Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00766 and CCNA_00767 are separated by 37 nucleotides CCNA_00767 and CCNA_03936 are separated by 284 nucleotides CCNA_03936 and CCNA_00768 overlap by 65 nucleotides CCNA_00768 and CCNA_00769 overlap by 4 nucleotides CCNA_00769 and CCNA_00770 are separated by 83 nucleotides
CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180
_00766
CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421
_00767
CCNA_03936: CCNA_03936 - hypothetical protein, at 824,706 to 824,840
_03936
CCNA_00768: CCNA_00768 - hypothetical protein, at 824,776 to 825,000
_00768
CCNA_00769: CCNA_00769 - TetR family transcriptional regulator, at 824,997 to 825,644
_00769
CCNA_00770: CCNA_00770 - TetR family transcriptional regulator, at 825,728 to 826,336
_00770
Position (kb)
824
825
826 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 824.028 kb on + strand, within CCNA_00766 at 824.028 kb on + strand, within CCNA_00766 at 824.030 kb on + strand, within CCNA_00766 at 824.098 kb on + strand, within CCNA_00766 at 824.103 kb on + strand, within CCNA_00766 at 824.106 kb on - strand, within CCNA_00766 at 824.111 kb on - strand, within CCNA_00766 at 824.215 kb on + strand at 824.229 kb on + strand at 824.237 kb on - strand at 824.244 kb on - strand, within CCNA_00767 at 824.254 kb on - strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.309 kb on + strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.317 kb on - strand, within CCNA_00767 at 824.318 kb on - strand, within CCNA_00767 at 824.343 kb on + strand, within CCNA_00767 at 824.353 kb on - strand, within CCNA_00767 at 824.385 kb on - strand, within CCNA_00767 at 824.402 kb on + strand at 824.412 kb on + strand at 824.412 kb on + strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.420 kb on - strand at 824.424 kb on + strand at 824.432 kb on - strand at 824.441 kb on + strand at 824.461 kb on - strand at 824.599 kb on - strand at 824.808 kb on + strand at 824.808 kb on + strand at 824.808 kb on + strand at 824.816 kb on - strand at 824.863 kb on - strand, within CCNA_00768 at 824.888 kb on - strand, within CCNA_00768 at 824.909 kb on - strand, within CCNA_00768 at 824.925 kb on - strand, within CCNA_00768 at 824.940 kb on - strand, within CCNA_00768 at 825.019 kb on - strand at 825.065 kb on + strand, within CCNA_00769 at 825.074 kb on + strand, within CCNA_00769 at 825.127 kb on + strand, within CCNA_00769 at 825.127 kb on + strand, within CCNA_00769 at 825.135 kb on - strand, within CCNA_00769 at 825.169 kb on - strand, within CCNA_00769 at 825.218 kb on + strand, within CCNA_00769 at 825.253 kb on + strand, within CCNA_00769 at 825.314 kb on - strand, within CCNA_00769 at 825.327 kb on + strand, within CCNA_00769 at 825.327 kb on + strand, within CCNA_00769 at 825.381 kb on + strand, within CCNA_00769 at 825.436 kb on + strand, within CCNA_00769 at 825.444 kb on - strand, within CCNA_00769 at 825.454 kb on - strand, within CCNA_00769 at 825.456 kb on + strand, within CCNA_00769 at 825.456 kb on + strand, within CCNA_00769 at 825.459 kb on - strand, within CCNA_00769 at 825.464 kb on - strand, within CCNA_00769 at 825.485 kb on + strand, within CCNA_00769 at 825.561 kb on + strand, within CCNA_00769 at 825.569 kb on - strand, within CCNA_00769 at 825.574 kb on + strand, within CCNA_00769 at 825.647 kb on + strand at 825.681 kb on + strand at 825.710 kb on + strand at 825.718 kb on - strand at 825.738 kb on - strand at 825.739 kb on - strand at 825.783 kb on + strand at 825.791 kb on - strand, within CCNA_00770 at 825.807 kb on + strand, within CCNA_00770 at 825.815 kb on - strand, within CCNA_00770 at 825.826 kb on - strand, within CCNA_00770 at 825.830 kb on - strand, within CCNA_00770 at 825.834 kb on + strand, within CCNA_00770 at 825.896 kb on - strand, within CCNA_00770 at 825.904 kb on - strand, within CCNA_00770 at 825.939 kb on - strand, within CCNA_00770 at 825.983 kb on + strand, within CCNA_00770 at 826.032 kb on + strand, within CCNA_00770 at 826.033 