Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00760 and CCNA_00761 are separated by 144 nucleotides CCNA_00761 and CCNA_00762 overlap by 4 nucleotides CCNA_00762 and CCNA_00763 are separated by 4 nucleotides
CCNA_00760: CCNA_00760 - two component sensor histidine kinase, at 818,810 to 820,510
_00760
CCNA_00761: CCNA_00761 - hypothetical protein, at 820,655 to 820,864
_00761
CCNA_00762: CCNA_00762 - hypothetical protein, at 820,861 to 821,205
_00762
CCNA_00763: CCNA_00763 - electron transfer flavoprotein alpha subunit, at 821,210 to 822,151
_00763
Position (kb) 820
821 Strain fitness (log2 ratio) -2
-1
0
1 at 819.657 kb on - strand, within CCNA_00760 at 819.726 kb on + strand, within CCNA_00760 at 819.733 kb on - strand, within CCNA_00760 at 819.745 kb on - strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.747 kb on + strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.755 kb on - strand, within CCNA_00760 at 819.757 kb on + strand, within CCNA_00760 at 819.757 kb on + strand, within CCNA_00760 at 819.758 kb on + strand, within CCNA_00760 at 819.758 kb on + strand, within CCNA_00760 at 819.759 kb on + strand, within CCNA_00760 at 819.763 kb on + strand, within CCNA_00760 at 819.766 kb on - strand, within CCNA_00760 at 819.766 kb on - strand, within CCNA_00760 at 819.766 kb on - strand, within CCNA_00760 at 819.766 kb on - strand, within CCNA_00760 at 819.789 kb on + strand, within CCNA_00760 at 819.797 kb on - strand, within CCNA_00760 at 819.799 kb on + strand, within CCNA_00760 at 819.860 kb on + strand, within CCNA_00760 at 819.868 kb on - strand, within CCNA_00760 at 819.877 kb on + strand, within CCNA_00760 at 819.906 kb on + strand, within CCNA_00760 at 819.909 kb on - strand, within CCNA_00760 at 819.914 kb on - strand, within CCNA_00760 at 819.936 kb on + strand, within CCNA_00760 at 819.946 kb on + strand, within CCNA_00760 at 819.946 kb on + strand, within CCNA_00760 at 819.946 kb on + strand, within CCNA_00760 at 819.982 kb on - strand, within CCNA_00760 at 820.027 kb on + strand, within CCNA_00760 at 820.075 kb on - strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.119 kb on + strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.127 kb on - strand, within CCNA_00760 at 820.142 kb on - strand, within CCNA_00760 at 820.161 kb on - strand, within CCNA_00760 at 820.166 kb on + strand, within CCNA_00760 at 820.168 kb on - strand, within CCNA_00760 at 820.169 kb on - strand, within CCNA_00760 at 820.192 kb on + strand, within CCNA_00760 at 820.195 kb on - strand, within CCNA_00760 at 820.197 kb on + strand, within CCNA_00760 at 820.251 kb on - strand, within CCNA_00760 at 820.267 kb on + strand, within CCNA_00760 at 820.272 kb on + strand, within CCNA_00760 at 820.290 kb on - strand, within CCNA_00760 at 820.295 kb on - strand, within CCNA_00760 at 820.333 kb on - strand, within CCNA_00760 at 820.344 kb on + strand at 820.352 kb on - strand at 820.357 kb on - strand at 820.362 kb on + strand at 820.362 kb on + strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.370 kb on - strand at 820.375 kb on - strand at 820.398 kb on + strand at 820.398 kb on + strand at 820.398 kb on + strand at 820.398 kb on + strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.406 kb on - strand at 820.444 kb on + strand at 820.529 kb on - strand at 820.555 kb on - strand at 820.560 kb on + strand at 820.568 kb on - strand at 820.583 kb on - strand at 820.618 kb on + strand at 820.647 kb on + strand at 820.647 kb on + strand at 