Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00891 and CCNA_00892 are separated by 486 nucleotides CCNA_00892 and CCNA_00893 are separated by 159 nucleotides
CCNA_00891: CCNA_00891 - transporter, drug/metabolite exporter family, at 968,889 to 969,827
_00891
CCNA_00892: CCNA_00892 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 970,314 to 972,578
_00892
CCNA_00893: CCNA_00893 - helix-turn-helix DNA-binding protein, at 972,738 to 973,802
_00893
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.353 kb on + strand, within CCNA_00891 at 969.361 kb on - strand, within CCNA_00891 at 969.382 kb on - strand, within CCNA_00891 at 969.425 kb on - strand, within CCNA_00891 at 969.427 kb on + strand, within CCNA_00891 at 969.452 kb on + strand, within CCNA_00891 at 969.490 kb on + strand, within CCNA_00891 at 969.503 kb on - strand, within CCNA_00891 at 969.517 kb on - strand, within CCNA_00891 at 969.517 kb on - strand, within CCNA_00891 at 969.527 kb on - strand, within CCNA_00891 at 969.562 kb on + strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.572 kb on + strand, within CCNA_00891 at 969.575 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.580 kb on - strand, within CCNA_00891 at 969.612 kb on + strand, within CCNA_00891 at 969.632 kb on - strand, within CCNA_00891 at 969.637 kb on - strand, within CCNA_00891 at 969.677 kb on - strand, within CCNA_00891 at 969.704 kb on + strand, within CCNA_00891 at 969.704 kb on + strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.712 kb on - strand, within CCNA_00891 at 969.713 kb on - strand, within CCNA_00891 at 969.713 kb on - strand, within CCNA_00891 at 969.717 kb on - strand, within CCNA_00891 at 969.742 kb on + strand at 969.749 kb on - strand at 969.749 kb on - strand at 969.767 kb on + strand at 969.770 kb on - strand at 969.773 kb on + strand at 969.773 kb on + strand at 969.782 kb on + strand at 969.790 kb on - strand at 969.800 kb on + strand at 969.872 kb on - strand at 969.977 kb on - strand at 969.988 kb on + strand at 969.994 kb on + strand at 969.994 kb on + strand at 969.995 kb on + strand at 969.995 kb on + strand at 970.002 kb on - strand at 970.003 kb on - strand at 970.021 kb on - strand at 970.035 kb on - strand at 970.045 kb on + strand at 970.092 kb on + strand at 970.099 kb on + strand at 970.100 kb on + strand at 970.112 kb on + strand at 970.112 kb on + strand at 970.125 kb on - strand at 970.166 kb on + strand at 970.168 kb on + strand at 970.174 kb on - strand at 970.183 kb on + strand at 970.191 kb on - strand at 970.236 kb on + strand at 970.247 kb on + strand at 970.253 kb on + strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.271 kb on + strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.281 kb on - strand at 970.291 kb on - strand at 970.400 kb on + strand at 970.486 kb on + strand at 970.619 kb on + strand, within CCNA_00892 at 970.693 kb on - strand, within CCNA_00892 at 970.774 kb on - strand, within CCNA_00892 at 970.849 kb on - strand, within CCNA_00892 at 970.856 kb on + strand, within CCNA_00892 at 970.856 kb on + strand, within CCNA_00892 at 970.864 kb on - strand, within CCNA_00892 at 970.871 kb on + strand, within CCNA_00892 at 970.879 kb on - strand, within CCNA_00892 at 970.879 kb on - strand, within CCNA_00892 at 970.879 kb on - strand, within CCNA_00892 at 970.879 kb on - strand, within CCNA_00892 at 970.978 kb on - strand, within CCNA_00892 at 970.978 kb on - strand, within CCNA_00892 at 