Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01629

Experiment: PYE with CHIR-090 10 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01626 and CCNA_01627 overlap by 4 nucleotidesCCNA_01627 and CCNA_01628 are separated by 11 nucleotidesCCNA_01628 and CCNA_01629 are separated by 123 nucleotidesCCNA_01629 and CCNA_01630 are separated by 21 nucleotides CCNA_01626: CCNA_01626 - pyridoxal phosphate biosynthetic protein pdxJ, at 1,747,568 to 1,748,332 _01626 CCNA_01627: CCNA_01627 - Holo-(acyl-carrier protein) synthase, at 1,748,329 to 1,748,730 _01627 CCNA_01628: CCNA_01628 - hypothetical protein, at 1,748,742 to 1,749,035 _01628 CCNA_01629: CCNA_01629 - signal peptidase I, at 1,749,159 to 1,750,004 _01629 CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721 _01630 Position (kb) 1749 1750 1751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1748.289 kb on + strandat 1748.321 kb on - strandat 1748.753 kb on - strandat 1748.890 kb on + strand, within CCNA_01628at 1748.901 kb on + strand, within CCNA_01628at 1749.028 kb on - strandat 1749.042 kb on + strandat 1749.042 kb on + strandat 1749.043 kb on + strandat 1749.050 kb on - strandat 1749.050 kb on - strandat 1749.077 kb on + strandat 1749.077 kb on + strandat 1749.077 kb on + strandat 1749.085 kb on - strandat 1749.085 kb on - strandat 1749.091 kb on + strandat 1749.156 kb on + strandat 1749.156 kb on + strandat 1749.249 kb on - strand, within CCNA_01629at 1749.251 kb on + strand, within CCNA_01629at 1749.251 kb on + strand, within CCNA_01629at 1749.253 kb on + strand, within CCNA_01629at 1749.259 kb on + strand, within CCNA_01629at 1749.267 kb on - strand, within CCNA_01629at 1749.323 kb on + strand, within CCNA_01629at 1749.366 kb on + strand, within CCNA_01629at 1749.366 kb on + strand, within CCNA_01629at 1749.530 kb on - strand, within CCNA_01629at 1749.530 kb on - strand, within CCNA_01629at 1749.530 kb on - strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.543 kb on + strand, within CCNA_01629at 1749.548 kb on + strand, within CCNA_01629at 1749.550 kb on - strand, within CCNA_01629at 1749.551 kb on - strand, within CCNA_01629at 1749.561 kb on + strand, within CCNA_01629at 1749.566 kb on + strand, within CCNA_01629at 1749.568 kb on - strand, within CCNA_01629at 1749.569 kb on - strand, within CCNA_01629at 1749.574 kb on - strand, within CCNA_01629at 1749.576 kb on + strand, within CCNA_01629at 1749.581 kb on + strand, within CCNA_01629at 1749.584 kb on - strand, within CCNA_01629at 1749.589 kb on - strand, within CCNA_01629at 1749.603 kb on + strand, within CCNA_01629at 1749.612 kb on - strand, within CCNA_01629at 1749.624 kb on + strand, within CCNA_01629at 1749.685 kb on - strand, within CCNA_01629at 1749.778 kb on + strand, within CCNA_01629at 1749.905 kb on + strand, within CCNA_01629at 1750.697 kb on + strandat 1750.716 kb on + strandat 1750.724 kb on - strandat 1750.724 kb on - strandat 1750.724 kb on - strandat 1750.746 kb on - strandat 1750.785 kb on - strandat 1750.793 kb on - strandat 1750.818 kb on - strandat 1750.825 kb on + strandat 1750.828 kb on - strandat 1750.892 kb on + strandat 1750.902 kb on + strandat 1750.902 kb on + strandat 1750.908 kb on - strandat 1750.908 kb on - strandat 1750.913 kb on + strandat 1750.930 kb on - strandat 1750.971 kb on + strandat 1750.973 kb on + strandat 1750.973 kb on + strandat 1750.973 kb on + strandat 1750.981 kb on - strandat 1750.981 kb on - strandat 1750.981 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
remove
1,748,289 + -0.1
1,748,321 - -0.4
1,748,753 - +0.2
1,748,890 + CCNA_01628 0.50 -0.4
1,748,901 + CCNA_01628 0.54 +0.8
1,749,028 - +0.3
1,749,042 + +0.6
1,749,042 + -0.3
1,749,043 + -0.4
1,749,050 - +2.1
1,749,050 - -0.3
1,749,077 + -1.3
1,749,077 + +0.9
1,749,077 + +2.0
1,749,085 - -1.4
1,749,085 - -1.1
1,749,091 + +0.2
1,749,156 + +0.4
1,749,156 + -0.2
1,749,249 - CCNA_01629 0.11 +0.7
1,749,251 + CCNA_01629 0.11 +2.0
1,749,251 + CCNA_01629 0.11 +0.6
1,749,253 + CCNA_01629 0.11 -0.8
1,749,259 + CCNA_01629 0.12 +0.9
1,749,267 - CCNA_01629 0.13 -1.6
1,749,323 + CCNA_01629 0.19 +0.6
1,749,366 + CCNA_01629 0.24 +0.4
1,749,366 + CCNA_01629 0.24 +0.2
1,749,530 - CCNA_01629 0.44 -0.3
1,749,530 - CCNA_01629 0.44 +1.4
1,749,530 - CCNA_01629 0.44 +0.4
1,749,543 + CCNA_01629 0.45 -0.4
1,749,543 + CCNA_01629 0.45 +0.4
1,749,543 + CCNA_01629 0.45 +0.8
1,749,548 + CCNA_01629 0.46 +0.0
1,749,550 - CCNA_01629 0.46 -3.1
1,749,551 - CCNA_01629 0.46 +1.2
1,749,561 + CCNA_01629 0.48 +0.6
1,749,566 + CCNA_01629 0.48 +0.2
1,749,568 - CCNA_01629 0.48 +1.5
1,749,569 - CCNA_01629 0.48 -0.7
1,749,574 - CCNA_01629 0.49 +0.4
1,749,576 + CCNA_01629 0.49 -0.6
1,749,581 + CCNA_01629 0.50 +1.1
1,749,584 - CCNA_01629 0.50 +0.0
1,749,589 - CCNA_01629 0.51 +1.7
1,749,603 + CCNA_01629 0.52 +0.4
1,749,612 - CCNA_01629 0.54 -0.3
1,749,624 + CCNA_01629 0.55 +2.4
1,749,685 - CCNA_01629 0.62 +0.0
1,749,778 + CCNA_01629 0.73 +0.5
1,749,905 + CCNA_01629 0.88 +0.4
1,750,697 + +0.0
1,750,716 + +0.8
1,750,724 - -0.4
1,750,724 - -1.1
1,750,724 - -1.1
1,750,746 - -0.5
1,750,785 - +0.2
1,750,793 - +0.3
1,750,818 - +0.6
1,750,825 + +0.1
1,750,828 - +0.6
1,750,892 + -0.0
1,750,902 + -1.0
1,750,902 + -2.0
1,750,908 - +0.0
1,750,908 - -0.2
1,750,913 + +2.1
1,750,930 - -1.4
1,750,971 + -1.4
1,750,973 + +0.2
1,750,973 + -0.9
1,750,973 + +0.3
1,750,981 - -1.1
1,750,981 - -0.6
1,750,981 - +1.0

Or see this region's nucleotide sequence