Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00876 and CCNA_00877 are separated by 31 nucleotides CCNA_00877 and CCNA_00878 are separated by 272 nucleotides CCNA_00878 and CCNA_00879 are separated by 156 nucleotides
CCNA_00876: CCNA_00876 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 953,903 to 954,307
_00876
CCNA_00877: CCNA_00877 - hypothetical protein, at 954,339 to 954,947
_00877
CCNA_00878: CCNA_00878 - ATP-dependent RNA helicase, at 955,220 to 956,650
_00878
CCNA_00879: CCNA_00879 - PAS-family sensor histidine kinase, at 956,807 to 959,071
_00879
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.242 kb on + strand, within CCNA_00876 at 954.250 kb on - strand, within CCNA_00876 at 954.297 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.344 kb on + strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.357 kb on + strand at 954.362 kb on + strand at 954.362 kb on + strand at 954.362 kb on + strand at 954.362 kb on + strand at 954.362 kb on + strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.372 kb on + strand at 954.372 kb on + strand at 954.403 kb on - strand, within CCNA_00877 at 954.439 kb on + strand, within CCNA_00877 at 954.439 kb on + strand, within CCNA_00877 at 954.439 kb on + strand, within CCNA_00877 at 954.440 kb on + strand, within CCNA_00877 at 954.441 kb on - strand, within CCNA_00877 at 954.442 kb on - strand, within CCNA_00877 at 954.447 kb on - strand, within CCNA_00877 at 954.447 kb on - strand, within CCNA_00877 at 954.447 kb on - strand, within CCNA_00877 at 954.448 kb on - strand, within CCNA_00877 at 954.448 kb on - strand, within CCNA_00877 at 954.467 kb on - strand, within CCNA_00877 at 954.504 kb on - strand, within CCNA_00877 at 954.515 kb on - strand, within CCNA_00877 at 954.560 kb on + strand, within CCNA_00877 at 954.568 kb on - strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.586 kb on + strand, within CCNA_00877 at 954.586 kb on + strand, within CCNA_00877 at 954.588 kb on - strand, within CCNA_00877 at 954.588 kb on - strand, within CCNA_00877 at 954.606 kb on + strand, within CCNA_00877 at 954.655 kb on + strand, within CCNA_00877 at 954.663 kb on - strand, within CCNA_00877 at 954.688 kb on + strand, within CCNA_00877 at 954.690 kb on + strand, within CCNA_00877 at 954.695 kb on + strand, within CCNA_00877 at 954.713 kb on - strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.716 kb on + strand, within CCNA_00877 at 954.723 kb on - strand, within CCNA_00877 at 954.723 kb on - strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.745 kb on + strand, within CCNA_00877 at 954.862 kb on + strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.888 kb on + strand at 954.893 kb on + strand at 954.893 kb on + strand at 954.898 kb on + strand at 954.906 kb on - strand at 954.911 kb on - strand at 954.919 kb on - strand at 954.942 kb on + strand at 954.942 kb on + strand at 954.942 kb on + strand at 954.942 kb on + strand at 954.950 kb on - strand at 954.957 kb on + strand at 955.089 kb on + strand at 955.142 kb on + strand at 955.142 kb on + strand