Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00804

Experiment: PYE with CHIR-090 10 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00801 and CCNA_00802 are separated by 18 nucleotidesCCNA_00802 and CCNA_00803 are separated by 158 nucleotidesCCNA_00803 and CCNA_00804 are separated by 64 nucleotidesCCNA_00804 and CCNA_00805 are separated by 229 nucleotidesCCNA_00805 and CCNA_00806 overlap by 1 nucleotides CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557 _00801 CCNA_00802: CCNA_00802 - cyd operon protein YbgT, at 867,576 to 867,695 _00802 CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309 _00803 CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 CCNA_00805: CCNA_00805 - GTP-binding protein YihA, at 869,089 to 869,778 _00805 CCNA_00806: CCNA_00806 - inner membrane protein translocase component yidC, at 869,778 to 871,625 _00806 Position (kb) 868 869Strain fitness (log2 ratio) -2 -1 0 1 2 3at 867.381 kb on - strand, within CCNA_00801at 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.484 kb on - strandat 867.484 kb on - strandat 867.484 kb on - strandat 867.499 kb on - strandat 867.500 kb on + strandat 867.509 kb on - strandat 867.509 kb on - strandat 867.551 kb on + strandat 867.551 kb on + strandat 867.564 kb on - strandat 867.584 kb on - strandat 867.609 kb on - strand, within CCNA_00802at 867.629 kb on + strand, within CCNA_00802at 867.637 kb on - strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.657 kb on - strand, within CCNA_00802at 867.686 kb on - strandat 867.711 kb on + strandat 867.879 kb on + strandat 867.887 kb on - strandat 867.890 kb on + strandat 867.916 kb on + strand, within CCNA_00803at 867.947 kb on + strand, within CCNA_00803at 867.968 kb on - strand, within CCNA_00803at 867.969 kb on + strand, within CCNA_00803at 867.977 kb on - strand, within CCNA_00803at 868.005 kb on + strand, within CCNA_00803at 868.013 kb on - strand, within CCNA_00803at 868.020 kb on + strand, within CCNA_00803at 868.020 kb on + strand, within CCNA_00803at 868.053 kb on + strand, within CCNA_00803at 868.171 kb on + strand, within CCNA_00803at 868.176 kb on + strand, within CCNA_00803at 868.184 kb on - strand, within CCNA_00803at 868.188 kb on + strand, within CCNA_00803at 868.200 kb on + strand, within CCNA_00803at 868.275 kb on + strandat 868.286 kb on + strandat 868.286 kb on + strandat 868.291 kb on + strandat 868.294 kb on - strandat 868.303 kb on + strandat 868.311 kb on - strandat 868.372 kb on + strandat 868.379 kb on - strandat 868.417 kb on + strandat 868.465 kb on + strand, within CCNA_00804at 868.483 kb on + strand, within CCNA_00804at 868.491 kb on - strand, within CCNA_00804at 868.521 kb on + strand, within CCNA_00804at 868.527 kb on + strand, within CCNA_00804at 868.590 kb on - strand, within CCNA_00804at 868.606 kb on + strand, within CCNA_00804at 868.616 kb on + strand, within CCNA_00804at 868.631 kb on + strand, within CCNA_00804at 868.646 kb on - strand, within CCNA_00804at 868.662 kb on - strand, within CCNA_00804at 868.667 kb on - strand, within CCNA_00804at 868.689 kb on - strand, within CCNA_00804at 868.708 kb on + strand, within CCNA_00804at 868.716 kb on - strand, within CCNA_00804at 868.716 kb on - strand, within