820.649 kb on - strand at 820.670 kb on - strand at 820.688 kb on - strand, within CCNA_00761 at 820.992 kb on + strand, within CCNA_00762 at 821.009 kb on - strand, within CCNA_00762 at 821.018 kb on - strand, within CCNA_00762 at 821.039 kb on - strand, within CCNA_00762 at 821.054 kb on + strand, within CCNA_00762 at 821.062 kb on - strand, within CCNA_00762 at 821.080 kb on + strand, within CCNA_00762 at 821.080 kb on + strand, within CCNA_00762 at 821.080 kb on + strand, within CCNA_00762 at 821.088 kb on - strand, within CCNA_00762 at 821.088 kb on - strand, within CCNA_00762 at 821.111 kb on + strand, within CCNA_00762 at 821.143 kb on - strand, within CCNA_00762
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 819,657 - CCNA_00760 0.50 +0.3 819,726 + CCNA_00760 0.54 -0.5 819,733 - CCNA_00760 0.54 +0.8 819,745 - CCNA_00760 0.55 +0.0 819,747 + CCNA_00760 0.55 -0.6 819,747 + CCNA_00760 0.55 +0.2 819,755 - CCNA_00760 0.56 +0.5 819,755 - CCNA_00760 0.56 -1.8 819,755 - CCNA_00760 0.56 +0.9 819,755 - CCNA_00760 0.56 -0.5 819,757 + CCNA_00760 0.56 +1.1 819,757 + CCNA_00760 0.56 +0.5 819,758 + CCNA_00760 0.56 +1.3 819,758 + CCNA_00760 0.56 -1.0 819,759 + CCNA_00760 0.56 -0.2 819,763 + CCNA_00760 0.56 -1.7 819,766 - CCNA_00760 0.56 +0.7 819,766 - CCNA_00760 0.56 +0.8 819,766 - CCNA_00760 0.56 +0.3 819,766 - CCNA_00760 0.56 +0.8 819,789 + CCNA_00760 0.58 +0.9 819,797 - CCNA_00760 0.58 -0.0 819,799 + CCNA_00760 0.58 -0.0 819,860 + CCNA_00760 0.62 -0.2 819,868 - CCNA_00760 0.62 -0.5 819,877 + CCNA_00760 0.63 -1.6 819,906 + CCNA_00760 0.64 +0.6 819,909 - CCNA_00760 0.65 -1.7 819,914 - CCNA_00760 0.65 -0.5 819,936 + CCNA_00760 0.66 -2.0 819,946 + CCNA_00760 0.67 +1.3 819,946 + CCNA_00760 0.67 -0.3 819,946 + CCNA_00760 0.67 -0.1 819,982 - CCNA_00760 0.69 -0.2 820,027 + CCNA_00760 0.72 +0.2 820,075 - CCNA_00760 0.74 -0.0 820,119 + CCNA_00760 0.77 -0.9 820,119 + CCNA_00760 0.77 -0.2 820,119 + CCNA_00760 0.77 -0.3 820,119 + CCNA_00760 0.77 +0.1 820,127 - CCNA_00760 0.77 +0.0 820,127 - CCNA_00760 0.77 -0.8 820,127 - CCNA_00760 0.77 -0.2 820,127 - CCNA_00760 0.77 -0.2 820,142 - CCNA_00760 0.78 +0.4 820,161 - CCNA_00760 0.79 +0.1 820,166 + CCNA_00760 0.80 -0.8 820,168 - CCNA_00760 0.80 +0.1 820,169 - CCNA_00760 0.80 +0.4 820,192 + CCNA_00760 0.81 -1.2 820,195 - CCNA_00760 0.81 -0.6 820,197 + CCNA_00760 0.82 -1.8 820,251 - CCNA_00760 0.85 +0.1 820,267 + CCNA_00760 0.86 +0.5 820,272 + CCNA_00760 0.86 -0.3 820,290 - CCNA_00760 0.87 -1.6 820,295 - CCNA_00760 0.87 -0.3 820,333 - CCNA_00760 0.90 +0.2 820,344 + -0.4 820,352 - +1.4 820,357 - +0.2 820,362 + -2.5 820,362 + -0.3 820,370 - +1.5 820,370 - +0.1 820,370 - +0.5 820,370 - -0.0 820,370 - +0.9 820,375 - +0.2 820,398 + -1.8 820,398 + -0.5 820,398 + -0.2 820,398 + +0.9 820,406 - +0.1 820,406 - -0.1 820,406 - +1.5 820,406 - +1.1 820,406 - +0.1 820,406 - -0.9 820,406 - +0.1 820,406 - -0.5 820,444 + -0.9 820,529 - +1.1 820,555 - +0.7 820,560 + -1.7 820,568 - +0.4 820,583 - +1.5 820,618 + -0.0 820,647 + -0.8 820,647 + -0.5 820,649 - +0.6 820,670 - +0.1 820,688 - CCNA_00761 0.16 +0.4 820,992 + CCNA_00762 0.38 -0.3 821,009 - CCNA_00762 0.43 -0.1 821,018 - CCNA_00762 0.46 -0.1 821,039 - CCNA_00762 0.52 +0.1 821,054 + CCNA_00762 0.56 +0.6 821,062 - CCNA_00762 0.58 +0.6 821,080 + CCNA_00762 0.63 -1.0 821,080 + CCNA_00762 0.63 +0.1 821,080 + CCNA_00762 0.63 -0.5 821,088 - CCNA_00762 0.66 +0.5 821,088 - CCNA_00762 0.66 +0.1 821,111 + CCNA_00762 0.72 -0.2 821,143 - CCNA_00762 0.82 +0.8
Or see this region's nucleotide sequence