Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00586 and CCNA_00587 are separated by 187 nucleotides CCNA_00587 and CCNA_00588 are separated by 173 nucleotides CCNA_00588 and CCNA_00589 are separated by 7 nucleotides
CCNA_00586: CCNA_00586 - LytR/AlgR-family transcriptional regulator, at 614,415 to 615,746
_00586
CCNA_00587: CCNA_00587 - alpha/beta hydrolase family protein, at 615,934 to 617,430
_00587
CCNA_00588: CCNA_00588 - SapA domain protein, at 617,604 to 617,843
_00588
CCNA_00589: CCNA_00589 - hypothetical protein, at 617,851 to 618,567
_00589
Position (kb) 615
616
617
618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 614.943 kb on + strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.951 kb on - strand, within CCNA_00586 at 614.983 kb on - strand, within CCNA_00586 at 614.993 kb on - strand, within CCNA_00586 at 615.024 kb on - strand, within CCNA_00586 at 615.045 kb on - strand, within CCNA_00586 at 615.071 kb on - strand, within CCNA_00586 at 615.086 kb on + strand, within CCNA_00586 at 615.089 kb on - strand, within CCNA_00586 at 615.181 kb on - strand, within CCNA_00586 at 615.181 kb on - strand, within CCNA_00586 at 615.191 kb on + strand, within CCNA_00586 at 615.225 kb on - strand, within CCNA_00586 at 615.270 kb on + strand, within CCNA_00586 at 615.306 kb on + strand, within CCNA_00586 at 615.313 kb on - strand, within CCNA_00586 at 615.317 kb on + strand, within CCNA_00586 at 615.378 kb on - strand, within CCNA_00586 at 615.391 kb on - strand, within CCNA_00586 at 615.406 kb on - strand, within CCNA_00586 at 615.408 kb on + strand, within CCNA_00586 at 615.432 kb on - strand, within CCNA_00586 at 615.439 kb on + strand, within CCNA_00586 at 615.444 kb on + strand, within CCNA_00586 at 615.444 kb on + strand, within CCNA_00586 at 615.444 kb on + strand, within CCNA_00586 at 615.452 kb on - strand, within CCNA_00586 at 615.471 kb on + strand, within CCNA_00586 at 615.471 kb on + strand, within CCNA_00586 at 615.479 kb on - strand, within CCNA_00586 at 615.479 kb on - strand, within CCNA_00586 at 615.484 kb on - strand, within CCNA_00586 at 615.598 kb on - strand, within CCNA_00586 at 615.611 kb on + strand, within CCNA_00586 at 615.620 kb on + strand at 615.635 kb on + strand at 615.643 kb on + strand at 615.692 kb on - strand at 615.700 kb on - strand at 615.700 kb on - strand at 615.720 kb on - strand at 615.725 kb on - strand at 615.727 kb on + strand at 615.743 kb on + strand at 615.743 kb on + strand at 615.746 kb on - strand at 615.751 kb on - strand at 615.756 kb on - strand at 615.780 kb on - strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.804 kb on + strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.812 kb on - strand at 615.825 kb on + strand at 615.845 kb on + strand at 615.848 kb on - strand at 615.858 kb on - strand at 615.873 kb on - strand at 615.943 kb on + strand at 615.954 kb on + strand at 615.955 kb on + strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.962 kb on - strand at 615.963 kb on - strand at 615.963 kb on - strand at 615.964 kb on - strand at 615.982 kb on - strand at 615.992 kb on + strand at 616.045 kb on + strand at 616.057 kb on + strand at 616.057 kb on + strand at 616.057 kb on + strand at 616.057 kb on + strand at 616.057 kb on + strand at 616.065 kb on - strand at 616.123 kb on + strand, within CCNA_00587 at 616.166 kb on + strand, within CCNA_00587 at 616.182 kb on + strand, within CCNA_00587 at 616.198 kb on + strand, within CCNA_00587 at 616.201 kb on - strand, within CCNA_00587 at 616.358 kb on - strand, within CCNA_00587 at 616.361 kb on - strand, within CCNA_00587 at 616.362 kb on - strand, within CCNA_00587 at 616.365 kb on + strand, within CCNA_00587 at 616.376 kb on + strand, within CCNA_00587 at 616.390 kb on + strand, within CCNA_00587 at 616.398 kb on - strand, within CCNA_00587 at 616.412 kb on + strand, within CCNA_00587 at 616.426 