Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00751

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00750 and CCNA_00751 are separated by 370 nucleotidesCCNA_00751 and CCNA_00752 are separated by 150 nucleotides CCNA_00750: CCNA_00750 - FeaR-family transcriptional regulator, at 807,593 to 808,621 _00750 CCNA_00751: CCNA_00751 - hypothetical protein, at 808,992 to 810,233 _00751 CCNA_00752: CCNA_00752 - 3-hydroxybutyryl-CoA dehydrogenase, at 810,384 to 811,262 _00752 Position (kb) 808 809 810 811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 807.997 kb on + strand, within CCNA_00750at 808.049 kb on - strand, within CCNA_00750at 808.049 kb on - strand, within CCNA_00750at 808.086 kb on + strand, within CCNA_00750at 808.107 kb on - strand, within CCNA_00750at 808.107 kb on - strand, within CCNA_00750at 808.109 kb on + strand, within CCNA_00750at 808.117 kb on - strand, within CCNA_00750at 808.117 kb on - strand, within CCNA_00750at 808.167 kb on - strand, within CCNA_00750at 808.230 kb on - strand, within CCNA_00750at 808.292 kb on + strand, within CCNA_00750at 808.347 kb on + strand, within CCNA_00750at 808.356 kb on + strand, within CCNA_00750at 808.397 kb on + strand, within CCNA_00750at 808.442 kb on - strand, within CCNA_00750at 808.442 kb on - strand, within CCNA_00750at 808.450 kb on + strand, within CCNA_00750at 808.450 kb on + strand, within CCNA_00750at 808.453 kb on - strand, within CCNA_00750at 808.468 kb on - strand, within CCNA_00750at 808.528 kb on + strandat 808.568 kb on - strandat 808.616 kb on - strandat 808.624 kb on - strandat 808.624 kb on - strandat 808.624 kb on - strandat 808.632 kb on - strandat 808.695 kb on + strandat 808.713 kb on - strandat 808.713 kb on - strandat 808.715 kb on + strandat 808.723 kb on - strandat 808.776 kb on + strandat 808.804 kb on + strandat 808.836 kb on + strandat 808.872 kb on + strandat 808.880 kb on - strandat 808.928 kb on + strandat 808.943 kb on + strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.943 kb on - strandat 808.949 kb on - strandat 808.950 kb on + strandat 809.045 kb on + strandat 809.045 kb on - strandat 809.091 kb on - strandat 809.121 kb on + strand, within CCNA_00751at 809.127 kb on - strand, within CCNA_00751at 809.129 kb on + strand, within CCNA_00751at 809.137 kb on - strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.156 kb on + strand, within CCNA_00751at 809.157 kb on + strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.164 kb on - strand, within CCNA_00751at 809.173 kb on + strand, within CCNA_00751at 809.173 kb on + strand, within CCNA_00751at 809.258 kb on - strand, within CCNA_00751at 809.258 kb on - strand, within CCNA_00751at 809.308 kb on - strand, within CCNA_00751at 809.334 kb on + strand, within CCNA_00751at 809.342 kb on - strand, within CCNA_00751at 809.356 kb on + strand, within CCNA_00751at 809.356 kb on + strand, within CCNA_00751at 809.362 kb on + strand, within CCNA_00751at 809.390 kb on + strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.413 kb on + strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.421 kb on - strand, within CCNA_00751at 809.426 kb on - strand, within CCNA_00751at 809.431 kb on - strand, within CCNA_00751at 809.441 kb on - strand, within CCNA_00751at 809.441 kb on - strand, within CCNA_00751at 809.455 kb on - strand, within CCNA_00751at 809.463 kb on + strand, within CCNA_00751at 809.466 kb on - strand, within CCNA_00751at 809.471 kb on - strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.491 kb on + strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.499 kb on - strand, within CCNA_00751at 809.501 kb on + strand, within CCNA_00751at 809.504 kb on - strand, within CCNA_00751at 809.554 kb on + strand, within CCNA_00751at 809.562 kb on + strand, within CCNA_00751at 809.562 kb on - strand, within CCNA_00751at 809.612 kb on - strand, within CCNA_00751at 809.713 kb on + strand, within CCNA_00751at 809.733 kb on + strand, within CCNA_00751at 809.738 kb on + strand, within CCNA_00751at 809.741 kb on - strand, within CCNA_00751at 809.751 kb on + strand, within CCNA_00751at 809.770 kb on + strand, within CCNA_00751at 809.810 kb on - strand, within CCNA_00751at 809.829 kb on + strand, within CCNA_00751at 809.838 kb on - strand, within CCNA_00751at 809.859 kb on + strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.867 kb on - strand, within CCNA_00751at 809.869 kb on - strand, within CCNA_00751at 809.877 kb on - strand, within CCNA_00751at 809.993 kb on - strand, within CCNA_00751at 810.008 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.015 kb on + strand, within CCNA_00751at 810.026 kb on - strand, within CCNA_00751at 810.031 kb on - strand, within CCNA_00751at 810.056 kb on + strand, within CCNA_00751at 810.079 kb on - strand, within CCNA_00751at 810.091 kb on + strand, within CCNA_00751at 810.115 kb on + strandat 810.123 kb on - strandat 810.140 kb on + strandat 810.215 kb on + strandat 810.244 kb on + strandat 810.251 kb on - strandat 810.254 kb on + strandat 810.285 kb on - strandat 810.338 kb on - strandat 810.339 kb on - strandat 810.427 kb on - strandat 810.511 kb on + strand, within CCNA_00752at 810.532 kb on + strand, within CCNA_00752at 810.534 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.569 kb on + strand, within CCNA_00752at 810.569 kb on + strand, within CCNA_00752at 810.569 kb on + strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.621 kb on + strand, within CCNA_00752at 810.648 kb on - strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.660 kb on - strand, within CCNA_00752at 810.660 kb on - strand, within CCNA_00752at 810.660 kb on - strand, within CCNA_00752at 810.832 kb on - strand, within CCNA_00752at 810.840 kb on + strand, within CCNA_00752at 810.848 kb on - strand, within CCNA_00752at 810.896 kb on + strand, within CCNA_00752at 810.939 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 811.025 kb on + strand, within CCNA_00752at 811.053 kb on + strand, within CCNA_00752at 811.170 kb on - strand, within CCNA_00752at 811.175 kb on + strandat 811.175 kb on + strandat 811.177 kb on - strandat 811.183 kb on - strandat 811.217 kb on - strandat 811.218 kb on + strandat 811.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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807,997 + CCNA_00750 0.39 +0.1
808,049 - CCNA_00750 0.44 -0.3
808,049 - CCNA_00750 0.44 +0.4
808,086 + CCNA_00750 0.48 +0.2
808,107 - CCNA_00750 0.50 +1.0
808,107 - CCNA_00750 0.50 +0.4
808,109 + CCNA_00750 0.50 +0.7
808,117 - CCNA_00750 0.51 +0.4
808,117 - CCNA_00750 0.51 +0.2
808,167 - CCNA_00750 0.56 -0.6
808,230 - CCNA_00750 0.62 +0.1
808,292 + CCNA_00750 0.68 +0.1
808,347 + CCNA_00750 0.73 +0.1
808,356 + CCNA_00750 0.74 +0.3
808,397 + CCNA_00750 0.78 +0.2
808,442 - CCNA_00750 0.83 -1.0
808,442 - CCNA_00750 0.83 -0.7
808,450 + CCNA_00750 0.83 +0.2
808,450 + CCNA_00750 0.83 +1.8
808,453 - CCNA_00750 0.84 +0.4
808,468 - CCNA_00750 0.85 +0.1
808,528 + +0.2
808,568 - +0.3
808,616 - -0.1
808,624 - +0.3
808,624 - +0.2
808,624 - +0.9
808,632 - +0.2
808,695 + +0.4
808,713 - +1.5
808,713 - -0.3
808,715 + +0.1
808,723 - -0.7
808,776 + +0.3
808,804 + +0.3
808,836 + -0.2
808,872 + +1.3
808,880 - -0.3
808,928 + -0.9
808,943 + +1.2
808,943 - +0.2
808,943 - +0.3
808,943 - +0.4
