Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01676

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01675 and CCNA_01676 are separated by 71 nucleotidesCCNA_01676 and CCNA_01677 are separated by 101 nucleotides CCNA_01675: CCNA_01675 - outer membrane protein, at 1,797,735 to 1,799,519 _01675 CCNA_01676: CCNA_01676 - hypothetical protein, at 1,799,591 to 1,803,712 _01676 CCNA_01677: CCNA_01677 - carboxypeptidase G2 precursor, at 1,803,814 to 1,805,058 _01677 Position (kb) 1799 1800 1801 1802 1803 1804Strain fitness (log2 ratio) -1 0 1 2at 1799.096 kb on + strand, within CCNA_01675at 1799.096 kb on + strand, within CCNA_01675at 1799.530 kb on + strandat 1799.535 kb on + strandat 1799.535 kb on + strandat 1799.535 kb on + strandat 1799.535 kb on + strandat 1799.535 kb on + strandat 1799.538 kb on - strandat 1799.538 kb on - strandat 1799.622 kb on + strandat 1799.632 kb on + strandat 1799.640 kb on - strandat 1799.985 kb on - strandat 1801.147 kb on + strand, within CCNA_01676at 1801.345 kb on + strand, within CCNA_01676at 1801.666 kb on + strand, within CCNA_01676at 1801.815 kb on + strand, within CCNA_01676at 1802.122 kb on + strand, within CCNA_01676at 1802.483 kb on + strand, within CCNA_01676at 1803.000 kb on + strand, within CCNA_01676at 1803.781 kb on + strandat 1803.824 kb on + strandat 1804.198 kb on - strand, within CCNA_01677at 1804.248 kb on + strand, within CCNA_01677at 1804.330 kb on + strand, within CCNA_01677at 1804.333 kb on - strand, within CCNA_01677at 1804.339 kb on - strand, within CCNA_01677at 1804.567 kb on - strand, within CCNA_01677at 1804.666 kb on + strand, within CCNA_01677at 1804.674 kb on - strand, within CCNA_01677

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,799,096 + CCNA_01675 0.76 -0.6
1,799,096 + CCNA_01675 0.76 +0.7
1,799,530 + +0.9
1,799,535 + +0.4
1,799,535 + -0.6
1,799,535 + +0.9
1,799,535 + -1.5
1,799,535 + +1.0
1,799,538 - +1.0
1,799,538 - +0.3
1,799,622 + +0.4
1,799,632 + +0.9
1,799,640 - -1.2
1,799,985 - +1.0
1,801,147 + CCNA_01676 0.38 +0.0
1,801,345 + CCNA_01676 0.43 +0.4
1,801,666 + CCNA_01676 0.50 +0.2
1,801,815 + CCNA_01676 0.54 +0.4
1,802,122 + CCNA_01676 0.61 -0.2
1,802,483 + CCNA_01676 0.70 +0.0
1,803,000 + CCNA_01676 0.83 +1.0
1,803,781 + +0.4
1,803,824 + +0.4
1,804,198 - CCNA_01677 0.31 +0.7
1,804,248 + CCNA_01677 0.35 +2.0
1,804,330 + CCNA_01677 0.41 +1.0
1,804,333 - CCNA_01677 0.42 -0.7
1,804,339 - CCNA_01677 0.42 +2.3
1,804,567 - CCNA_01677 0.60 +1.0
1,804,666 + CCNA_01677 0.68 +1.3
1,804,674 - CCNA_01677 0.69 +0.4

Or see this region's nucleotide sequence