Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01143

Experiment: PYE with CHIR-090 10 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01142 and CCNA_01143 are separated by 360 nucleotidesCCNA_01143 and CCNA_01144 are separated by 29 nucleotidesCCNA_01144 and CCNA_01145 are separated by 22 nucleotides CCNA_01142: CCNA_01142 - hypothetical protein, at 1,246,920 to 1,247,396 _01142 CCNA_01143: CCNA_01143 - endoribonuclease L-PSP, at 1,247,757 to 1,248,239 _01143 CCNA_01144: CCNA_01144 - cytochrome c oxidase polypeptide II, at 1,248,269 to 1,248,661 _01144 CCNA_01145: CCNA_01145 - monoamine oxidase, at 1,248,684 to 1,250,288 _01145 Position (kb) 1247 1248 1249Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1246.759 kb on - strandat 1246.835 kb on - strandat 1246.842 kb on + strandat 1246.852 kb on - strandat 1246.909 kb on - strandat 1246.911 kb on + strandat 1246.940 kb on + strandat 1246.948 kb on - strandat 1246.971 kb on + strand, within CCNA_01142at 1246.971 kb on + strand, within CCNA_01142at 1246.979 kb on - strand, within CCNA_01142at 1246.987 kb on - strand, within CCNA_01142at 1247.039 kb on + strand, within CCNA_01142at 1247.150 kb on + strand, within CCNA_01142at 1247.150 kb on + strand, within CCNA_01142at 1247.158 kb on - strand, within CCNA_01142at 1247.216 kb on + strand, within CCNA_01142at 1247.266 kb on + strand, within CCNA_01142at 1247.288 kb on + strand, within CCNA_01142at 1247.296 kb on - strand, within CCNA_01142at 1247.304 kb on - strand, within CCNA_01142at 1247.385 kb on - strandat 1247.391 kb on + strandat 1247.399 kb on - strandat 1247.410 kb on + strandat 1247.411 kb on + strandat 1247.411 kb on + strandat 1247.411 kb on + strandat 1247.416 kb on + strandat 1247.455 kb on - strandat 1247.631 kb on + strandat 1247.675 kb on - strandat 1247.757 kb on - strandat 1247.780 kb on + strandat 1247.785 kb on + strandat 1247.788 kb on - strandat 1247.863 kb on + strand, within CCNA_01143at 1247.917 kb on + strand, within CCNA_01143at 1247.993 kb on - strand, within CCNA_01143at 1248.003 kb on - strand, within CCNA_01143at 1248.021 kb on + strand, within CCNA_01143at 1248.022 kb on + strand, within CCNA_01143at 1248.022 kb on + strand, within CCNA_01143at 1248.029 kb on - strand, within CCNA_01143at 1248.087 kb on - strand, within CCNA_01143at 1248.096 kb on + strand, within CCNA_01143at 1248.115 kb on - strand, within CCNA_01143at 1248.190 kb on + strand, within CCNA_01143at 1248.190 kb on + strand, within CCNA_01143at 1248.265 kb on - strandat 1248.267 kb on + strandat 1248.292 kb on + strandat 1248.292 kb on + strandat 1248.339 kb on + strand, within CCNA_01144at 1248.383 kb on + strand, within CCNA_01144at 1248.383 kb on + strand, within CCNA_01144at 1248.391 kb on - strand, within CCNA_01144at 1248.420 kb on + strand, within CCNA_01144at 1248.462 kb on - strand, within CCNA_01144at 1248.464 kb on + strand, within CCNA_01144at 1248.464 kb on + strand, within CCNA_01144at 1248.472 kb on - strand, within CCNA_01144at 1248.472 kb on - strand, within CCNA_01144at 1248.483 kb on + strand, within