Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00683 and CCNA_00684 are separated by 12 nucleotides CCNA_00684 and CCNA_00685 overlap by 4 nucleotides CCNA_00685 and CCNA_00686 are separated by 171 nucleotides
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
CCNA_00684: CCNA_00684 - anti-sigma factor, ChrR-family, at 740,473 to 741,111
_00684
CCNA_00685: CCNA_00685 - RNA polymerase sigma factor, at 741,108 to 741,725
_00685
CCNA_00686: CCNA_00686 - peptidase family S41 protein, at 741,897 to 743,330
_00686
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 739.475 kb on + strand, within CCNA_00683 at 739.480 kb on + strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.485 kb on + strand, within CCNA_00683 at 739.508 kb on - strand, within CCNA_00683 at 739.566 kb on - strand, within CCNA_00683 at 739.578 kb on - strand, within CCNA_00683 at 739.609 kb on - strand, within CCNA_00683 at 739.645 kb on + strand, within CCNA_00683 at 739.645 kb on + strand, within CCNA_00683 at 739.653 kb on - strand, within CCNA_00683 at 739.653 kb on - strand, within CCNA_00683 at 739.658 kb on - strand, within CCNA_00683 at 739.659 kb on + strand, within CCNA_00683 at 739.688 kb on + strand, within CCNA_00683 at 739.720 kb on + strand, within CCNA_00683 at 739.775 kb on - strand, within CCNA_00683 at 739.792 kb on + strand, within CCNA_00683 at 739.801 kb on - strand, within CCNA_00683 at 739.845 kb on - strand, within CCNA_00683 at 739.846 kb on + strand, within CCNA_00683 at 739.904 kb on - strand, within CCNA_00683 at 739.908 kb on + strand, within CCNA_00683 at 739.926 kb on - strand, within CCNA_00683 at 739.974 kb on + strand, within CCNA_00683 at 739.979 kb on + strand, within CCNA_00683 at 739.987 kb on - strand, within CCNA_00683 at 740.039 kb on - strand, within CCNA_00683 at 740.099 kb on - strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.106 kb on + strand, within CCNA_00683 at 740.111 kb on + strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.120 kb on - strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.187 kb on - strand, within CCNA_00683 at 740.202 kb on - strand, within CCNA_00683 at 740.222 kb on - strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.257 kb on + strand, within CCNA_00683 at 740.261 kb on - strand, within CCNA_00683 at 740.261 kb on - strand, within CCNA_00683 at 740.282 kb on - strand, within CCNA_00683 at 740.308 kb on - strand at 740.351 kb on + strand at 740.364 kb on - strand at 740.378 kb on - strand at 740.388 kb on + strand at 740.391 kb on - strand at 740.393 kb on + strand at 740.396 kb on - strand at 740.424 kb on + strand at 740.424 kb on + strand at 740.430 kb on - strand at 740.436 kb on + strand at 740.444 kb on - strand at 740.460 kb on + strand at 740.460 kb on + strand at 740.461 kb on + strand at 740.461 kb on + strand at 740.468 kb on - strand at 740.469 kb on - strand at 740.469 kb on - strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.472 kb on + strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.492 kb on + strand at 740.492 kb on + strand at 740.523 kb on + strand at 740.541 kb on - strand, within CCNA_00684 at 740.557 kb on - strand, within CCNA_00684 at 740.643 kb on - strand, within CCNA_00684 at 740.707 kb on - strand, within CCNA_00684 at 740.795 kb on - strand, within CCNA_00684 at 740.795 kb on - strand, within CCNA_00684 at 741.134 kb on + strand at 741.134 kb on + strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.157 kb on - strand at 741.166 kb on - strand at 741.183 kb on - strand, within CCNA_00685 at 741.186 kb on + strand, within CCNA_00685 at 741.189 kb on - strand, within CCNA_00685 at 741.194 kb on - strand, within CCNA_00685 at 741.205 kb on - strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.266 kb on + strand, within CCNA_00685 at 741.279 kb on + strand, within CCNA_00685 at 741.299 kb on + strand, within CCNA_00685 at 741.339 kb on - strand, within CCNA_00685 at 741.358 kb on - strand, within CCNA_00685 at 741.363 kb on + strand, within CCNA_00685 at 741.363 kb on + strand, within CCNA_00685 at 741.384 kb on - strand, within CCNA_00685 at 741.457 kb on - strand, within CCNA_00685 at 741.536 kb on + strand, within CCNA_00685 at 741.562 kb on - strand, within CCNA_00685 at 741.570 kb on - strand, within CCNA_00685 at 741.570 kb on - strand, within CCNA_00685 at 741.570 kb on - strand, within CCNA_00685 at 741.575 kb on + strand, within CCNA_00685 at 741.582 kb on + strand, within CCNA_00685 at 741.612 kb on + strand, within CCNA_00685 at 741.622 kb on + strand, within CCNA_00685 at 741.636 kb on + strand, within CCNA_00685 at 741.657 kb on - strand, within CCNA_00685 at 741.657 kb on - strand, within CCNA_00685 at 741.659 kb on + strand, within CCNA_00685 at 741.659 kb on - strand, within CCNA_00685 at 741.672 kb on - strand at 741.702 kb on - strand at 741.725 kb on + strand at 741.742 kb on - strand at 741.799 kb on - strand at 741.799 kb on - strand at 741.808 kb on - strand at 741.869 kb on + strand at 741.907 kb on + strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.974 kb on - strand at 742.008 kb on + strand at 742.013 kb on + strand at 742.013 kb on + strand at 742.013 kb on + strand at 742.013 kb on + strand at 742.022 kb on - strand at 742.023 kb on - strand at 742.038 kb on - strand at 742.038 kb on - strand at 742.046 kb on + strand, within CCNA_00686 at 742.046 kb on + strand, within CCNA_00686 at 742.046 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.093 kb on - strand, within CCNA_00686 at 742.098 kb on + strand, within CCNA_00686 at 742.100 kb on - strand, within CCNA_00686 at 742.106 kb on - strand, within CCNA_00686 at 742.108 kb on + strand, within CCNA_00686
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 739,475 + CCNA_00683 0.36 +1.0 739,480 + CCNA_00683 0.36 -0.2 739,483 - CCNA_00683 0.36 +0.2 739,483 - CCNA_00683 0.36 -1.0 739,483 - CCNA_00683 0.36 -0.8 739,485 + CCNA_00683 0.36 +0.0 739,508 - CCNA_00683 0.38 +0.4 739,566 - CCNA_00683 0.42 -0.8 739,578 - CCNA_00683 0.42 -1.5 739,609 - CCNA_00683 0.44 +0.0 739,645 + CCNA_00683 0.47 -0.6 739,645 + CCNA_00683 0.47 +0.9 739,653 - CCNA_00683 0.47 +0.9 739,653 - CCNA_00683 0.47 -2.0 739,658 - CCNA_00683 0.48 -0.2 739,659 + CCNA_00683 0.48 -0.1 739,688 + CCNA_00683 0.49 -0.8 739,720 + CCNA_00683 0.52 -0.7 739,775 - CCNA_00683 0.55 -0.4 739,792 + CCNA_00683 0.56 -0.2 739,801 - CCNA_00683 0.57 -0.7 739,845 - CCNA_00683 0.60 -0.6 739,846 + CCNA_00683 0.60 +0.2 739,904 - CCNA_00683 0.64 -0.4 739,908 + CCNA_00683 0.64 -0.3 739,926 - CCNA_00683 0.65 +0.0 739,974 + CCNA_00683 0.68 +0.0 739,979 + CCNA_00683 0.68 +0.2 739,987 - CCNA_00683 0.69 +0.4 740,039 - CCNA_00683 0.72 -1.7 740,099 - CCNA_00683 0.76 +0.5 740,106 + CCNA_00683 0.77 +0.9 740,106 + CCNA_00683 0.77 +0.6 740,106 + CCNA_00683 0.77 +0.4 740,106 + CCNA_00683 0.77 -0.2 