Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00740 and CCNA_00741 overlap by 1 nucleotides CCNA_00741 and CCNA_00742 are separated by 57 nucleotides CCNA_00742 and CCNA_00743 are separated by 146 nucleotides CCNA_00743 and CCNA_00744 are separated by 241 nucleotides
CCNA_00740: CCNA_00740 - riboflavin kinase/FMN adenylyltransferase, at 798,513 to 799,454
_00740
CCNA_00741: CCNA_00741 - 3-hydroxybutyryl-CoA dehydratase, at 799,454 to 799,879
_00741
CCNA_00742: CCNA_00742 - HAD superfamily sugar phosphatase, at 799,937 to 800,797
_00742
CCNA_00743: CCNA_00743 - NnrU family membrane protein, at 800,944 to 801,510
_00743
CCNA_00744: CCNA_00744 - GIY-YIG endonuclease domain protein, at 801,752 to 802,036
_00744
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.441 kb on + strand at 799.441 kb on + strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.449 kb on - strand at 799.486 kb on - strand at 799.486 kb on - strand at 799.493 kb on - strand at 799.497 kb on + strand, within CCNA_00741 at 799.499 kb on - strand, within CCNA_00741 at 799.552 kb on - strand, within CCNA_00741 at 799.606 kb on - strand, within CCNA_00741 at 799.607 kb on - strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.626 kb on + strand, within CCNA_00741 at 799.634 kb on + strand, within CCNA_00741 at 799.634 kb on - strand, within CCNA_00741 at 799.653 kb on - strand, within CCNA_00741 at 799.655 kb on + strand, within CCNA_00741 at 799.655 kb on + strand, within CCNA_00741 at 799.662 kb on + strand, within CCNA_00741 at 799.663 kb on - strand, within CCNA_00741 at 799.670 kb on - strand, within CCNA_00741 at 799.691 kb on + strand, within CCNA_00741 at 799.698 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.720 kb on + strand, within CCNA_00741 at 799.728 kb on - strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.730 kb on + strand, within CCNA_00741 at 799.738 kb on - strand, within CCNA_00741 at 799.764 kb on + strand, within CCNA_00741 at 799.783 kb on + strand, within CCNA_00741 at 799.791 kb on - strand, within CCNA_00741 at 799.818 kb on + strand, within CCNA_00741 at 799.846 kb on + strand at 799.865 kb on + strand at 799.881 kb on - strand at 799.891 kb on - strand at 799.893 kb on + strand at 799.909 kb on + strand at 799.914 kb on + strand at 799.914 kb on + strand at 799.916 kb on + strand at 799.917 kb on - strand at 799.917 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.922 kb on - strand at 799.924 kb on - strand at 799.924 kb on - strand at 799.924 kb on - strand at 799.946 kb on - strand at 799.946 kb on - strand at 799.951 kb on - strand at 799.975 kb on + strand at 799.983 kb on + strand at 799.991 kb on - strand at 799.993 kb on - strand at 800.006 kb on + strand at 800.063 kb on - strand, within CCNA_00742 at 800.075 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.097 kb on + strand, within CCNA_00742 at 800.105 kb on - strand, within CCNA_00742 at 800.105 kb on - strand, within CCNA_00742 at 800.105 kb on - strand, within CCNA_00742 at 800.138 kb on - strand, within CCNA_00742 at 800.183 kb on - strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.193 kb on + strand, within CCNA_00742 at 800.203 kb on + strand, within CCNA_00742 at 800.211 kb on - strand, within CCNA_00742 at 800.242 kb on + strand, within CCNA_00742 at 800.242 kb on + strand, within CCNA_00742 at 800.248 kb on + strand, within CCNA_00742 at 800.261 kb on - strand, within CCNA_00742 at 800.316 kb on - strand, within CCNA_00742 at 800.317 kb on - strand, within CCNA_00742 at 800.327 kb on - strand, within CCNA_00742 at 800.352 kb on + strand, within CCNA_00742 at 800.361 kb on - strand, within CCNA_00742 at 800.392 kb on + strand, within CCNA_00742 at 800.396 kb on - strand, within CCNA_00742 at 800.402 kb on - strand, within CCNA_00742 at 800.468 kb on - strand, within CCNA_00742 at 800.478 kb on - strand, within CCNA_00742 at 800.478 kb on - strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.528 kb on - strand, within CCNA_00742 at 800.559 kb on - strand, within CCNA_00742 at 800.594 kb on + strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.600 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.668 kb on - strand, within CCNA_00742 at 800.670 kb on + strand, within CCNA_00742 at 800.735 kb on - strand at 800.735 kb on - strand at 800.738 kb on + strand at 800.749 kb on + strand at 800.775 kb on - strand at 800.783 kb on + strand at 800.813 kb on + strand at 800.813 kb on + strand at 800.850 kb on + strand at 800.850 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.855 kb on + strand at 800.856 kb on - strand at 800.863 kb on - strand at 800.968 kb on + strand at 800.971 kb on - strand at 800.971 kb on - strand at 800.973 kb on + strand at 800.976 kb on - strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.981 kb on - strand at 800.981 kb on - strand at 801.000 kb on - strand at 801.039 kb on + strand, within CCNA_00743 at 801.083 kb on + strand, within CCNA_00743 at 801.083 kb on + strand, within CCNA_00743 at 801.091 kb on - strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.135 kb on + strand, within CCNA_00743 at 801.138 kb on - strand, within CCNA_00743 at 801.180 kb on + strand, within CCNA_00743 at 801.180 kb on + strand, within CCNA_00743 at 801.190 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.199 kb on + strand, within CCNA_00743 at 801.207 kb on - strand, within CCNA_00743 at 801.231 kb on + strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.239 kb on - strand, within CCNA_00743 at 801.251 kb on + strand, within CCNA_00743 at 801.264 kb on - strand, within CCNA_00743 at 801.274 kb on - strand, within CCNA_00743 at 801.297 kb on + strand, within CCNA_00743 at 801.305 kb on - strand, within CCNA_00743 at 801.312 kb on + strand, within CCNA_00743 at 801.320 kb on - strand, within CCNA_00743 at 801.320 kb on - strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.337 kb on + strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.345 