Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01292 and CCNA_01293 are separated by 60 nucleotides CCNA_01293 and CCNA_01294 overlap by 43 nucleotides CCNA_01294 and CCNA_01295 are separated by 29 nucleotides CCNA_01295 and CCNA_01296 are separated by 123 nucleotides
CCNA_01292: CCNA_01292 - hypothetical protein, at 1,417,855 to 1,418,280
_01292
CCNA_01293: CCNA_01293 - hypothetical protein, at 1,418,341 to 1,418,772
_01293
CCNA_01294: CCNA_01294 - transposase, at 1,418,730 to 1,419,224
_01294
CCNA_01295: CCNA_01295 - integral membrane protein, at 1,419,254 to 1,419,994
_01295
CCNA_01296: CCNA_01296 - stalk-specific protein X, at 1,420,118 to 1,422,046
_01296
Position (kb)
1419
1420 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1418.298 kb on - strand at 1418.298 kb on - strand at 1418.313 kb on - strand at 1419.264 kb on + strand at 1419.272 kb on - strand at 1419.327 kb on - strand at 1419.338 kb on + strand, within CCNA_01295 at 1419.338 kb on + strand, within CCNA_01295 at 1419.338 kb on + strand, within CCNA_01295 at 1419.359 kb on + strand, within CCNA_01295 at 1419.367 kb on - strand, within CCNA_01295 at 1419.377 kb on - strand, within CCNA_01295 at 1419.377 kb on - strand, within CCNA_01295 at 1419.387 kb on + strand, within CCNA_01295 at 1419.387 kb on + strand, within CCNA_01295 at 1419.395 kb on - strand, within CCNA_01295 at 1419.453 kb on - strand, within CCNA_01295 at 1419.473 kb on + strand, within CCNA_01295 at 1419.542 kb on + strand, within CCNA_01295 at 1419.550 kb on - strand, within CCNA_01295 at 1419.602 kb on + strand, within CCNA_01295 at 1419.610 kb on - strand, within CCNA_01295 at 1419.639 kb on - strand, within CCNA_01295 at 1419.677 kb on + strand, within CCNA_01295 at 1419.680 kb on - strand, within CCNA_01295 at 1419.680 kb on - strand, within CCNA_01295 at 1419.720 kb on - strand, within CCNA_01295 at 1419.720 kb on - strand, within CCNA_01295 at 1419.733 kb on + strand, within CCNA_01295 at 1419.798 kb on - strand, within CCNA_01295 at 1419.798 kb on - strand, within CCNA_01295 at 1419.848 kb on - strand, within CCNA_01295 at 1419.861 kb on - strand, within CCNA_01295 at 1419.913 kb on - strand, within CCNA_01295 at 1419.961 kb on - strand at 1419.971 kb on - strand at 1419.977 kb on + strand at 1419.990 kb on + strand at 1419.999 kb on + strand at 1420.007 kb on - strand at 1420.014 kb on + strand at 1420.092 kb on - strand at 1420.109 kb on + strand at 1420.116 kb on + strand at 1420.118 kb on + strand at 1420.121 kb on + strand at 1420.122 kb on + strand at 1420.124 kb on - strand at 1420.124 kb on - strand at 1420.124 kb on - strand at 1420.124 kb on - strand at 1420.129 kb on - strand at 1420.187 kb on + strand at 1420.203 kb on - strand at 1420.306 kb on + strand at 1420.316 kb on + strand, within CCNA_01296 at 1420.328 kb on + strand, within CCNA_01296 at 1420.328 kb on + strand, within CCNA_01296 at 1420.328 kb on + strand, within CCNA_01296 at 1420.336 kb on - strand, within CCNA_01296 at 1420.360 kb on - strand, within CCNA_01296 at 1420.374 kb on - strand, within CCNA_01296 at 1420.387 kb on + strand, within CCNA_01296 at 1420.395 kb on - strand, within CCNA_01296 at 1420.450 kb on - strand, within CCNA_01296 at 1420.457 kb on + strand, within CCNA_01296 at 1420.470 kb on - strand, within CCNA_01296 at 1420.473 kb on + strand, within CCNA_01296 at 1420.535 kb on - strand, within CCNA_01296 at 1420.542 kb on + strand, within CCNA_01296 at 1420.560 kb on + strand, within CCNA_01296 at 1420.566 kb on + strand, within CCNA_01296 at 1420.574 kb on - strand, within CCNA_01296 at 1420.659 kb on - strand, within CCNA_01296 at 1420.698 kb on + strand, within CCNA_01296 at 1420.706 kb on - strand, within CCNA_01296 at 1420.706 