CCNA_01144at 1248.488 kb on + strand, within CCNA_01144at 1248.488 kb on + strand, within CCNA_01144at 1248.488 kb on + strand, within CCNA_01144at 1248.491 kb on - strand, within CCNA_01144at 1248.532 kb on - strand, within CCNA_01144at 1248.575 kb on - strand, within CCNA_01144at 1248.587 kb on - strand, within CCNA_01144at 1248.602 kb on + strand, within CCNA_01144at 1248.619 kb on - strand, within CCNA_01144at 1248.689 kb on + strandat 1248.702 kb on + strandat 1248.764 kb on + strandat 1248.774 kb on - strandat 1248.787 kb on + strandat 1248.787 kb on + strandat 1248.805 kb on + strandat 1248.805 kb on + strandat 1248.815 kb on + strandat 1248.815 kb on + strandat 1248.823 kb on - strandat 1248.828 kb on - strandat 1248.828 kb on - strandat 1248.881 kb on - strand, within CCNA_01145at 1248.923 kb on - strand, within CCNA_01145at 1248.954 kb on - strand, within CCNA_01145at 1248.988 kb on + strand, within CCNA_01145at 1248.996 kb on - strand, within CCNA_01145at 1249.041 kb on + strand, within CCNA_01145at 1249.041 kb on + strand, within CCNA_01145at 1249.041 kb on + strand, within CCNA_01145at 1249.041 kb on + strand, within CCNA_01145at 1249.049 kb on - strand, within CCNA_01145at 1249.049 kb on - strand, within CCNA_01145at 1249.049 kb on - strand, within CCNA_01145at 1249.057 kb on + strand, within CCNA_01145at 1249.079 kb on + strand, within CCNA_01145at 1249.079 kb on + strand, within CCNA_01145at 1249.081 kb on - strand, within CCNA_01145at 1249.082 kb on - strand, within CCNA_01145at 1249.087 kb on - strand, within CCNA_01145at 1249.099 kb on + strand, within CCNA_01145at 1249.099 kb on + strand, within CCNA_01145at 1249.104 kb on + strand, within CCNA_01145at 1249.107 kb on - strand, within CCNA_01145at 1249.107 kb on - strand, within CCNA_01145at 1249.114 kb on + strand, within CCNA_01145at 1249.114 kb on + strand, within CCNA_01145at 1249.114 kb on + strand, within CCNA_01145at 1249.119 kb on + strand, within CCNA_01145at 1249.122 kb on - strand, within CCNA_01145at 1249.122 kb on - strand, within CCNA_01145at 1249.179 kb on + strand, within CCNA_01145at 1249.193 kb on - strand, within CCNA_01145at 1249.200 kb on - strand, within CCNA_01145at 1249.204 kb on + strand, within CCNA_01145at 1249.204 kb on + strand, within CCNA_01145at 1249.214 kb on + strand, within CCNA_01145at 1249.222 kb on - strand, within CCNA_01145at 1249.222 kb on - strand, within CCNA_01145at 1249.224 kb on + strand, within CCNA_01145at 1249.229 kb on + strand, within CCNA_01145at 1249.232 kb on - strand, within CCNA_01145

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
remove
1,246,759 - -0.5
1,246,835 - +0.2
1,246,842 + -0.9
1,246,852 - +0.2
1,246,909 - -1.4
1,246,911 + -0.4
1,246,940 + +0.7
1,246,948 - -1.1
1,246,971 + CCNA_01142 0.11 +1.1
1,246,971 + CCNA_01142 0.11 -0.6
1,246,979 - CCNA_01142 0.12 -2.8
1,246,987 - CCNA_01142 0.14 -0.4
1,247,039 + CCNA_01142 0.25 +0.4
1,247,150 + CCNA_01142 0.48 +1.3
1,247,150 + CCNA_01142 0.48 -0.7
1,247,158 - CCNA_01142 0.50 -0.4
1,247,216 + CCNA_01142 0.62 +0.9
1,247,266 + CCNA_01142 0.73 +0.5
