Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01754

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01752 and CCNA_01753 overlap by 8 nucleotidesCCNA_01753 and CCNA_01754 are separated by 38 nucleotidesCCNA_01754 and CCNA_01755 are separated by 112 nucleotides CCNA_01752: CCNA_01752 - YicC-family protein, at 1,879,813 to 1,880,694 _01752 CCNA_01753: CCNA_01753 - guanylate kinase, at 1,880,687 to 1,881,328 _01753 CCNA_01754: CCNA_01754 - transglycosylase associated protein, at 1,881,367 to 1,881,672 _01754 CCNA_01755: CCNA_01755 - two component sensor histidine kinase, at 1,881,785 to 1,883,437 _01755 Position (kb) 1881 1882Strain fitness (log2 ratio) -2 -1 0 1 2at 1880.401 kb on - strand, within CCNA_01752at 1880.479 kb on + strand, within CCNA_01752at 1880.498 kb on + strand, within CCNA_01752at 1880.506 kb on - strand, within CCNA_01752at 1880.531 kb on - strand, within CCNA_01752at 1880.635 kb on + strandat 1880.644 kb on - strandat 1881.322 kb on + strandat 1881.322 kb on + strandat 1881.322 kb on + strandat 1881.330 kb on - strandat 1881.330 kb on - strandat 1881.330 kb on - strandat 1881.392 kb on + strandat 1881.392 kb on + strandat 1881.633 kb on - strand, within CCNA_01754at 1881.652 kb on + strandat 1881.652 kb on + strandat 1881.660 kb on - strandat 1881.660 kb on - strandat 1881.704 kb on - strandat 1881.710 kb on + strandat 1881.712 kb on + strandat 1881.725 kb on - strandat 1881.835 kb on - strandat 1881.848 kb on + strandat 1881.883 kb on + strandat 1881.898 kb on + strandat 1881.912 kb on - strandat 1882.015 kb on + strand, within CCNA_01755at 1882.025 kb on - strand, within CCNA_01755at 1882.025 kb on - strand, within CCNA_01755at 1882.044 kb on - strand, within CCNA_01755at 1882.065 kb on - strand, within CCNA_01755at 1882.087 kb on - strand, within CCNA_01755at 1882.122 kb on + strand, within CCNA_01755at 1882.135 kb on - strand, within CCNA_01755at 1882.145 kb on - strand, within CCNA_01755at 1882.145 kb on - strand, within CCNA_01755at 1882.249 kb on + strand, within CCNA_01755at 1882.257 kb on - strand, within CCNA_01755at 1882.281 kb on - strand, within CCNA_01755at 1882.281 kb on - strand, within CCNA_01755at 1882.314 kb on - strand, within CCNA_01755at 1882.314 kb on - strand, within CCNA_01755at 1882.460 kb on - strand, within CCNA_01755at 1882.567 kb on + strand, within CCNA_01755at 1882.574 kb on + strand, within CCNA_01755at 1882.597 kb on - strand, within CCNA_01755at 1882.608 kb on + strand, within CCNA_01755at 1882.609 kb on + strand, within CCNA_01755at 1882.618 kb on - strand, within CCNA_01755

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,880,401 - CCNA_01752 0.67 -0.8
1,880,479 + CCNA_01752 0.76 +1.9
1,880,498 + CCNA_01752 0.78 +0.7
1,880,506 - CCNA_01752 0.79 -0.0
1,880,531 - CCNA_01752 0.81 -0.7
1,880,635 + +0.8
1,880,644 - -2.6
1,881,322 + +0.0
1,881,322 + -0.0
1,881,322 + +0.2
1,881,330 - +0.5
1,881,330 - -0.9
1,881,330 - -0.4
1,881,392 + +0.8
1,881,392 + +1.4
1,881,633 - CCNA_01754 0.87 +0.8
1,881,652 + +1.5
1,881,652 + +0.7
1,881,660 - +0.6
1,881,660 - -0.8
1,881,704 - +0.0
1,881,710 + -0.0
1,881,712 + -0.9
1,881,725 - +0.9
1,881,835 - +0.3
1,881,848 + -1.8
1,881,883 + +0.0
1,881,898 + +0.4
1,881,912 - -0.5
1,882,015 + CCNA_01755 0.14 -1.2
1,882,025 - CCNA_01755 0.15 +0.4
1,882,025 - CCNA_01755 0.15 +0.8
1,882,044 - CCNA_01755 0.16 +0.3
1,882,065 - CCNA_01755 0.17 +0.9
1,882,087 - CCNA_01755 0.18 -0.1
1,882,122 + CCNA_01755 0.20 +0.3
1,882,135 - CCNA_01755 0.21 -0.3
1,882,145 - CCNA_01755 0.22 -0.4
1,882,145 - CCNA_01755 0.22 -0.1
1,882,249 + CCNA_01755 0.28 -1.1
1,882,257 - CCNA_01755 0.29 +0.3
1,882,281 - CCNA_01755 0.30 +0.3
1,882,281 - CCNA_01755 0.30 +0.5
1,882,314 - CCNA_01755 0.32 +0.6
1,882,314 - CCNA_01755 0.32 -0.5
1,882,460 - CCNA_01755 0.41 +0.6
1,882,567 + CCNA_01755 0.47 -0.2
1,882,574 + CCNA_01755 0.48 +0.9
1,882,597 - CCNA_01755 0.49 +0.9
1,882,608 + CCNA_01755 0.50 +0.0
1,882,609 + CCNA_01755 0.50 -0.2
1,882,618 - CCNA_01755 0.50 +1.0

Or see this region's nucleotide sequence