kb on - strand, within CCNA_01296 at 1420.793 kb on + strand, within CCNA_01296 at 1420.858 kb on + strand, within CCNA_01296 at 1420.867 kb on - strand, within CCNA_01296 at 1420.882 kb on + strand, within CCNA_01296 at 1420.900 kb on - strand, within CCNA_01296 at 1420.936 kb on - strand, within CCNA_01296 at 1420.941 kb on - strand, within CCNA_01296 at 1420.950 kb on + strand, within CCNA_01296 at 1420.958 kb on - strand, within CCNA_01296 at 1420.958 kb on - strand, within CCNA_01296 at 1420.966 kb on + strand, within CCNA_01296 at 1420.966 kb on + strand, within CCNA_01296 at 1420.971 kb on + strand, within CCNA_01296 at 1420.974 kb on - strand, within CCNA_01296 at 1420.974 kb on - strand, within CCNA_01296 at 1420.974 kb on - strand, within CCNA_01296 at 1420.974 kb on - strand, within CCNA_01296 at 1420.974 kb on - strand, within CCNA_01296 at 1420.994 kb on + strand, within CCNA_01296
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 1,418,298 - -1.6 1,418,298 - +0.4 1,418,313 - +1.6 1,419,264 + +0.6 1,419,272 - +0.5 1,419,327 - +0.4 1,419,338 + CCNA_01295 0.11 -0.6 1,419,338 + CCNA_01295 0.11 -0.1 1,419,338 + CCNA_01295 0.11 +0.2 1,419,359 + CCNA_01295 0.14 +0.1 1,419,367 - CCNA_01295 0.15 +1.7 1,419,377 - CCNA_01295 0.17 +0.4 1,419,377 - CCNA_01295 0.17 -0.3 1,419,387 + CCNA_01295 0.18 -0.7 1,419,387 + CCNA_01295 0.18 +1.0 1,419,395 - CCNA_01295 0.19 +0.6 1,419,453 - CCNA_01295 0.27 +1.3 1,419,473 + CCNA_01295 0.30 -1.5 1,419,542 + CCNA_01295 0.39 +0.7 1,419,550 - CCNA_01295 0.40 +0.3 1,419,602 + CCNA_01295 0.47 +1.1 1,419,610 - CCNA_01295 0.48 +0.4 1,419,639 - CCNA_01295 0.52 +0.3 1,419,677 + CCNA_01295 0.57 +1.2 1,419,680 - CCNA_01295 0.57 -0.2 1,419,680 - CCNA_01295 0.57 +0.2 1,419,720 - CCNA_01295 0.63 -0.2 1,419,720 - CCNA_01295 0.63 +0.9 1,419,733 + CCNA_01295 0.65 -0.3 1,419,798 - CCNA_01295 0.73 +0.2 1,419,798 - CCNA_01295 0.73 +0.5 1,419,848 - CCNA_01295 0.80 +0.6 1,419,861 - CCNA_01295 0.82 -0.7 1,419,913 - CCNA_01295 0.89 +1.0 1,419,961 - +0.4 1,419,971 - +0.5 1,419,977 + +0.3 1,419,990 + +0.1 1,419,999 + +2.7 1,420,007 - +0.4 1,420,014 + +0.3 1,420,092 - +0.6 1,420,109 + -0.8 1,420,116 + -0.0 1,420,118 + +0.4 1,420,121 + -1.1 1,420,122 + -0.1 1,420,124 - +0.4 1,420,124 - -1.1 1,420,124 - +0.4 1,420,124 - +0.2 1,420,129 - +0.8 1,420,187 + -0.8 1,420,203 - +0.8 1,420,306 + +1.1 1,420,316 + CCNA_01296 0.10 -0.1 1,420,328 + CCNA_01296 0.11 -1.0 1,420,328 + CCNA_01296 0.11 +0.8 1,420,328 + CCNA_01296 0.11 +0.6 1,420,336 - CCNA_01296 0.11 +0.6 1,420,360 - CCNA_01296 0.13 +0.3 1,420,374 - CCNA_01296 0.13 -0.0 1,420,387 + CCNA_01296 0.14 +0.6 1,420,395 - CCNA_01296 0.14 +0.3 1,420,450 - CCNA_01296 0.17 +0.6 1,420,457 + CCNA_01296 0.18 -0.3 1,420,470 - CCNA_01296 0.18 -0.1 1,420,473 + CCNA_01296 0.18 -0.8 1,420,535 - CCNA_01296 0.22 +0.3 1,420,542 + CCNA_01296 0.22 +0.1 1,420,560 + CCNA_01296 0.23 +0.5 1,420,566 + CCNA_01296 0.23 -0.2 1,420,574 - CCNA_01296 0.24 -2.5 1,420,659 - CCNA_01296 0.28 +1.7 1,420,698 + CCNA_01296 0.30 -0.2 1,420,706 - CCNA_01296 0.30 -0.2 1,420,706 - CCNA_01296 0.30 +0.8 1,420,793 + CCNA_01296 0.35 +1.7 1,420,858 + CCNA_01296 0.38 -0.2 1,420,867 - CCNA_01296 0.39 -1.9 1,420,882 + CCNA_01296 0.40 -0.1 1,420,900 - CCNA_01296 0.41 +0.3 1,420,936 - CCNA_01296 0.42 +0.7 1,420,941 - CCNA_01296 0.43 +0.7 1,420,950 + CCNA_01296 0.43 +0.0 1,420,958 - CCNA_01296 0.44 +0.5 1,420,958 - CCNA_01296 0.44 -0.0 1,420,966 + CCNA_01296 0.44 -0.5 1,420,966 + CCNA_01296 0.44 -0.5 1,420,971 + CCNA_01296 0.44 -1.0 1,420,974 - CCNA_01296 0.44 +0.2 1,420,974 - CCNA_01296 0.44 +0.6 1,420,974 - CCNA_01296 0.44 -0.1 1,420,974 - CCNA_01296 0.44 +0.3 1,420,974 - CCNA_01296 0.44 -0.1 1,420,994 + CCNA_01296 0.45 +1.7
Or see this region's nucleotide sequence