1,247,288 + CCNA_01142 0.77 +0.5
1,247,296 - CCNA_01142 0.79 +0.2
1,247,304 - CCNA_01142 0.81 +0.6
1,247,385 - -1.6
1,247,391 + -0.3
1,247,399 - -2.0
1,247,410 + -0.1
1,247,411 + +0.9
1,247,411 + -0.4
1,247,411 + +1.2
1,247,416 + -0.2
1,247,455 - -0.7
1,247,631 + +0.6
1,247,675 - -0.2
1,247,757 - +1.0
1,247,780 + +1.0
1,247,785 + -0.3
1,247,788 - +0.6
1,247,863 + CCNA_01143 0.22 +0.5
1,247,917 + CCNA_01143 0.33 +1.3
1,247,993 - CCNA_01143 0.49 +0.1
1,248,003 - CCNA_01143 0.51 +0.2
1,248,021 + CCNA_01143 0.55 -0.5
1,248,022 + CCNA_01143 0.55 +0.4
1,248,022 + CCNA_01143 0.55 +0.9
1,248,029 - CCNA_01143 0.56 +0.6
1,248,087 - CCNA_01143 0.68 +0.6
1,248,096 + CCNA_01143 0.70 +0.4
1,248,115 - CCNA_01143 0.74 +0.7
1,248,190 + CCNA_01143 0.90 -0.2
1,248,190 + CCNA_01143 0.90 +0.3
1,248,265 - +0.6
1,248,267 + -1.0
1,248,292 + +1.6
1,248,292 + +1.4
1,248,339 + CCNA_01144 0.18 +0.8
1,248,383 + CCNA_01144 0.29 -0.4
1,248,383 + CCNA_01144 0.29 +0.1
1,248,391 - CCNA_01144 0.31 -0.0
1,248,420 + CCNA_01144 0.38 -0.4
1,248,462 - CCNA_01144 0.49 -0.1
1,248,464 + CCNA_01144 0.50 +0.2
1,248,464 + CCNA_01144 0.50 -0.3
1,248,472 - CCNA_01144 0.52 +0.6
1,248,472 - CCNA_01144 0.52 +0.3
1,248,483 + CCNA_01144 0.54 -0.4
1,248,488 + CCNA_01144 0.56 +0.6
1,248,488 + CCNA_01144 0.56 +0.8
1,248,488 + CCNA_01144 0.56 +1.6
1,248,491 - CCNA_01144 0.56 +0.0
1,248,532 - CCNA_01144 0.67 -0.4
1,248,575 - CCNA_01144 0.78 +0.2
1,248,587 - CCNA_01144 0.81 -1.6
1,248,602 + CCNA_01144 0.85 +0.0
1,248,619 - CCNA_01144 0.89 +0.9
1,248,689 + -0.9
1,248,702 + +0.6
1,248,764 + -1.0
1,248,774 - -1.1
1,248,787 + -0.1
1,248,787 + +1.5
1,248,805 + +0.3
1,248,805 + -1.0
1,248,815 + +0.1
1,248,815 + -0.0
1,248,823 - -0.0
1,248,828 - -1.1
1,248,828 - -0.4
1,248,881 - CCNA_01145 0.12 -1.1
1,248,923 - CCNA_01145 0.15 -0.0
1,248,954 - CCNA_01145 0.17 +0.8
1,248,988 + CCNA_01145 0.19 +0.9
1,248,996 - CCNA_01145 0.19 +0.3
1,249,041 + CCNA_01145 0.22 -0.2
1,249,041 + CCNA_01145 0.22 +0.8
1,249,041 + CCNA_01145 0.22 +0.4
1,249,041 + CCNA_01145 0.22 -0.6
1,249,049 - CCNA_01145 0.23 +0.9
1,249,049 - CCNA_01145 0.23 -0.1
1,249,049 - CCNA_01145 0.23 -0.8
1,249,057 + CCNA_01145 0.23 -0.1
1,249,079 + CCNA_01145 0.25 -1.9
1,249,079 + CCNA_01145 0.25 -1.0
1,249,081 - CCNA_01145 0.25 -1.0
1,249,082 - CCNA_01145 0.25 -0.7
1,249,087 - CCNA_01145 0.25 +0.3
1,249,099 + CCNA_01145 0.26 -1.4
1,249,099 + CCNA_01145 0.26 -1.9
1,249,104 + CCNA_01145 0.26 -0.5
1,249,107 - CCNA_01145 0.26 -0.1
1,249,107 - CCNA_01145 0.26 -0.1
1,249,114 + CCNA_01145 0.27 -0.4
1,249,114 + CCNA_01145 0.27 +0.6
1,249,114 + CCNA_01145 0.27 +1.0
1,249,119 + CCNA_01145 0.27 -0.3
1,249,122 - CCNA_01145 0.27 -0.5
1,249,122 - CCNA_01145 0.27 -0.4
1,249,179 + CCNA_01145 0.31 -0.4
1,249,193 - CCNA_01145 0.32 -1.3
1,249,200 - CCNA_01145 0.32 -0.5
1,249,204 + CCNA_01145 0.32 -0.9
1,249,204 + CCNA_01145 0.32 -0.5
1,249,214 + CCNA_01145 0.33 -0.5
1,249,222 - CCNA_01145 0.34 +0.6
1,249,222 - CCNA_01145 0.34 -0.2
1,249,224 + CCNA_01145 0.34 +2.6
1,249,229 + CCNA_01145 0.34 -0.6
1,249,232 - CCNA_01145 0.34 -0.8

Or see this region's nucleotide sequence