Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01763 and CCNA_01764 are separated by 120 nucleotides CCNA_01764 and CCNA_01765 overlap by 4 nucleotides CCNA_01765 and CCNA_01766 are separated by 42 nucleotides
CCNA_01763: CCNA_01763 - multifunctional aminopeptidase, at 1,891,999 to 1,893,480
_01763
CCNA_01764: CCNA_01764 - DNA polymerase III, chi subunit, at 1,893,601 to 1,894,062
_01764
CCNA_01765: CCNA_01765 - peptidase inhibitor, I78 family, at 1,894,059 to 1,894,400
_01765
CCNA_01766: CCNA_01766 - CsgG-related curli protein, at 1,894,443 to 1,895,228
_01766
Position (kb)
1894
1895 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1893.089 kb on - strand, within CCNA_01763 at 1893.292 kb on + strand, within CCNA_01763 at 1893.325 kb on + strand, within CCNA_01763 at 1893.426 kb on + strand at 1893.426 kb on + strand at 1893.426 kb on + strand at 1893.426 kb on + strand at 1893.426 kb on + strand at 1893.428 kb on + strand at 1893.438 kb on + strand at 1893.447 kb on - strand at 1893.461 kb on - strand at 1893.465 kb on + strand at 1893.479 kb on + strand at 1893.487 kb on - strand at 1893.502 kb on + strand at 1893.515 kb on - strand at 1893.515 kb on - strand at 1893.530 kb on - strand at 1893.530 kb on - strand at 1893.564 kb on - strand at 1893.612 kb on + strand at 1893.620 kb on - strand at 1893.620 kb on - strand at 1894.077 kb on - strand at 1894.085 kb on - strand at 1894.085 kb on - strand at 1894.085 kb on - strand at 1894.219 kb on + strand, within CCNA_01765 at 1894.258 kb on - strand, within CCNA_01765 at 1894.406 kb on + strand at 1894.422 kb on + strand at 1894.493 kb on + strand at 1894.523 kb on + strand, within CCNA_01766 at 1894.542 kb on + strand, within CCNA_01766 at 1894.542 kb on + strand, within CCNA_01766 at 1894.548 kb on - strand, within CCNA_01766 at 1894.550 kb on - strand, within CCNA_01766 at 1894.550 kb on - strand, within CCNA_01766 at 1894.573 kb on + strand, within CCNA_01766 at 1894.586 kb on + strand, within CCNA_01766 at 1894.743 kb on + strand, within CCNA_01766 at 1894.751 kb on - strand, within CCNA_01766 at 1894.751 kb on - strand, within CCNA_01766 at 1894.812 kb on + strand, within CCNA_01766 at 1894.820 kb on - strand, within CCNA_01766 at 1894.831 kb on - strand, within CCNA_01766 at 1894.872 kb on + strand, within CCNA_01766 at 1894.878 kb on - strand, within CCNA_01766 at 1894.929 kb on - strand, within CCNA_01766 at 1894.931 kb on - strand, within CCNA_01766 at 1894.950 kb on - strand, within CCNA_01766 at 1894.982 kb on + strand, within CCNA_01766 at 1894.982 kb on + strand, within CCNA_01766 at 1894.982 kb on - strand, within CCNA_01766 at 1895.021 kb on + strand, within CCNA_01766 at 1895.029 kb on - strand, within CCNA_01766 at 1895.029 kb on - strand, within CCNA_01766 at 1895.034 kb on - strand, within CCNA_01766 at 1895.058 kb on + strand, within CCNA_01766 at 1895.065 kb on + strand, within CCNA_01766 at 1895.067 kb on - strand, within CCNA_01766 at 1895.073 kb on - strand, within CCNA_01766 at 1895.174 kb on - strand at 1895.183 kb on + strand at 1895.191 kb on - strand at 1895.214 kb on + strand at 1895.235 kb on + strand at 1895.236 kb on + strand at 1895.243 kb on - strand at 1895.304 kb on + strand at 1895.341 kb on + strand at 1895.349 kb on - strand at 1895.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,893,089 - CCNA_01763 0.74 +2.1 1,893,292 + CCNA_01763 0.87 +0.4 1,893,325 + CCNA_01763 0.89 +1.2 1,893,426 + -0.1 1,893,426 + +1.9 1,893,426 + -1.0 1,893,426 + -0.0 1,893,426 + -1.0 1,893,428 + +0.6 1,893,438 + +0.4 1,893,447 - -0.3 1,893,461 - -0.8 1,893,465 + +0.6 1,893,479 + +0.5 1,893,487 - -0.2 1,893,502 + -0.2 1,893,515 - +0.5 1,893,515 - +0.0 1,893,530 - +0.4 1,893,530 - +0.5 1,893,564 - +0.9 1,893,612 + +0.5 1,893,620 - -2.3 1,893,620 - +0.2 1,894,077 - +0.6 1,894,085 - -0.6 1,894,085 - -1.6 1,894,085 - +0.8 1,894,219 + CCNA_01765 0.47 +0.7 1,894,258 - CCNA_01765 0.58 +1.0 1,894,406 + +0.6 1,894,422 + +0.7 1,894,493 + +0.3 1,894,523 + CCNA_01766 0.10 +0.4 1,894,542 + CCNA_01766 0.13 -0.5 1,894,542 + CCNA_01766 0.13 +0.2 1,894,548 - CCNA_01766 0.13 +0.7 1,894,550 - CCNA_01766 0.14 -0.2 1,894,550 - CCNA_01766 0.14 -0.7 1,894,573 + CCNA_01766 0.17 +0.9 1,894,586 + CCNA_01766 0.18 -1.4 1,894,743 + CCNA_01766 0.38 -1.3 1,894,751 - CCNA_01766 0.39 +0.6 1,894,751 - CCNA_01766 0.39 +0.6 1,894,812 + CCNA_01766 0.47 -0.3 1,894,820 - CCNA_01766 0.48 +0.3 1,894,831 - CCNA_01766 0.49 -1.6 1,894,872 + CCNA_01766 0.55 -1.1 1,894,878 - CCNA_01766 0.55 +0.3 1,894,929 - CCNA_01766 0.62 +1.0 1,894,931 - CCNA_01766 0.62 -0.4 1,894,950 - CCNA_01766 0.65 +0.5 1,894,982 + CCNA_01766 0.69 -0.9 1,894,982 + CCNA_01766 0.69 +0.3 1,894,982 - CCNA_01766 0.69 +1.0 1,895,021 + CCNA_01766 0.74 -1.1 1,895,029 - CCNA_01766 0.75 -0.7 1,895,029 - CCNA_01766 0.75 -0.5 1,895,034 - CCNA_01766 0.75 +0.7 1,895,058 + CCNA_01766 0.78 -0.3 1,895,065 + CCNA_01766 0.79 -0.8 1,895,067 - CCNA_01766 0.79 +0.5 1,895,073 - CCNA_01766 0.80 +0.1 1,895,174 - +1.0 1,895,183 + -0.8 1,895,191 - +1.6 1,895,214 + +0.2 1,895,235 + +1.6 1,895,236 + -1.5 1,895,243 - +0.6 1,895,304 + +1.1 1,895,341 + +2.8 1,895,349 - +2.3 1,895,365 + +0.5
Or see this region's nucleotide sequence