kb on - strand, within CCNA_00743 at 801.355 kb on - strand, within CCNA_00743 at 801.360 kb on - strand, within CCNA_00743 at 801.400 kb on - strand, within CCNA_00743 at 801.400 kb on - strand, within CCNA_00743 at 801.413 kb on + strand, within CCNA_00743 at 801.425 kb on + strand, within CCNA_00743 at 801.430 kb on + strand, within CCNA_00743 at 801.437 kb on + strand, within CCNA_00743 at 801.451 kb on + strand, within CCNA_00743 at 801.491 kb on + strand at 801.504 kb on + strand at 801.505 kb on + strand at 801.505 kb on + strand at 801.506 kb on + strand at 801.506 kb on + strand at 801.507 kb on - strand at 801.552 kb on - strand at 801.555 kb on + strand at 801.558 kb on - strand at 801.564 kb on - strand at 801.564 kb on - strand at 801.572 kb on - strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.596 kb on + strand at 801.604 kb on - strand at 801.604 kb on - strand at 801.620 kb on + strand at 801.649 kb on - strand at 801.764 kb on - strand at 801.797 kb on + strand, within CCNA_00744
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 799,441 + -1.4 799,441 + -0.1 799,449 - -0.9 799,449 - +0.5 799,449 - +0.9 799,449 - -0.5 799,449 - +1.1 799,449 - -0.3 799,486 - +0.7 799,486 - +0.0 799,493 - +0.0 799,497 + CCNA_00741 0.10 +0.5 799,499 - CCNA_00741 0.11 +1.0 799,552 - CCNA_00741 0.23 +0.1 799,606 - CCNA_00741 0.36 -0.1 799,607 - CCNA_00741 0.36 +1.0 799,626 + CCNA_00741 0.40 -0.9 799,626 + CCNA_00741 0.40 -0.8 799,626 + CCNA_00741 0.40 +0.0 799,626 + CCNA_00741 0.40 +0.4 799,626 + CCNA_00741 0.40 +0.9 799,634 + CCNA_00741 0.42 +0.3 799,634 - CCNA_00741 0.42 -0.5 799,653 - CCNA_00741 0.47 -0.8 799,655 + CCNA_00741 0.47 -1.9 799,655 + CCNA_00741 0.47 -1.2 799,662 + CCNA_00741 0.49 -0.5 799,663 - CCNA_00741 0.49 -0.8 799,670 - CCNA_00741 0.51 +0.5 799,691 + CCNA_00741 0.56 +1.1 799,698 + CCNA_00741 0.57 +0.0 799,720 + CCNA_00741 0.62 +0.4 799,720 + CCNA_00741 0.62 -1.2 799,720 + CCNA_00741 0.62 -1.3 799,728 - CCNA_00741 0.64 +1.0 799,730 + CCNA_00741 0.65 +0.6 799,730 + CCNA_00741 0.65 +1.5 799,738 - CCNA_00741 0.67 +0.3 799,764 + CCNA_00741 0.73 -1.2 799,783 + CCNA_00741 0.77 +0.8 799,791 - CCNA_00741 0.79 -0.1 799,818 + CCNA_00741 0.85 +0.5 799,846 + -0.4 799,865 + -0.3 799,881 - +0.9 799,891 - +3.1 799,893 + +1.4 799,909 + -1.8 799,914 + +0.2 799,914 + +0.5 799,916 + +0.7 799,917 - +1.1 799,917 - +0.5 799,922 - +1.3 799,922 - -0.1 799,922 - -0.4 799,922 - +0.1 799,922 - +0.9 799,924 - +0.9 799,924 - +1.2 799,924 - +0.3 799,946 - -1.3 799,946 - +0.1 799,951 - +1.2 799,975 + -1.6 799,983 + -0.3 799,991 - +0.5 799,993 - -0.2 800,006 + +0.5 800,063 - CCNA_00742 0.15 -0.6 800,075 + CCNA_00742 0.16 +1.4 800,097 + CCNA_00742 0.19 -0.6 800,097 + CCNA_00742 0.19 +2.1 800,097 + CCNA_00742 0.19 -0.8 800,105 - CCNA_00742 0.20 +0.4 800,105 - CCNA_00742 0.20 +0.5 800,105 - CCNA_00742 0.20 +0.0 800,138 - CCNA_00742 0.23 +0.7 800,183 - CCNA_00742 0.29 -0.5 800,193 + CCNA_00742 0.30 -0.4 800,193 + CCNA_00742 0.30 +0.9 800,203 + CCNA_00742 