Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01502

Experiment: PYE with CHIR-090 10 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 10 ug/mL
1,612,389	+		CCNA_01503	0.12	-0.8
1,612,435	+		CCNA_01503	0.16	+0.6
1,612,435	+		CCNA_01503	0.16	+0.2
1,612,443	-		CCNA_01503	0.17	+0.6
1,612,465	-		CCNA_01503	0.19	+1.1
1,612,470	+		CCNA_01503	0.19	-2.1
1,612,507	-		CCNA_01503	0.22	-0.1
1,612,507	-		CCNA_01503	0.22	-1.0
1,612,585	+		CCNA_01503	0.30	+0.5
1,612,585	+		CCNA_01503	0.30	+0.2
1,612,593	-		CCNA_01503	0.30	-0.4
1,612,593	-		CCNA_01503	0.30	-1.4
1,612,659	-		CCNA_01503	0.36	-2.5
1,612,659	-		CCNA_01503	0.36	-0.3
1,612,689	+		CCNA_01503	0.39	+0.1
1,612,711	+		CCNA_01503	0.41	-0.2
1,612,716	+		CCNA_01503	0.42	+0.0
1,612,787	-		CCNA_01503	0.48	-1.9
1,612,787	-		CCNA_01503	0.48	+0.4
1,612,820	+		CCNA_01503	0.51	-0.8
1,612,820	+		CCNA_01503	0.51	-1.6
1,612,825	+		CCNA_01503	0.52	-0.3
1,612,828	-		CCNA_01503	0.52	-1.0
1,612,859	+		CCNA_01503	0.55	-2.0
1,612,865	+		CCNA_01503	0.55	-0.6
1,612,874	-		CCNA_01503	0.56	+2.3
1,612,906	+		CCNA_01503	0.59	+0.2
1,612,906	+		CCNA_01503	0.59	+0.1
1,612,925	+		CCNA_01503	0.61	-0.4
1,613,023	-		CCNA_01503	0.70	-0.2
1,613,023	-		CCNA_01503	0.70	-0.0
1,613,028	-		CCNA_01503	0.71	-0.8
1,613,043	+		CCNA_01503	0.72	+0.1
1,613,065	-		CCNA_01503	0.74	-0.3
1,613,092	+		CCNA_01503	0.76	-0.5
1,613,100	-		CCNA_01503	0.77	+0.6
1,613,110	+		CCNA_01503	0.78	+0.2
1,613,115	+		CCNA_01503	0.79	+0.0
1,613,208	+		CCNA_01503	0.87	+0.5
1,613,216	-		CCNA_01503	0.88	-0.7
1,613,216	-		CCNA_01503	0.88	+0.7
1,613,216	-		CCNA_01503	0.88	+0.9
1,613,216	-		CCNA_01503	0.88	-0.1
1,613,257	-				-0.2
1,613,273	+				+0.8
1,613,302	+				+0.2
1,613,302	+				+1.4
1,613,310	-				-0.2
1,613,315	-				+0.6
1,613,323	-				+0.2
1,613,326	+				+0.6
1,613,366	-				+0.5
1,613,373	+				-0.8
1,613,408	+				+0.9
1,613,416	-				+0.6
1,613,417	-				-0.3
1,613,440	+		CCNA_01502	0.10	+0.4
1,613,465	+		CCNA_01502	0.13	+1.1
1,613,468	-		CCNA_01502	0.13	-0.8
1,613,480	+		CCNA_01502	0.14	-0.6
1,613,505	+		CCNA_01502	0.17	+0.1
1,613,511	-		CCNA_01502	0.18	-0.5
1,613,513	-		CCNA_01502	0.18	+0.3
1,613,528	-		CCNA_01502	0.19	+0.9
1,613,534	+		CCNA_01502	0.20	+0.8
1,613,542	-		CCNA_01502	0.21	+0.5
1,613,614	+		CCNA_01502	0.28	+0.5
1,613,628	+		CCNA_01502	0.30	+1.2
1,613,636	-		CCNA_01502	0.31	-0.4
1,613,661	+		CCNA_01502	0.33	+0.9
1,613,689	-		CCNA_01502	0.36	-1.8
1,613,713	-		CCNA_01502	0.39	+0.3
1,613,750	-		CCNA_01502	0.43	+0.1
1,613,787	+		CCNA_01502	0.47	-0.7
1,613,795	-		CCNA_01502	0.48	-0.2
1,613,809	-		CCNA_01502	0.49	-2.8