CCNA_00804at 868.724 kb on - strand, within CCNA_00804at 868.727 kb on + strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.742 kb on + strand, within CCNA_00804at 868.750 kb on - strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.797 kb on + strand, within CCNA_00804at 868.836 kb on + strandat 868.844 kb on - strandat 868.893 kb on + strandat 868.914 kb on + strandat 868.917 kb on - strandat 868.969 kb on - strandat 869.004 kb on - strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.009 kb on + strandat 869.011 kb on + strandat 869.012 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.017 kb on - strandat 869.027 kb on - strandat 869.058 kb on - strandat 869.077 kb on - strandat 869.704 kb on - strand, within CCNA_00805at 869.711 kb on + strandat 869.750 kb on + strandat 869.776 kb on + strandat 869.802 kb on - strandat 869.802 kb on - strandat 869.808 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
remove
867,381 - CCNA_00801 0.85 +0.0
867,476 + +0.7
867,476 + +0.1
867,476 + +0.1
867,476 + +0.3
867,484 - -0.1
867,484 - -1.9
867,484 - +1.3
867,499 - +0.0
867,500 + -0.5
867,509 - -0.4
867,509 - -0.3
867,551 + -1.0
867,551 + +0.0
867,564 - -0.4
867,584 - -0.6
867,609 - CCNA_00802 0.28 +0.0
867,629 + CCNA_00802 0.44 -0.0
867,637 - CCNA_00802 0.51 +1.6
867,649 + CCNA_00802 0.61 +0.1
867,657 - CCNA_00802 0.68 -1.7
867,686 - -1.0
867,711 + +1.0
867,879 + -0.3
867,887 - -0.5
867,890 + +0.3
867,916 + CCNA_00803 0.14 +0.6
867,947 + CCNA_00803 0.20 -0.7
867,968 - CCNA_00803 0.25 +1.3
867,969 + CCNA_00803 0.25 +0.7
867,977 - CCNA_00803 0.27 -1.9
868,005 + CCNA_00803 0.33 -0.0
868,013 - CCNA_00803 0.35 -0.3
868,020 + CCNA_00803 0.36 +0.7
868,020 + CCNA_00803 0.36 -0.9
868,053 + CCNA_00803 0.44 +1.2
868,171 + CCNA_00803 0.70 -0.3
868,176 + CCNA_00803 0.71 -0.2
868,184 - CCNA_00803 0.72 -0.3
868,188 + CCNA_00803 0.73 +0.1
868,200 + CCNA_00803 0.76 +0.3
868,275 + +0.9
868,286 + -0.8
868,286 + +0.3
868,291 + -0.7
868,294 - +0.2
868,303 + -0.1
868,311 - +0.6
868,372 + +0.3
868,379 - +0.3
868,417 + +0.5
868,465 + CCNA_00804 0.19 +0.5
868,483 + CCNA_00804 0.22 +0.2
868,491 - CCNA_00804 0.24 +0.6
868,521 + CCNA_00804 0.30 +0.0
868,527 + CCNA_00804 0.31 -0.1
868,590 - CCNA_00804 0.44 -0.4
868,606 + CCNA_00804 0.48 +0.9
868,616 + CCNA_00804 0.50 +0.2
868,631 + CCNA_00804 0.53 -0.0
868,646 - CCNA_00804 0.56 +0.4
868,662 - CCNA_00804 0.59 +0.4
868,667 - CCNA_00804 0.60 -0.5
868,689 - CCNA_00804 0.65 +0.5
868,708 + CCNA_00804 0.69 +1.2
868,716 - CCNA_00804 0.70 +0.7
868,716 - CCNA_00804 0.70 +1.6
868,724 - CCNA_00804 0.72 -0.2
868,727 + CCNA_00804 0.73 +0.2
868,742 + CCNA_00804 0.76 +0.2
868,742 + CCNA_00804 0.76 +3.3
868,742 + CCNA_00804 0.76 +0.5
868,750 - CCNA_00804 0.77 +0.1
868,797 + CCNA_00804 0.87 -2.2
868,797 + CCNA_00804 0.87 -0.5
868,836 + +0.0
868,844 - +1.0
868,893 + -0.6
868,914 + -0.2
868,917 - +0.1
868,969 - -0.4
869,004 - +1.5
869,009 + -2.1
869,009 + -0.1
869,009 + -0.8
869,011 + +0.1
869,012 - -2.0
869,017 - +2.6
869,017 - -0.0
869,017 - +0.2
869,027 - -0.0
869,058 - -0.0
869,077 - +0.1
869,704 - CCNA_00805 0.89 +1.1
869,711 + -1.0
869,750 + -0.5
869,776 + -0.9
869,802 - -0.6
869,802 - +0.0
869,808 - +1.3

Or see this region's nucleotide sequence