kb on + strand, within CCNA_00770 at 826.050 kb on - strand, within CCNA_00770 at 826.073 kb on - strand, within CCNA_00770 at 826.122 kb on + strand, within CCNA_00770 at 826.130 kb on - strand, within CCNA_00770 at 826.130 kb on - strand, within CCNA_00770 at 826.144 kb on + strand, within CCNA_00770 at 826.144 kb on + strand, within CCNA_00770 at 826.161 kb on + strand, within CCNA_00770 at 826.179 kb on + strand, within CCNA_00770 at 826.179 kb on + strand, within CCNA_00770 at 826.179 kb on + strand, within CCNA_00770 at 826.206 kb on + strand, within CCNA_00770 at 826.326 kb on - strand at 826.340 kb on + strand at 826.358 kb on + strand at 826.358 kb on + strand at 826.519 kb on + strand at 826.519 kb on + strand at 826.524 kb on + strand at 826.531 kb on + strand at 826.539 kb on - strand at 826.539 kb on - strand at 826.539 kb on - strand at 826.539 kb on - strand at 826.541 kb on + strand at 826.543 kb on + strand at 826.549 kb on - strand at 826.642 kb on + strand at 826.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 824,028 + CCNA_00766 0.74 -0.7 824,028 + CCNA_00766 0.74 -1.9 824,030 + CCNA_00766 0.74 -0.7 824,098 + CCNA_00766 0.86 -1.7 824,103 + CCNA_00766 0.87 -2.6 824,106 - CCNA_00766 0.87 +0.0 824,111 - CCNA_00766 0.88 -1.2 824,215 + -0.4 824,229 + +0.4 824,237 - +0.4 824,244 - CCNA_00767 0.13 +0.0 824,254 - CCNA_00767 0.18 -0.7 824,309 + CCNA_00767 0.45 -1.5 824,309 + CCNA_00767 0.45 +0.1 824,317 - CCNA_00767 0.49 +1.4 824,317 - CCNA_00767 0.49 +0.4 824,318 - CCNA_00767 0.49 -0.6 824,343 + CCNA_00767 0.61 -0.2 824,353 - CCNA_00767 0.66 -0.2 824,385 - CCNA_00767 0.82 -0.3 824,402 + -0.3 824,412 + -0.1 824,412 + -0.8 824,420 - +0.8 824,420 - +0.3 824,420 - -1.6 824,420 - -0.8 824,420 - +0.0 824,420 - +0.1 824,420 - +0.8 824,420 - +0.3 824,420 - -0.4 824,420 - +0.7 824,420 - +0.7 824,420 - -1.4 824,420 - +1.1 824,424 + -0.2 824,432 - -0.7 824,441 + -1.7 824,461 - -0.9 824,599 - -0.1 824,808 + +0.7 824,808 + +0.6 824,808 + -1.8 824,816 - -0.6 824,863 - CCNA_00768 0.39 -1.2 824,888 - CCNA_00768 0.50 +1.3 824,909 - CCNA_00768 0.59 -0.1 824,925 - CCNA_00768 0.66 +0.9 824,940 - CCNA_00768 0.73 +0.2 825,019 - +0.9 825,065 + CCNA_00769 0.10 -0.5 825,074 + CCNA_00769 0.12 +0.3 825,127 + CCNA_00769 0.20 -0.6 825,127 + CCNA_00769 0.20 -0.2 825,135 - CCNA_00769 0.21 +0.1 825,169 - CCNA_00769 0.27 -0.3 825,218 + CCNA_00769 0.34 -0.8 825,253 + CCNA_00769 0.40 +0.9 825,314 - CCNA_00769 0.49 -0.1 825,327 + CCNA_00769 0.51 +0.4 825,327 + CCNA_00769 0.51 -0.3 825,381 + CCNA_00769 0.59 +1.8 825,436 + CCNA_00769 0.68 +1.1 825,444 - CCNA_00769 0.69 -0.2 825,454 - CCNA_00769 0.71 -0.5 825,456 + CCNA_00769 0.71 +2.2 825,456 + CCNA_00769 0.71 +0.5 825,459 - CCNA_00769 0.71 +1.4 825,464 - CCNA_00769 0.72 +0.8 825,485 + CCNA_00769 0.75 +0.4 825,561 + CCNA_00769 0.87 +1.1 825,569 - CCNA_00769 0.88 -0.7 825,574 + CCNA_00769 0.89 +0.8 825,647 + +0.6 825,681 + -0.7 825,710 + -0.3 825,718 - +1.6 825,738 - +0.3 825,739 - +0.7 825,783 + -0.5 825,791 - CCNA_00770 0.10 +0.6 825,807 + CCNA_00770 0.13 -0.4 825,815 - CCNA_00770 0.14 +2.0 825,826 - CCNA_00770 0.16 -0.3 825,830 - CCNA_00770 0.17 -0.4 825,834 + CCNA_00770 0.17 +0.6 825,896 - CCNA_00770 0.28 -2.3 825,904 - CCNA_00770 0.29 +1.4 825,939 - CCNA_00770 0.35 +0.6 825,983 + CCNA_00770 0.42 +0.2 826,032 + CCNA_00770 0.50 +0.1 826,033 + CCNA_00770 0.50 +1.5 826,050 - CCNA_00770 0.53 -1.4 826,073 - CCNA_00770 0.57 -0.4 826,122 + CCNA_00770 0.65 +0.4 826,130 - CCNA_00770 0.66 +0.4 826,130 - CCNA_00770 0.66 -0.9 826,144 + CCNA_00770 0.68 +0.7 826,144 + CCNA_00770 0.68 -1.3 826,161 + CCNA_00770 0.71 +0.6 826,179 + CCNA_00770 0.74 +0.5 826,179 + CCNA_00770 0.74 -0.6 826,179 + CCNA_00770 0.74 -0.2 826,206 + CCNA_00770 0.78 +0.3 826,326 - -0.6 826,340 + +0.7 826,358 + -0.2 826,358 + +0.5 826,519 + +0.4 826,519 + +1.0 826,524 + +1.7 826,531 + +0.0 826,539 - -0.4 826,539 - +0.3 826,539 - +0.0 826,539 - +0.9 826,541 + -0.2 826,543 + +0.4 826,549 - +0.4 826,642 + +1.1 826,642 + -0.8
Or see this region's nucleotide sequence