Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00780 and CCNA_00781 are separated by 151 nucleotides CCNA_00781 and CCNA_R0015 are separated by 109 nucleotides CCNA_R0015 and CCNA_00782 are separated by 110 nucleotides CCNA_00782 and CCNA_00783 are separated by 341 nucleotides
CCNA_00780: CCNA_00780 - N-formylglutamate deformylase, at 840,760 to 841,686
_00780
CCNA_00781: CCNA_00781 - two-component receiver protein CpdR, at 841,838 to 842,194
_00781
CCNA_R0015: CCNA_R0015 - tRNA-Val, at 842,304 to 842,378
_R0015
CCNA_00782: CCNA_00782 - aminobenzoyl-glutamate transport protein, at 842,489 to 844,108
_00782
CCNA_00783: CCNA_00783 - secreted protease precursor sapA, at 844,450 to 846,426
_00783
Position (kb) 842
843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 841.517 kb on + strand, within CCNA_00780 at 841.524 kb on + strand, within CCNA_00780 at 841.563 kb on - strand, within CCNA_00780 at 841.569 kb on - strand, within CCNA_00780 at 841.578 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.588 kb on + strand, within CCNA_00780 at 841.596 kb on - strand at 841.631 kb on - strand at 841.646 kb on + strand at 841.757 kb on + strand at 841.759 kb on + strand at 841.797 kb on - strand at 841.919 kb on + strand, within CCNA_00781 at 841.919 kb on + strand, within CCNA_00781 at 841.924 kb on + strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.927 kb on - strand, within CCNA_00781 at 841.957 kb on - strand, within CCNA_00781 at 842.013 kb on + strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.021 kb on - strand, within CCNA_00781 at 842.046 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.099 kb on + strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.107 kb on - strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.134 kb on + strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.142 kb on - strand, within CCNA_00781 at 842.461 kb on + strand at 842.500 kb on - strand at 842.522 kb on - strand at 842.557 kb on - strand at 842.559 kb on + strand at 842.567 kb on - strand at 842.567 kb on - strand at 842.579 kb on - strand at 842.604 kb on + strand at 842.604 kb on + strand at 842.604 kb on + strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.612 kb on - strand at 842.614 kb on + strand at 842.614 kb on + strand at 842.614 kb on + strand at 842.622 kb on - strand at 842.633 kb on + strand at 842.720 kb on + strand, within CCNA_00782 at 842.720 kb on + strand, within CCNA_00782 at 842.721 kb on - strand, within CCNA_00782 at 842.728 kb on - strand, within CCNA_00782 at 842.763 kb on + strand, within CCNA_00782 at 842.793 kb on + strand, within CCNA_00782 at 842.805 kb on - strand, within CCNA_00782 at 842.810 kb on + strand, within CCNA_00782 at 842.840 kb on + strand, within CCNA_00782 at 842.840 kb on + strand, within CCNA_00782 at 842.848 kb on - strand, within CCNA_00782 at 842.858 kb on + strand, within CCNA_00782 at 842.882 kb on + strand, within CCNA_00782 at 842.995 kb on + strand, within CCNA_00782 at 843.029 kb on - strand, within CCNA_00782 at 843.054 kb on + strand, within CCNA_00782 at 843.132 kb on + strand, within CCNA_00782 at 843.132 kb on + strand, within CCNA_00782 at 843.140 kb on - strand, within CCNA_00782 at 843.140 kb on - strand, within CCNA_00782 at 843.154 kb on - strand, within CCNA_00782 at 843.154 kb on - strand, within CCNA_00782 at 843.162 kb on + strand, within CCNA_00782 at 843.203 kb on + strand, within CCNA_00782 