0.31 +0.9 800,211 - CCNA_00742 0.32 -0.5 800,242 + CCNA_00742 0.35 +0.9 800,242 + CCNA_00742 0.35 -1.1 800,248 + CCNA_00742 0.36 +1.4 800,261 - CCNA_00742 0.38 +1.1 800,316 - CCNA_00742 0.44 +1.0 800,317 - CCNA_00742 0.44 +1.4 800,327 - CCNA_00742 0.45 +1.4 800,352 + CCNA_00742 0.48 -0.5 800,361 - CCNA_00742 0.49 +1.1 800,392 + CCNA_00742 0.53 +0.9 800,396 - CCNA_00742 0.53 +1.1 800,402 - CCNA_00742 0.54 +0.7 800,468 - CCNA_00742 0.62 -0.8 800,478 - CCNA_00742 0.63 +1.0 800,478 - CCNA_00742 0.63 -0.1 800,528 - CCNA_00742 0.69 -0.1 800,528 - CCNA_00742 0.69 +0.2 800,528 - CCNA_00742 0.69 +0.1 800,528 - CCNA_00742 0.69 -0.1 800,528 - CCNA_00742 0.69 +1.2 800,559 - CCNA_00742 0.72 +0.1 800,594 + CCNA_00742 0.76 -0.3 800,600 - CCNA_00742 0.77 +0.2 800,600 - CCNA_00742 0.77 +1.3 800,668 - CCNA_00742 0.85 +0.8 800,668 - CCNA_00742 0.85 +0.5 800,670 + CCNA_00742 0.85 -0.2 800,735 - +0.2 800,735 - +0.5 800,738 + -0.2 800,749 + +0.2 800,775 - +1.2 800,783 + +0.0 800,813 + -1.0 800,813 + -1.5 800,850 + +0.0 800,850 + +0.1 800,855 + -1.0 800,855 + -0.1 800,855 + +1.4 800,856 - +1.3 800,863 - +1.1 800,968 + +0.3 800,971 - -0.0 800,971 - -1.8 800,973 + -0.1 800,976 - -1.8 800,981 - -0.2 800,981 - -0.9 800,981 - -1.4 800,981 - -0.6 801,000 - -0.4 801,039 + CCNA_00743 0.17 +0.6 801,083 + CCNA_00743 0.25 -0.4 801,083 + CCNA_00743 0.25 +0.1 801,091 - CCNA_00743 0.26 +0.6 801,135 + CCNA_00743 0.34 -0.6 801,135 + CCNA_00743 0.34 -0.8 801,138 - CCNA_00743 0.34 -0.6 801,180 + CCNA_00743 0.42 +0.7 801,180 + CCNA_00743 0.42 +0.4 801,190 + CCNA_00743 0.43 +0.6 801,199 + CCNA_00743 0.45 +0.5 801,199 + CCNA_00743 0.45 +0.3 801,207 - CCNA_00743 0.46 -0.1 801,231 + CCNA_00743 0.51 +0.3 801,239 - CCNA_00743 0.52 -3.3 801,239 - CCNA_00743 0.52 +1.1 801,251 + CCNA_00743 0.54 +0.2 801,264 - CCNA_00743 0.56 -0.7 801,274 - CCNA_00743 0.58 -3.2 801,297 + CCNA_00743 0.62 +0.2 801,305 - CCNA_00743 0.64 -0.5 801,312 + CCNA_00743 0.65 -0.9 801,320 - CCNA_00743 0.66 -0.9 801,320 - CCNA_00743 0.66 -0.0 801,337 + CCNA_00743 0.69 -0.5 801,337 + CCNA_00743 0.69 +0.1 801,337 + CCNA_00743 0.69 +0.0 801,337 + CCNA_00743 0.69 -0.0 801,337 + CCNA_00743 0.69 +0.4 801,337 + CCNA_00743 0.69 +1.2 801,337 + CCNA_00743 0.69 -0.0 801,345 - CCNA_00743 0.71 -1.2 801,345 - CCNA_00743 0.71 +0.1 801,345 - CCNA_00743 0.71 +1.1 801,345 - CCNA_00743 0.71 -0.7 801,355 - CCNA_00743 0.72 +0.9 801,360 - CCNA_00743 0.73 +0.1 801,400 - CCNA_00743 0.80 +0.2 801,400 - CCNA_00743 0.80 +0.1 801,413 + CCNA_00743 0.83 -0.5 801,425 + CCNA_00743 0.85 -0.3 801,430 + CCNA_00743 0.86 +0.2 801,437 + CCNA_00743 0.87 +1.1 801,451 + CCNA_00743 0.89 -0.6 801,491 + -0.3 801,504 + +0.4 801,505 + -0.7 801,505 + +1.3 801,506 + -0.1 801,506 + -0.7 801,507 - +0.3 801,552 - +0.3 801,555 + -0.5 801,558 - -0.7 801,564 - -1.1 801,564 - -1.9 801,572 - -1.2 801,596 + +0.0 801,596 + -0.7 801,596 + -0.1 801,604 - -1.2 801,604 - -0.3 801,620 + -0.8 801,649 - -0.6 801,764 - +0.4 801,797 + CCNA_00744 0.16 -0.5
Or see this region's nucleotide sequence