1,613,824	+		CCNA_01502	0.51	-0.0
1,613,837	+		CCNA_01502	0.52	+0.4
1,613,837	+		CCNA_01502	0.52	+0.9
1,613,845	-		CCNA_01502	0.53	-1.3
1,613,845	-		CCNA_01502	0.53	-0.5
1,613,855	-		CCNA_01502	0.54	-0.4
1,613,865	+		CCNA_01502	0.55	+0.3
1,613,875	+		CCNA_01502	0.56	+0.2
1,613,892	-		CCNA_01502	0.58	+0.8
1,613,965	+		CCNA_01502	0.66	+0.3
1,613,996	-		CCNA_01502	0.69	+0.6
1,613,998	+		CCNA_01502	0.69	+0.4
1,613,998	+		CCNA_01502	0.69	+0.6
1,613,998	+		CCNA_01502	0.69	+0.5
1,613,998	+		CCNA_01502	0.69	+0.4
1,613,998	+		CCNA_01502	0.69	+0.7
1,613,998	+		CCNA_01502	0.69	+0.8
1,613,998	+		CCNA_01502	0.69	-0.9
1,613,998	+		CCNA_01502	0.69	-1.1
1,613,998	+		CCNA_01502	0.69	-0.4
1,613,998	+		CCNA_01502	0.69	+0.4
1,613,998	+		CCNA_01502	0.69	+0.7
1,613,998	+		CCNA_01502	0.69	+0.2
1,613,998	+		CCNA_01502	0.69	-0.5
1,613,998	+		CCNA_01502	0.69	+0.4
1,613,998	+		CCNA_01502	0.69	+0.3
1,613,998	+		CCNA_01502	0.69	+0.3
1,614,006	-		CCNA_01502	0.70	-0.6
1,614,006	-		CCNA_01502	0.70	+1.1
1,614,018	+		CCNA_01502	0.71	+1.0
1,614,026	-		CCNA_01502	0.72	+1.6
1,614,037	+		CCNA_01502	0.73	-2.0
1,614,095	-		CCNA_01502	0.79	+0.4
1,614,095	-		CCNA_01502	0.79	-0.3
1,614,095	-		CCNA_01502	0.79	-0.9
1,614,095	-		CCNA_01502	0.79	-0.8
1,614,097	-		CCNA_01502	0.80	+2.4
1,614,123	+		CCNA_01502	0.82	+0.7
1,614,133	-		CCNA_01502	0.83	+0.9
1,614,209	-				-1.3
1,614,233	+				+2.1
1,614,241	-				-0.3
1,614,241	-				+0.8
1,614,241	-				-1.3
1,614,265	+				-1.2
1,614,265	+				+0.3
1,614,273	-				-0.5
1,614,340	-				+0.1
1,614,342	-				+1.1
1,614,379	+				+0.4
1,614,392	-				-0.3
1,614,450	+				+1.1
1,614,522	+		CCNA_01504	0.11	+1.1
1,614,522	+		CCNA_01504	0.11	-1.0
1,614,523	+		CCNA_01504	0.11	-0.3
1,614,591	-		CCNA_01504	0.14	+0.3
1,614,603	+		CCNA_01504	0.15	-0.3
1,614,611	+		CCNA_01504	0.15	+1.2
1,614,611	-		CCNA_01504	0.15	+1.3
1,614,614	-		CCNA_01504	0.15	-0.2
1,614,616	+		CCNA_01504	0.15	-0.8
1,614,644	+		CCNA_01504	0.16	-1.7
1,614,684	+		CCNA_01504	0.18	-0.0
1,614,732	+		CCNA_01504	0.21	-0.8
1,614,753	+		CCNA_01504	0.22	-2.2
1,614,763	-		CCNA_01504	0.22	+1.2
1,614,865	+		CCNA_01504	0.27	+2.0
1,614,870	+		CCNA_01504	0.27	-0.9
1,614,873	-		CCNA_01504	0.27	-0.4
1,614,886	-		CCNA_01504	0.28	-0.9
1,614,906	-		CCNA_01504	0.29	+1.0
1,615,097	-		CCNA_01504	0.38	+0.1
1,615,132	-		CCNA_01504	0.40	+0.7
1,615,132	-		CCNA_01504	0.40	+1.2
1,615,132	-		CCNA_01504	0.40	+0.2
1,615,219	+		CCNA_01504	0.44	-2.1
1,615,224	+		CCNA_01504	0.44	+1.2
1,615,258	-		CCNA_01504	0.46	+0.5
1,615,258	-		CCNA_01504	0.46	+0.3
1,615,268	-		CCNA_01504	0.46	-0.2
1,615,285	-		CCNA_01504	0.47	-1.2