA_01777 0.23 +0.7
1,903,819 + CCNA_01777 0.24 +0.0
1,903,933 + CCNA_01777 0.31 +0.0
1,903,938 + CCNA_01777 0.31 -0.1
1,903,953 - CCNA_01777 0.32 -0.7
1,904,032 + CCNA_01777 0.37 -2.0
1,904,059 - CCNA_01777 0.38 -1.0
1,904,114 + CCNA_01777 0.41 +0.6
1,904,122 - CCNA_01777 0.42 +0.7
1,904,137 + CCNA_01777 0.43 +0.0
1,904,165 - CCNA_01777 0.44 +0.1

Or see this region's nucleotide sequence