808,943 - -0.5
808,949 - +0.7
808,950 + -0.4
809,045 + +0.2
809,045 - +0.9
809,091 - -0.1
809,121 + CCNA_00751 0.10 +0.8
809,127 - CCNA_00751 0.11 -0.3
809,129 + CCNA_00751 0.11 -1.3
809,137 - CCNA_00751 0.12 +0.3
809,156 + CCNA_00751 0.13 +0.1
809,156 + CCNA_00751 0.13 -0.2
809,156 + CCNA_00751 0.13 -0.2
809,156 + CCNA_00751 0.13 -0.6
809,156 + CCNA_00751 0.13 -0.1
809,157 + CCNA_00751 0.13 -1.7
809,164 - CCNA_00751 0.14 +0.1
809,164 - CCNA_00751 0.14 -0.2
809,164 - CCNA_00751 0.14 +0.2
809,164 - CCNA_00751 0.14 +0.4
809,173 + CCNA_00751 0.15 -0.5
809,173 + CCNA_00751 0.15 -0.2
809,258 - CCNA_00751 0.21 +0.1
809,258 - CCNA_00751 0.21 +0.2
809,308 - CCNA_00751 0.25 +0.2
809,334 + CCNA_00751 0.28 +0.7
809,342 - CCNA_00751 0.28 +0.4
809,356 + CCNA_00751 0.29 -0.8
809,356 + CCNA_00751 0.29 +0.8
809,362 + CCNA_00751 0.30 +0.3
809,390 + CCNA_00751 0.32 +0.5
809,413 + CCNA_00751 0.34 +0.2
809,413 + CCNA_00751 0.34 +0.5
809,413 + CCNA_00751 0.34 +0.6
809,421 - CCNA_00751 0.35 +1.4
809,421 - CCNA_00751 0.35 -0.3
809,421 - CCNA_00751 0.35 +0.4
809,426 - CCNA_00751 0.35 -0.4
809,431 - CCNA_00751 0.35 +0.6
809,441 - CCNA_00751 0.36 -0.3
809,441 - CCNA_00751 0.36 -0.3
809,455 - CCNA_00751 0.37 +0.4
809,463 + CCNA_00751 0.38 +0.9
809,466 - CCNA_00751 0.38 +0.4
809,471 - CCNA_00751 0.39 -0.3
809,491 + CCNA_00751 0.40 +0.9
809,491 + CCNA_00751 0.40 +0.9
809,499 - CCNA_00751 0.41 -0.2
809,499 - CCNA_00751 0.41 -0.4
809,499 - CCNA_00751 0.41 +1.0
809,499 - CCNA_00751 0.41 +0.4
809,499 - CCNA_00751 0.41 +0.9
809,501 + CCNA_00751 0.41 +0.2
809,504 - CCNA_00751 0.41 +0.4
809,554 + CCNA_00751 0.45 +0.2
809,562 + CCNA_00751 0.46 +1.9
809,562 - CCNA_00751 0.46 -0.2
809,612 - CCNA_00751 0.50 -0.6
809,713 + CCNA_00751 0.58 -0.5
809,733 + CCNA_00751 0.60 +0.0
809,738 + CCNA_00751 0.60 +1.5
809,741 - CCNA_00751 0.60 +0.3
809,751 + CCNA_00751 0.61 +0.1
809,770 + CCNA_00751 0.63 +0.3
809,810 - CCNA_00751 0.66 +0.6
809,829 + CCNA_00751 0.67 +3.3
809,838 - CCNA_00751 0.68 +0.4
809,859 + CCNA_00751 0.70 -0.1
809,867 - CCNA_00751 0.70 +0.7
809,867 - CCNA_00751 0.70 -0.1
809,869 - CCNA_00751 0.71 +0.9
809,877 - CCNA_00751 0.71 +0.4
809,993 - CCNA_00751 0.81 +0.0
810,008 + CCNA_00751 0.82 +0.4
810,015 + CCNA_00751 0.82 -0.1
810,015 + CCNA_00751 0.82 -1.1
810,015 + CCNA_00751 0.82 -0.1
810,026 - CCNA_00751 0.83 -0.2
810,031 - CCNA_00751 0.84 -1.3
810,056 + CCNA_00751 0.86 +0.2
810,079 - CCNA_00751 0.88 +0.3
810,091 + CCNA_00751 0.88 +0.6
810,115 + +1.9
810,123 - +0.2
810,140 + -1.3
810,215 + -0.3
810,244 + +1.4
810,251 - -0.0
810,254 + -0.6
810,285 - +0.5
810,338 - -0.2
810,339 - +1.0
810,427 - -0.2
810,511 + CCNA_00752 0.14 -0.2
810,532 + CCNA_00752 0.17 -0.7
810,534 + CCNA_00752 0.17 -0.8
810,546 + CCNA_00752 0.18 -3.4
810,546 + CCNA_00752 0.18 +1.6
810,546 + CCNA_00752 0.18 -0.5
810,554 - CCNA_00752 0.19 -0.6
810,554 - CCNA_00752 0.19 -0.7
810,554 - CCNA_00752 0.19 +0.9
810,554 - CCNA_00752 0.19 +0.2
810,569 + CCNA_00752 0.21 +0.6
810,569 + CCNA_00752 0.21 -0.8
810,569 + CCNA_00752 0.21 -1.0
810,577 - CCNA_00752 0.22 -0.7
810,621 + CCNA_00752 0.27 +0.5
810,648 - CCNA_00752 0.30 -0.9
810,652 + CCNA_00752 0.30 +0.1
810,660 - CCNA_00752 0.31 +0.4
810,660 - CCNA_00752 0.31 +0.0
810,660 - CCNA_00752 0.31 -0.5
810,832 - CCNA_00752 0.51 +0.6
810,840 + CCNA_00752 0.52 +0.7
810,848 - CCNA_00752 0.53 +0.5
810,896 + CCNA_00752 0.58 -0.8
810,939 - CCNA_00752 0.63 -0.1
810,952 - CCNA_00752 0.65 +0.0
811,025 + CCNA_00752 0.73 +0.5
811,053 + CCNA_00752 0.76 -0.5
811,170 - CCNA_00752 0.89 +0.5
811,175 + +0.0
811,175 + -0.6
811,177 - +0.2
811,183 - +1.6
811,217 - -0.2
811,218 + -0.6
811,228 + -0.0

Or see this region's nucleotide sequence