Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01653

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01651 and CCNA_01652 are separated by 26 nucleotidesCCNA_01652 and CCNA_01653 are separated by 157 nucleotidesCCNA_01653 and CCNA_01654 overlap by 4 nucleotidesCCNA_01654 and CCNA_01655 are separated by 91 nucleotides CCNA_01651: CCNA_01651 - DNA gyrase subunit A, at 1,771,304 to 1,774,063 _01651 CCNA_01652: CCNA_01652 - phosphopantetheine adenylyltransferase, at 1,774,090 to 1,774,581 _01652 CCNA_01653: CCNA_01653 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,774,739 to 1,775,572 _01653 CCNA_01654: CCNA_01654 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,775,569 to 1,776,417 _01654 CCNA_01655: CCNA_01655 - cyclophilin-type peptidylprolyl cis-trans isomerase, at 1,776,509 to 1,776,976 _01655 Position (kb) 1774 1775 1776Strain fitness (log2 ratio) -2 -1 0 1at 1773.991 kb on + strandat 1774.083 kb on + strandat 1774.084 kb on - strandat 1774.575 kb on + strandat 1774.576 kb on + strandat 1774.576 kb on + strandat 1774.576 kb on + strandat 1774.604 kb on + strandat 1774.715 kb on + strandat 1774.728 kb on - strandat 1774.799 kb on - strandat 1774.803 kb on + strandat 1774.813 kb on + strandat 1774.828 kb on + strand, within CCNA_01653at 1774.840 kb on + strand, within CCNA_01653at 1774.841 kb on - strand, within CCNA_01653at 1774.891 kb on + strand, within CCNA_01653at 1774.920 kb on - strand, within CCNA_01653at 1775.027 kb on - strand, within CCNA_01653at 1775.027 kb on - strand, within CCNA_01653at 1775.051 kb on - strand, within CCNA_01653at 1775.134 kb on + strand, within CCNA_01653at 1775.163 kb on + strand, within CCNA_01653at 1775.163 kb on + strand, within CCNA_01653at 1775.234 kb on - strand, within CCNA_01653at 1775.275 kb on + strand, within CCNA_01653at 1775.275 kb on + strand, within CCNA_01653at 1775.308 kb on + strand, within CCNA_01653at 1775.322 kb on - strand, within CCNA_01653at 1775.332 kb on - strand, within CCNA_01653at 1775.339 kb on + strand, within CCNA_01653at 1775.356 kb on + strand, within CCNA_01653at 1775.356 kb on + strand, within CCNA_01653at 1775.356 kb on + strand, within CCNA_01653at 1775.364 kb on - strand, within CCNA_01653at 1775.364 kb on - strand, within CCNA_01653at 1775.364 kb on - strand, within CCNA_01653at 1775.398 kb on + strand, within CCNA_01653at 1775.406 kb on - strand, within CCNA_01653at 1775.461 kb on + strand, within CCNA_01653at 1775.493 kb on - strandat 1775.761 kb on - strand, within CCNA_01654at 1775.805 kb on - strand, within CCNA_01654at 1775.842 kb on + strand, within CCNA_01654at 1775.849 kb on + strand, within CCNA_01654at 1775.936 kb on + strand, within CCNA_01654at 1775.936 kb on + strand, within CCNA_01654at 1775.963 kb on + strand, within CCNA_01654at 1775.963 kb on + strand, within CCNA_01654at 1775.971 kb on - strand, within CCNA_01654at 1775.978 kb on + strand, within CCNA_01654at 1776.001 kb on + strand, within CCNA_01654at 1776.043 kb on + strand, within CCNA_01654at 1776.060 kb on + strand, within CCNA_01654at 1776.067 kb on - strand, within CCNA_01654at 1776.097 kb on + strand, within CCNA_01654at 1776.146 kb on - strand, within CCNA_01654at 1776.159 kb on + strand, within CCNA_01654at 1776.204 kb on - strand, within CCNA_01654at 1776.287 kb on - strand, within CCNA_01654at 1776.350 kb on - strandat 1776.454 kb on - strandat 1776.476 kb on - strandat 1776.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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1,773,991 + +0.6
1,774,083 + +1.6
1,774,084 - +0.0
1,774,575 + +0.2
1,774,576 + +0.1
1,774,576 + -1.1
1,774,576 + +0.9
1,774,604 + -0.8
1,774,715 + -0.1
1,774,728 - -1.1
1,774,799 - -0.4
1,774,803 + +0.0
1,774,813 + +0.9
1,774,828 + CCNA_01653 0.11 +0.3
1,774,840 + CCNA_01653 0.12 +0.6
1,774,841 - CCNA_01653 0.12 +0.3
1,774,891 + CCNA_01653 0.18 +0.3
1,774,920 - CCNA_01653 0.22 -1.9
1,775,027 - CCNA_01653 0.35 +1.1
1,775,027 - CCNA_01653 0.35 +1.0
1,775,051 - CCNA_01653 0.37 -0.4
1,775,134 + CCNA_01653 0.47 +0.1
1,775,163 + CCNA_01653 0.51 -0.1
1,775,163 + CCNA_01653 0.51 +1.1
1,775,234 - CCNA_01653 0.59 -0.9
1,775,275 + CCNA_01653 0.64 +0.3
1,775,275 + CCNA_01653 0.64 +1.2
1,775,308 + CCNA_01653 0.68 +0.4
1,775,322 - CCNA_01653 0.70 -0.2
1,775,332 - CCNA_01653 0.71 -0.9
1,775,339 + CCNA_01653 0.72 -0.4
1,775,356 + CCNA_01653 0.74 +0.8
1,775,356 + CCNA_01653 0.74 +1.1
1,775,356 + CCNA_01653 0.74 +0.5
1,775,364 - CCNA_01653 0.75 +0.7
1,775,364 - CCNA_01653 0.75 +0.6
1,775,364 - CCNA_01653 0.75 -1.3
1,775,398 + CCNA_01653 0.79 +0.3
1,775,406 - CCNA_01653 0.80 +0.7
1,775,461 + CCNA_01653 0.87 +0.6
1,775,493 - +1.5
1,775,761 - CCNA_01654 0.23 -1.5
1,775,805 - CCNA_01654 0.28 -0.2
1,775,842 + CCNA_01654 0.32 +0.4
1,775,849 + CCNA_01654 0.33 +0.9
1,775,936 + CCNA_01654 0.43 +1.0
1,775,936 + CCNA_01654 0.43 +0.6
1,775,963 + CCNA_01654 0.46 +0.4
1,775,963 + CCNA_01654 0.46 -0.5
1,775,971 - CCNA_01654 0.47 +0.9
1,775,978 + CCNA_01654 0.48 -0.1
1,776,001 + CCNA_01654 0.51 +0.2
1,776,043 + CCNA_01654 0.56 +0.2
1,776,060 + CCNA_01654 0.58 +0.3
1,776,067 - CCNA_01654 0.59 -0.4
1,776,097 + CCNA_01654 0.62 +0.6
1,776,146 - CCNA_01654 0.68 +0.7
1,776,159 + CCNA_01654 0.69 +0.2
1,776,204 - CCNA_01654 0.75 +0.6
1,776,287 - CCNA_01654 0.85 -0.2
1,776,350 - -2.3
1,776,454 - +0.8
1,776,476 - -0.6
1,776,555 + -0.1

Or see this region's nucleotide sequence