at 843.204 kb on - strand, within CCNA_00782 at 843.233 kb on - strand, within CCNA_00782 at 843.238 kb on - strand, within CCNA_00782 at 843.243 kb on - strand, within CCNA_00782 at 843.262 kb on - strand, within CCNA_00782 at 843.303 kb on + strand, within CCNA_00782 at 843.392 kb on - strand, within CCNA_00782 at 843.394 kb on - strand, within CCNA_00782 at 843.394 kb on - strand, within CCNA_00782 at 843.404 kb on + strand, within CCNA_00782 at 843.414 kb on + strand, within CCNA_00782 at 843.495 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.591 kb on + strand, within CCNA_00782 at 843.596 kb on + strand, within CCNA_00782 at 843.599 kb on - strand, within CCNA_00782 at 843.599 kb on - strand, within CCNA_00782 at 843.599 kb on - strand, within CCNA_00782 at 843.604 kb on - strand, within CCNA_00782 at 843.647 kb on + strand, within CCNA_00782 at 843.655 kb on - strand, within CCNA_00782 at 843.700 kb on - strand, within CCNA_00782 at 843.726 kb on + strand, within CCNA_00782 at 843.727 kb on - strand, within CCNA_00782 at 843.727 kb on - strand, within CCNA_00782 at 843.731 kb on + strand, within CCNA_00782 at 843.731 kb on + strand, within CCNA_00782 at 843.736 kb on + strand, within CCNA_00782 at 843.744 kb on - strand, within CCNA_00782 at 843.744 kb on - strand, within CCNA_00782 at 843.760 kb on + strand, within CCNA_00782 at 843.766 kb on + strand, within CCNA_00782 at 843.791 kb on - strand, within CCNA_00782 at 843.801 kb on - strand, within CCNA_00782 at 843.801 kb on - strand, within CCNA_00782 at 843.803 kb on + strand, within CCNA_00782 at 843.811 kb on - strand, within CCNA_00782 at 843.844 kb on - strand, within CCNA_00782 at 843.875 kb on + strand, within CCNA_00782 at 843.875 kb on + strand, within CCNA_00782 at 843.875 kb on + strand, within CCNA_00782 at 843.883 kb on - strand, within CCNA_00782 at 843.883 kb on - strand, within CCNA_00782 at 843.905 kb on + strand, within CCNA_00782 at 843.937 kb on + strand, within CCNA_00782 at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.947 kb on + strand at 843.953 kb on + strand at 843.953 kb on + strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.955 kb on - strand at 843.956 kb on - strand at 843.960 kb on - strand at 843.990 kb on - strand at 843.991 kb on - strand at 844.012 kb on - strand at 844.034 kb on - strand at 844.052 kb on + strand at 844.052 kb on + strand at 844.069 kb on - strand at 844.152 kb on + strand at 844.157 kb on + strand at 844.160 kb on - strand at 844.174 kb on + strand at 844.174 kb on + strand at 844.182 kb on - strand at 844.182 kb on - strand at 844.206 kb on + strand at 844.206 kb on + strand at 844.234 kb on + strand at 844.242 kb on - strand at 844.288 kb on + strand at 844.296 kb on - strand at 844.333 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.395 kb on + strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.403 kb on - strand at 844.417 kb on + strand at 844.417 kb on + strand at 844.438 kb on + strand at 844.459 kb on + strand at 844.486 kb on + strand at 844.486 kb on + strand at 844.486 kb on + strand at 844.494 kb on - strand at 844.494 kb on - strand at 844.518 kb on - strand at 844.568 kb on + strand at 844.594 kb on + strand at 844.597 kb on - strand at 844.633 kb on + strand at 844.634 kb on + strand at 844.664 kb on - strand, within CCNA_00783 at 844.682 kb on + strand, within CCNA_00783 at 844.686 kb on + strand, within CCNA_00783 at 844.707 kb