740,106 + CCNA_00683 0.77 -0.1 740,106 + CCNA_00683 0.77 -1.4 740,106 + CCNA_00683 0.77 -0.5 740,106 + CCNA_00683 0.77 -0.1 740,106 + CCNA_00683 0.77 -0.3 740,106 + CCNA_00683 0.77 -0.2 740,111 + CCNA_00683 0.77 -0.2 740,114 - CCNA_00683 0.77 -0.2 740,114 - CCNA_00683 0.77 -1.4 740,114 - CCNA_00683 0.77 -0.9 740,114 - CCNA_00683 0.77 -0.9 740,114 - CCNA_00683 0.77 -0.0 740,114 - CCNA_00683 0.77 -1.4 740,120 - CCNA_00683 0.78 -0.6 740,125 + CCNA_00683 0.78 -1.9 740,125 + CCNA_00683 0.78 -1.4 740,125 + CCNA_00683 0.78 -1.2 740,187 - CCNA_00683 0.82 -1.8 740,202 - CCNA_00683 0.83 +0.2 740,222 - CCNA_00683 0.84 -1.5 740,253 + CCNA_00683 0.86 +0.1 740,253 + CCNA_00683 0.86 -2.0 740,257 + CCNA_00683 0.87 -1.7 740,261 - CCNA_00683 0.87 +0.6 740,261 - CCNA_00683 0.87 +0.6 740,282 - CCNA_00683 0.88 -1.5 740,308 - +1.2 740,351 + +1.1 740,364 - +0.0 740,378 - -1.0 740,388 + -0.6 740,391 - +0.7 740,393 + -0.1 740,396 - +1.1 740,424 + -0.3 740,424 + -0.9 740,430 - +0.5 740,436 + -0.1 740,444 - +0.5 740,460 + -0.4 740,460 + -0.2 740,461 + -0.2 740,461 + -1.1 740,468 - -0.1 740,469 - +1.5 740,469 - -0.8 740,471 + -1.4 740,471 + -2.0 740,471 + -0.6 740,471 + -1.5 740,472 + +0.7 740,479 - +0.4 740,479 - -0.1 740,479 - +0.2 740,479 - +1.1 740,479 - -0.5 740,479 - +0.5 740,479 - +1.2 740,492 + -0.3 740,492 + -0.1 740,523 + +1.1 740,541 - CCNA_00684 0.11 +0.4 740,557 - CCNA_00684 0.13 -0.1 740,643 - CCNA_00684 0.27 -1.9 740,707 - CCNA_00684 0.37 -2.6 740,795 - CCNA_00684 0.50 -0.4 740,795 - CCNA_00684 0.50 +1.3 741,134 + -0.4 741,134 + -0.2 741,142 - +0.6 741,142 - -0.5 741,157 - -0.1 741,166 - +0.5 741,183 - CCNA_00685 0.12 +0.8 741,186 + CCNA_00685 0.13 +0.3 741,189 - CCNA_00685 0.13 +0.7 741,194 - CCNA_00685 0.14 +0.1 741,205 - CCNA_00685 0.16 -0.5 741,256 + CCNA_00685 0.24 -0.5 741,266 + CCNA_00685 0.26 -0.8 741,279 + CCNA_00685 0.28 -0.7 741,299 + CCNA_00685 0.31 -0.2 741,339 - CCNA_00685 0.37 +0.2 741,358 - CCNA_00685 0.40 +0.1 741,363 + CCNA_00685 0.41 +0.9 741,363 + CCNA_00685 0.41 -0.9 741,384 - CCNA_00685 0.45 -0.4 741,457 - CCNA_00685 0.56 -0.2 741,536 + CCNA_00685 0.69 -3.3 741,562 - CCNA_00685 0.73 -0.4 741,570 - CCNA_00685 0.75 -0.3 741,570 - CCNA_00685 0.75 -0.6 741,570 - CCNA_00685 0.75 +0.5 741,575 + CCNA_00685 0.76 -0.2 741,582 + CCNA_00685 0.77 -0.6 741,612 + CCNA_00685 0.82 +0.4 741,622 + CCNA_00685 0.83 +0.2 741,636 + CCNA_00685 0.85 -0.3 741,657 - CCNA_00685 0.89 -0.5 741,657 - CCNA_00685 0.89 +0.7 741,659 + CCNA_00685 0.89 +0.3 741,659 - CCNA_00685 0.89 +0.1 741,672 - +0.2 741,702 - +0.4 741,725 + -0.7 741,742 - -1.4 741,799 - +0.4 741,799 - +0.1 741,808 - +0.4 741,869 + +0.9 741,907 + -0.2 741,915 - +0.6 741,915 - +0.3 741,915 - -0.6 741,974 - -1.9 742,008 + +0.3 742,013 + +0.0 742,013 + +0.4 742,013 + +1.1 742,013 + -1.5 742,022 - -0.8 742,023 - -0.6 742,038 - -0.1 742,038 - +0.1 742,046 + CCNA_00686 0.10 -0.4 742,046 + CCNA_00686 0.10 -0.7 742,046 + CCNA_00686 0.10 -0.7 742,061 + CCNA_00686 0.11 -1.0 742,061 + CCNA_00686 0.11 -1.8 742,061 + CCNA_00686 0.11 -0.2 742,061 + CCNA_00686 0.11 -1.0 742,061 + CCNA_00686 0.11 -0.4 742,069 - CCNA_00686 0.12 -1.1 742,069 - CCNA_00686 0.12 +0.1 742,069 - CCNA_00686 0.12 -1.3 742,069 - CCNA_00686 0.12 -1.0 742,069 - CCNA_00686 0.12 -0.7 742,093 - CCNA_00686 0.14 -0.0 742,098 + CCNA_00686 0.14 -0.8 742,100 - CCNA_00686 0.14 +0.4 742,106 - CCNA_00686 0.15 -1.5 742,108 + CCNA_00686 0.15 -0.5
Or see this region's nucleotide sequence