at 955.150 kb on - strand at 955.162 kb on + strand at 955.170 kb on - strand at 955.171 kb on + strand at 955.190 kb on + strand at 955.210 kb on - strand at 956.413 kb on + strand, within CCNA_00878 at 956.421 kb on - strand, within CCNA_00878 at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.537 kb on - strand at 956.539 kb on + strand at 956.539 kb on + strand at 956.547 kb on - strand at 956.547 kb on - strand at 956.547 kb on - strand at 956.547 kb on - strand at 956.547 kb on - strand at 956.600 kb on + strand at 956.600 kb on + strand at 956.691 kb on + strand at 956.703 kb on - strand at 956.757 kb on - strand at 956.769 kb on - strand at 956.879 kb on + strand at 956.900 kb on - strand at 956.901 kb on - strand at 956.912 kb on - strand at 956.923 kb on - strand at 956.923 kb on - strand at 956.984 kb on - strand at 956.994 kb on + strand at 957.065 kb on + strand, within CCNA_00879 at 957.094 kb on + strand, within CCNA_00879 at 957.094 kb on + strand, within CCNA_00879 at 957.102 kb on - strand, within CCNA_00879 at 957.102 kb on - strand, within CCNA_00879 at 957.218 kb on + strand, within CCNA_00879 at 957.218 kb on + strand, within CCNA_00879 at 957.220 kb on + strand, within CCNA_00879 at 957.226 kb on - strand, within CCNA_00879 at 957.231 kb on - strand, within CCNA_00879 at 957.238 kb on + strand, within CCNA_00879 at 957.274 kb on + strand, within CCNA_00879 at 957.309 kb on - strand, within CCNA_00879 at 957.312 kb on + strand, within CCNA_00879 at 957.320 kb on - strand, within CCNA_00879 at 957.320 kb on - strand, within CCNA_00879 at 957.368 kb on + strand, within CCNA_00879 at 957.370 kb on + strand, within CCNA_00879 at 957.406 kb on + strand, within CCNA_00879 at 957.406 kb on + strand, within CCNA_00879 at 957.406 kb on + strand, within CCNA_00879 at 957.414 kb on - strand, within CCNA_00879 at 957.414 kb on - strand, within CCNA_00879 at 957.415 kb on - strand, within CCNA_00879 at 957.429 kb on - strand, within CCNA_00879 at 957.431 kb on + strand, within CCNA_00879 at 957.436 kb on + strand, within CCNA_00879 at 957.436 kb on + strand, within CCNA_00879 at 957.436 kb on + strand, within CCNA_00879 at 957.436 kb on + strand, within CCNA_00879 at 957.439 kb on - strand, within CCNA_00879 at 957.465 kb on - strand, within CCNA_00879 at 957.484 kb on - strand, within CCNA_00879 at 957.492 kb on - strand, within CCNA_00879 at 957.581 kb on - strand, within CCNA_00879 at 957.609 kb on + strand, within CCNA_00879
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 954,242 + CCNA_00876 0.84 +0.5 954,250 - CCNA_00876 0.86 +0.8 954,297 + -1.3 954,337 + -0.0 954,337 + -0.8 954,337 + -2.8 954,337 + +1.1 954,337 + -1.0 954,337 + -1.8 954,344 + +0.6 954,345 - +0.6 954,345 - -1.2 954,345 - +0.3 954,357 + +1.0 954,362 + -0.1 954,362 + -1.6 954,362 + -1.6 954,362 + -1.0 954,362 + -1.1 954,370 - -0.4 954,370 - +1.5 954,370 - -0.7 954,370 - +0.3 954,370 - +0.3 954,370 - -0.3 954,372 + -1.2 954,372 + -0.3 954,403 - CCNA_00877 0.11 +1.6 954,439 + CCNA_00877 0.16 +2.4 954,439 + CCNA_00877 0.16 -1.2 954,439 + CCNA_00877 0.16 -0.6 954,440 + CCNA_00877 0.17 -2.2 954,441 - CCNA_00877 0.17 -0.1 954,442 - CCNA_00877 0.17 -2.3 954,447 - CCNA_00877 0.18 -0.4 954,447 - CCNA_00877 0.18 -1.1 954,447 - CCNA_00877 0.18 -0.2 954,448 - CCNA_00877 0.18 -0.3 954,448 - CCNA_00877 0.18 +0.9 954,467 - CCNA_00877 0.21 -0.6 954,504 - CCNA_00877 0.27 -0.4 954,515 - CCNA_00877 0.29 +0.1 954,560 + CCNA_00877 0.36 +0.2 954,568 - CCNA_00877 0.38 -0.7 954,580 + CCNA_00877 0.40 -0.1 954,580 + CCNA_00877 0.40 -1.2 954,586 + CCNA_00877 0.41 -0.7 954,586 + CCNA_00877 0.41 +0.5 954,588 - CCNA_00877 0.41 +0.2 954,588 - CCNA_00877 0.41 -0.8 954,606 + CCNA_00877 0.44 -2.7 954,655 + CCNA_00877 0.52 -2.0 954,663 - CCNA_00877 0.53 +2.4 954,688 + CCNA_00877 0.57 -1.3 954,690 + CCNA_00877 0.58 -0.2 954,695 + CCNA_00877 0.58 +0.3 954,713 - CCNA_00877 0.61 +1.5 954,715 + CCNA_00877 0.62 +0.7 954,715 + CCNA_00877 0.62 -0.5 954,716 + CCNA_00877 0.62 -0.0 954,723 - CCNA_00877 0.63 -0.0 954,723 - CCNA_00877 0.63 +0.1 954,744 - CCNA_00877 0.67 -0.1 954,745 + CCNA_00877 0.67 +1.3 954,862 + CCNA_00877 0.86 -0.6 954,870 - CCNA_00877 0.87 -1.1 954,888 + -1.4 954,893 + +0.1 954,893 + -1.0 954,898 + +0.5 954,906 - -0.5 954,911 - -1.1 954,919 - -1.5 954,942 + +0.4 954,942 + -0.2 954,942 + -1.4 954,942 + -0.2 954,950 - +0.1 954,957 + +0.1 955,089 + -0.1 955,142 + +0.1 955,142 + +0.5 955,150 - +0.3 955,162 + -0.1 955,170 - -0.2 955,171 + +0.7 955,190 + -0.1 955,210 - -0.6 956,413 + CCNA_00878 0.83 +0.4 956,421 - CCNA_00878 0.84 +0.3 956,529 + +0.9 956,529 + -0.3 956,529 + -0.1 956,529 + +0.3 956,529 + +0.0 956,529 + -0.3 956,529 + +0.7 956,537 - +0.7 956,539 + +0.2 956,539 + +0.0 956,547 - -0.3 956,547 - -0.9 956,547 - -0.1 956,547 - +0.5 956,547 - +0.3 956,600 + +0.5 956,600 + -0.4 956,691 + +0.1 956,703 - +0.4 956,757 - -0.0 956,769 - +0.4 956,879 + +0.9 956,900 - -0.7 956,901 - -0.5 956,912 - +0.3 956,923 - -2.6 956,923 - -0.2 956,984 - -0.3 956,994 + -1.2 957,065 + CCNA_00879 0.11 +0.0 957,094 + CCNA_00879 0.13 -0.4 957,094 + CCNA_00879 0.13 -2.0 957,102 - CCNA_00879 0.13 -0.2 957,102 - CCNA_00879 0.13 +0.4 957,218 + CCNA_00879 0.18 +0.7 957,218 + CCNA_00879 0.18 +0.8 957,220 + CCNA_00879 0.18 +0.4 957,226 - CCNA_00879 0.18 -1.7 957,231 - CCNA_00879 0.19 -0.1 957,238 + CCNA_00879 0.19 -0.4 957,274 + CCNA_00879 0.21 -0.3 957,309 - CCNA_00879 0.22 +0.9 957,312 + CCNA_00879 0.22 +0.0 957,320 - CCNA_00879 0.23 -2.5 957,320 - CCNA_00879 0.23 -0.0 957,368 + CCNA_00879 0.25 +0.7 957,370 + CCNA_00879 0.25 -1.2 957,406 + CCNA_00879 0.26 +0.2 957,406 + CCNA_00879 0.26 +0.2 957,406 + CCNA_00879 0.26 +0.9 957,414 - CCNA_00879 0.27 -0.7 957,414 - CCNA_00879 0.27 +0.3 957,415 - CCNA_00879 0.27 -0.3 957,429 - CCNA_00879 0.27 -1.4 957,431 + CCNA_00879 0.28 +0.3 957,436 + CCNA_00879 0.28 -0.7 957,436 + CCNA_00879 0.28 +0.5 957,436 + CCNA_00879 0.28 +0.1 957,436 + CCNA_00879 0.28 -0.3 957,439 - CCNA_00879 0.28 +0.1 957,465 - CCNA_00879 0.29 -0.4 957,484 - CCNA_00879 0.30 -0.7 957,492 - CCNA_00879 0.30 +0.8 957,581 - CCNA_00879 0.34 +0.4 957,609 + CCNA_00879 0.35 +0.1
Or see this region's nucleotide sequence