on + strand, within CCNA_00783 at 844.707 kb on + strand, within CCNA_00783 at 844.707 kb on + strand, within CCNA_00783 at 844.774 kb on + strand, within CCNA_00783 at 844.804 kb on - strand, within CCNA_00783 at 844.846 kb on - strand, within CCNA_00783 at 844.859 kb on + strand, within CCNA_00783 at 844.859 kb on + strand, within CCNA_00783 at 844.862 kb on + strand, within CCNA_00783 at 844.864 kb on + strand, within CCNA_00783 at 844.873 kb on - strand, within CCNA_00783 at 844.892 kb on + strand, within CCNA_00783 at 844.945 kb on - strand, within CCNA_00783 at 844.985 kb on + strand, within CCNA_00783 at 844.985 kb on + strand, within CCNA_00783 at 844.987 kb on + strand, within CCNA_00783 at 844.993 kb on - strand, within CCNA_00783 at 845.019 kb on - strand, within CCNA_00783 at 845.048 kb on + strand, within CCNA_00783 at 845.048 kb on + strand, within CCNA_00783 at 845.056 kb on - strand, within CCNA_00783 at 845.056 kb on - strand, within CCNA_00783 at 845.089 kb on - strand, within CCNA_00783 at 845.102 kb on - strand, within CCNA_00783 at 845.102 kb on - strand, within CCNA_00783
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 841,517 + CCNA_00780 0.82 +0.5 841,524 + CCNA_00780 0.82 +0.9 841,563 - CCNA_00780 0.87 -1.2 841,569 - CCNA_00780 0.87 -0.4 841,578 + CCNA_00780 0.88 +0.1 841,588 + CCNA_00780 0.89 +0.1 841,588 + CCNA_00780 0.89 +0.2 841,596 - +0.8 841,631 - +0.4 841,646 + -1.9 841,757 + -0.4 841,759 + +0.4 841,797 - -1.1 841,919 + CCNA_00781 0.23 +0.7 841,919 + CCNA_00781 0.23 -0.2 841,924 + CCNA_00781 0.24 -0.5 841,927 - CCNA_00781 0.25 -1.3 841,927 - CCNA_00781 0.25 -0.4 841,957 - CCNA_00781 0.33 -0.9 842,013 + CCNA_00781 0.49 -0.3 842,021 - CCNA_00781 0.51 +0.8 842,021 - CCNA_00781 0.51 +0.1 842,021 - CCNA_00781 0.51 -0.6 842,021 - CCNA_00781 0.51 -1.0 842,046 + CCNA_00781 0.58 +0.9 842,099 + CCNA_00781 0.73 +0.7 842,099 + CCNA_00781 0.73 +1.0 842,099 + CCNA_00781 0.73 -0.2 842,099 + CCNA_00781 0.73 -1.3 842,099 + CCNA_00781 0.73 +0.1 842,107 - CCNA_00781 0.75 +1.0 842,107 - CCNA_00781 0.75 -0.5 842,107 - CCNA_00781 0.75 -0.4 842,107 - CCNA_00781 0.75 +0.1 842,107 - CCNA_00781 0.75 +0.4 842,134 + CCNA_00781 0.83 -0.4 842,134 + CCNA_00781 0.83 +1.0 842,134 + CCNA_00781 0.83 +0.8 842,134 + CCNA_00781 0.83 -0.2 842,134 + CCNA_00781 0.83 +0.7 842,134 + CCNA_00781 0.83 -0.6 842,134 + CCNA_00781 0.83 +0.3 842,134 + CCNA_00781 0.83 -3.3 842,142 - CCNA_00781 0.85 +0.1 842,142 - CCNA_00781 0.85 +2.5 842,142 - CCNA_00781 0.85 +0.4 842,142 - CCNA_00781 0.85 -1.3 842,142 - CCNA_00781 0.85 +1.2 842,461 + -0.2 842,500 - +1.5 842,522 - +0.7 842,557 - +0.1 842,559 + -0.2 842,567 - +1.0 842,567 - +0.9 842,579 - +0.1 842,604 + -0.2 842,604 + -0.6 842,604 + -1.7 842,612 - +0.1 842,612 - +0.8 842,612 - -0.3 842,614 + +0.3 842,614 + -2.1 842,614 + +0.1 842,622 - +0.4 842,633 + -0.3 842,720 + CCNA_00782 0.14 -2.2 842,720 + CCNA_00782 0.14 -0.0 842,721 - CCNA_00782 0.14 +0.5 842,728 - CCNA_00782 0.15 -0.1 842,763 + CCNA_00782 0.17 +0.3 842,793 + CCNA_00782 0.19 -1.1 842,805 - CCNA_00782 0.20 +0.7 842,810 + CCNA_00782 0.20 +1.1 842,840 + CCNA_00782 0.22 -0.4 842,840 + CCNA_00782 0.22 +0.5 842,848 - CCNA_00782 0.22 -1.0 842,858 + CCNA_00782 0.23 -0.5 842,882 + CCNA_00782 0.24 -1.0 842,995 + CCNA_00782 0.31 +0.2 843,029 - CCNA_00782 0.33 -0.7 843,054 + CCNA_00782 0.35 +0.3 843,132 + CCNA_00782 0.40 -1.1 843,132 + CCNA_00782 0.40 -0.4 843,140 - CCNA_00782 0.40 +0.3 843,140 - CCNA_00782 0.40 -0.2 843,154 - CCNA_00782 0.41 -0.0 843,154 - CCNA_00782 0.41 +1.9 843,162 + CCNA_00782 0.42 -0.2 843,203 + CCNA_00782 0.44 -0.2 843,204 - CCNA_00782 0.44 +0.4 843,233 - CCNA_00782 0.46 -0.9 843,238 - CCNA_00782 0.46 +0.6 843,243 - CCNA_00782 0.47 +0.3 843,262 - CCNA_00782 0.48 +0.4 843,303 + CCNA_00782 0.50 -1.2 843,392 - CCNA_00782 0.56 +1.5 843,394 - CCNA_00782 0.56 +0.4 843,394 - CCNA_00782 0.56 -1.0 843,404 + CCNA_00782 0.56 -1.3 843,414 + CCNA_00782 0.57 -1.0 843,495 + CCNA_00782 0.62 +0.1 843,591 + CCNA_00782 0.68 -0.8 843,591 + CCNA_00782 0.68 -0.9 843,591 + CCNA_00782 0.68 -0.2 843,591 + CCNA_00782 0.68 +0.6 843,596 + CCNA_00782 0.68 +1.5 843,599 - CCNA_00782 0.69 -0.6 843,599 - CCNA_00782 0.69 -1.0 843,599 - CCNA_00782 0.69 +0.3 843,604 - CCNA_00782 0.69 -0.4 843,647 + CCNA_00782 0.71 -0.6 843,655 - CCNA_00782 0.72 +1.1 843,700 - CCNA_00782 0.75 -1.2 843,726 + CCNA_00782 0.76 -0.3 843,727 - CCNA_00782 0.76 -1.0 843,727 - CCNA_00782 0.76 +0.3 843,731 + CCNA_00782 0.77 +1.8 843,731 + CCNA_00782 0.77 -0.1 843,736 + CCNA_00782 0.77 -2.1 843,744 - CCNA_00782 0.77 +0.2 843,744 - CCNA_00782 0.77 +0.2 843,760 + CCNA_00782 0.78 +1.4 843,766 + CCNA_00782 0.79 +0.7 843,791 - CCNA_00782 0.80 +0.6 843,801 - CCNA_00782 0.81 -0.1 843,801 - CCNA_00782 0.81 -1.1 843,803 + CCNA_00782 0.81 -0.3 843,811 - CCNA_00782 0.82 -0.8 843,844 - CCNA_00782 0.84 +0.1 843,875 + CCNA_00782 0.86 +0.3 843,875 + CCNA_00782 0.86 -0.6 843,875 + CCNA_00782 0.86 -1.5 843,883 - CCNA_00782 0.86 +0.3 843,883 - CCNA_00782 0.86 -0.5 843,905 + CCNA_00782 0.87 +1.6 843,937 + CCNA_00782 0.89 +0.1 843,947 + -0.3 843,947 + +0.1 843,947 + -0.9 843,947 + +0.7 843,947 + +0.0 843,947 + +0.9 843,953 + -2.5 843,953 + -0.7 843,955 - +1.0 843,955 - +0.1 843,955 - -0.8 843,955 - -0.5 843,955 - -0.7 843,955 - +0.5 843,955 - -2.4 843,956 - +0.8 843,960 - +0.5 843,990 - -0.5 843,991 - -0.1 844,012 - +0.1 844,034 - +0.4 844,052 + -1.1 844,052 + +2.4 844,069 - -0.4 844,152 + +0.5 844,157 + -2.0 844,160 - -1.2 844,174 + -1.0 844,174 + -0.8 844,182 - -0.3 844,182 - +0.4 844,206 + +0.2 844,206 + +0.5 844,234 + -0.7 844,242 - -1.5 844,288 + +1.0 844,296 - +1.1 844,333 + +0.0 844,395 + -0.3 844,395 + -0.4 844,395 + -0.3 844,395 + +0.2 844,395 + -0.4 844,403 - -0.3 844,403 - +2.1 844,403 - +0.3 844,403 - +0.6 844,403 - -1.6 844,403 - +0.1 844,417 + +0.1 844,417 + +1.2 844,438 + -0.2 844,459 + -0.8 844,486 + +0.2 844,486 + -1.1 844,486 + +0.0 844,494 - +0.5 844,494 - +0.4 844,518 - +0.4 844,568 + +0.8 844,594 + -2.1 844,597 - -0.6 844,633 + +0.3 844,634 + -1.2 844,664 - CCNA_00783 0.11 -0.0 844,682 + CCNA_00783 0.12 -1.2 844,686 + CCNA_00783 0.12 -0.2 844,707 + CCNA_00783 0.13 +0.1 844,707 + CCNA_00783 0.13 -0.3 844,707 + CCNA_00783 0.13 -2.2 844,774 + CCNA_00783 0.16 +0.8 844,804 - CCNA_00783 0.18 -1.1 844,846 - CCNA_00783 0.20 -0.8 844,859 + CCNA_00783 0.21 +0.2 844,859 + CCNA_00783 0.21 +0.7 844,862 + CCNA_00783 0.21 +1.0 844,864 + CCNA_00783 0.21 -2.6 844,873 - CCNA_00783 0.21 +0.7 844,892 + CCNA_00783 0.22 -0.4 844,945 - CCNA_00783 0.25 +1.7 844,985 + CCNA_00783 0.27 -0.2 844,985 + CCNA_00783 0.27 -0.8 844,987 + CCNA_00783 0.27 -0.4 844,993 - CCNA_00783 0.27 -0.8 845,019 - CCNA_00783 0.29 -1.6 845,048 + CCNA_00783 0.30 -0.1 845,048 + CCNA_00783 0.30 +1.6 845,056 - CCNA_00783 0.31 -0.5 845,056 - CCNA_00783 0.31 +1.2 845,089 - CCNA_00783 0.32 -2.4 845,102 - CCNA_00783 0.33 +0.2 845,102 - CCNA_00783 0.33 -1.1
Or see this region's nucleotide sequence