971.647 kb on + strand, within CCNA_00892 at 971.744 kb on + strand, within CCNA_00892 at 971.945 kb on - strand, within CCNA_00892 at 972.224 kb on + strand, within CCNA_00892 at 972.232 kb on - strand, within CCNA_00892 at 972.539 kb on + strand at 972.548 kb on - strand at 972.560 kb on + strand at 972.568 kb on - strand at 972.667 kb on + strand at 972.678 kb on + strand at 972.678 kb on + strand at 972.678 kb on + strand at 972.686 kb on - strand at 972.686 kb on - strand at 972.686 kb on - strand at 972.755 kb on - strand at 972.766 kb on - strand at 973.393 kb on + strand, within CCNA_00893 at 973.481 kb on + strand, within CCNA_00893 at 973.523 kb on + strand, within CCNA_00893 at 973.523 kb on + strand, within CCNA_00893
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 969,353 + CCNA_00891 0.49 -0.5 969,361 - CCNA_00891 0.50 +0.0 969,382 - CCNA_00891 0.53 -0.4 969,425 - CCNA_00891 0.57 -0.3 969,427 + CCNA_00891 0.57 -0.1 969,452 + CCNA_00891 0.60 -0.5 969,490 + CCNA_00891 0.64 -0.1 969,503 - CCNA_00891 0.65 +0.4 969,517 - CCNA_00891 0.67 -2.7 969,517 - CCNA_00891 0.67 +0.9 969,527 - CCNA_00891 0.68 -0.3 969,562 + CCNA_00891 0.72 -0.8 969,572 + CCNA_00891 0.73 +0.4 969,572 + CCNA_00891 0.73 -1.2 969,575 - CCNA_00891 0.73 -0.9 969,580 - CCNA_00891 0.74 -0.1 969,580 - CCNA_00891 0.74 -0.3 969,580 - CCNA_00891 0.74 -0.0 969,580 - CCNA_00891 0.74 +0.8 969,580 - CCNA_00891 0.74 -0.5 969,612 + CCNA_00891 0.77 +0.4 969,632 - CCNA_00891 0.79 +1.2 969,637 - CCNA_00891 0.80 -0.1 969,677 - CCNA_00891 0.84 -1.4 969,704 + CCNA_00891 0.87 +0.1 969,704 + CCNA_00891 0.87 -0.9 969,712 - CCNA_00891 0.88 -1.0 969,712 - CCNA_00891 0.88 +0.4 969,712 - CCNA_00891 0.88 +1.1 969,713 - CCNA_00891 0.88 +0.3 969,713 - CCNA_00891 0.88 +0.4 969,717 - CCNA_00891 0.88 +1.0 969,742 + +0.1 969,749 - +0.5 969,749 - +0.4 969,767 + +0.3 969,770 - -1.3 969,773 + +0.3 969,773 + +0.2 969,782 + -1.4 969,790 - -0.1 969,800 + -0.1 969,872 - -1.5 969,977 - +0.4 969,988 + -0.3 969,994 + -0.2 969,994 + +1.2 969,995 + -0.5 969,995 + +0.2 970,002 - -0.6 970,003 - -0.2 970,021 - -0.5 970,035 - -0.2 970,045 + +0.5 970,092 + +1.5 970,099 + +0.6 970,100 + +0.7 970,112 + +1.5 970,112 + -0.9 970,125 - +0.0 970,166 + +0.5 970,168 + -0.8 970,174 - -0.4 970,183 + -1.9 970,191 - -0.1 970,236 + +0.3 970,247 + -0.3 970,253 + +0.2 970,255 - -0.1 970,255 - -2.0 970,255 - -0.4 970,255 - -2.3 970,271 + -0.5 970,271 + +1.1 970,271 + -1.3 970,271 + -0.2 970,279 - +1.9 970,279 - +0.2 970,281 - -2.2 970,291 - +1.4 970,400 + -0.7 970,486 + +0.1 970,619 + CCNA_00892 0.13 -2.2 970,693 - CCNA_00892 0.17 -2.4 970,774 - CCNA_00892 0.20 -0.1 970,849 - CCNA_00892 0.24 +0.6 970,856 + CCNA_00892 0.24 -0.8 970,856 + CCNA_00892 0.24 +1.5 970,864 - CCNA_00892 0.24 -0.1 970,871 + CCNA_00892 0.25 -0.4 970,879 - CCNA_00892 0.25 -0.1 970,879 - CCNA_00892 0.25 -1.0 970,879 - CCNA_00892 0.25 -0.5 970,879 - CCNA_00892 0.25 +1.5 970,978 - CCNA_00892 0.29 -0.4 970,978 - CCNA_00892 0.29 +0.9 971,647 + CCNA_00892 0.59 -1.1 971,744 + CCNA_00892 0.63 +0.9 971,945 - CCNA_00892 0.72 +1.1 972,224 + CCNA_00892 0.84 +0.1 972,232 - CCNA_00892 0.85 -1.6 972,539 + -1.0 972,548 - +0.9 972,560 + +0.4 972,568 - +0.6 972,667 + -0.2 972,678 + +0.4 972,678 + +1.2 972,678 + -0.8 972,686 - +0.5 972,686 - -0.1 972,686 - +0.0 972,755 - +0.0 972,766 - -1.9 973,393 + CCNA_00893 0.62 -0.2 973,481 + CCNA_00893 0.70 -1.0 973,523 + CCNA_00893 0.74 -0.4 973,523 + CCNA_00893 0.74 -0.2
Or see this region's nucleotide sequence