kb on + strand, within CCNA_00587 at 616.461 kb on + strand, within CCNA_00587 at 616.469 kb on - strand, within CCNA_00587 at 616.476 kb on + strand, within CCNA_00587 at 616.586 kb on + strand, within CCNA_00587 at 616.603 kb on + strand, within CCNA_00587 at 616.611 kb on - strand, within CCNA_00587 at 616.616 kb on - strand, within CCNA_00587 at 616.636 kb on - strand, within CCNA_00587 at 616.636 kb on - strand, within CCNA_00587 at 616.648 kb on + strand, within CCNA_00587 at 616.656 kb on - strand, within CCNA_00587 at 616.656 kb on - strand, within CCNA_00587 at 616.658 kb on + strand, within CCNA_00587 at 616.661 kb on + strand, within CCNA_00587 at 616.666 kb on - strand, within CCNA_00587 at 616.679 kb on - strand, within CCNA_00587 at 616.679 kb on - strand, within CCNA_00587 at 616.720 kb on + strand, within CCNA_00587 at 616.735 kb on - strand, within CCNA_00587 at 616.811 kb on - strand, within CCNA_00587 at 616.829 kb on + strand, within CCNA_00587 at 616.834 kb on + strand, within CCNA_00587 at 616.834 kb on + strand, within CCNA_00587 at 616.834 kb on + strand, within CCNA_00587 at 616.834 kb on + strand, within CCNA_00587 at 616.837 kb on - strand, within CCNA_00587 at 616.842 kb on - strand, within CCNA_00587 at 616.842 kb on - strand, within CCNA_00587 at 616.842 kb on - strand, within CCNA_00587 at 616.849 kb on + strand, within CCNA_00587 at 616.849 kb on + strand, within CCNA_00587 at 616.857 kb on - strand, within CCNA_00587 at 616.902 kb on + strand, within CCNA_00587 at 616.943 kb on + strand, within CCNA_00587 at 616.946 kb on - strand, within CCNA_00587 at 616.955 kb on + strand, within CCNA_00587 at 616.972 kb on + strand, within CCNA_00587 at 616.972 kb on - strand, within CCNA_00587 at 617.024 kb on + strand, within CCNA_00587 at 617.066 kb on + strand, within CCNA_00587 at 617.071 kb on + strand, within CCNA_00587 at 617.096 kb on + strand, within CCNA_00587 at 617.096 kb on + strand, within CCNA_00587 at 617.104 kb on - strand, within CCNA_00587 at 617.109 kb on - strand, within CCNA_00587 at 617.109 kb on - strand, within CCNA_00587 at 617.156 kb on + strand, within CCNA_00587 at 617.156 kb on - strand, within CCNA_00587 at 617.157 kb on - strand, within CCNA_00587 at 617.161 kb on + strand, within CCNA_00587 at 617.166 kb on + strand, within CCNA_00587 at 617.201 kb on + strand, within CCNA_00587 at 617.234 kb on + strand, within CCNA_00587 at 617.235 kb on + strand, within CCNA_00587 at 617.235 kb on - strand, within CCNA_00587 at 617.254 kb on - strand, within CCNA_00587 at 617.256 kb on + strand, within CCNA_00587 at 617.259 kb on - strand, within CCNA_00587 at 617.269 kb on + strand, within CCNA_00587 at 617.277 kb on - strand, within CCNA_00587 at 617.285 kb on + strand at 617.285 kb on + strand at 617.334 kb on + strand at 617.341 kb on + strand at 617.341 kb on + strand at 617.341 kb on - strand at 617.441 kb on - strand at 617.451 kb on + strand at 617.465 kb on - strand at 617.475 kb on + strand at 617.484 kb on - strand at 617.493 kb on + strand at 617.501 kb on - strand at 617.501 kb on - strand at 617.501 kb on - strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.521 kb on + strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.529 kb on - strand at 617.531 kb on + strand at 617.531 kb on + strand at 617.535 kb on + strand at 617.539 kb on - strand at 617.539 kb on - strand at 617.539 kb on - strand at 617.539 kb on - strand at 617.588 kb on + strand at 617.588 kb on + strand at 617.656 kb on - strand, within CCNA_00588 at 617.664 kb on + strand, within CCNA_00588 at 617.686 kb on - strand, within CCNA_00588 at 617.693 kb on + strand, within CCNA_00588 at 617.700 kb on - strand, within CCNA_00588 at 617.701 kb on + strand, within CCNA_00588 at 617.726 kb on - strand, within CCNA_00588 at 617.798 kb on - strand, within CCNA_00588 at 617.816 kb on - strand, within CCNA_00588 at 617.868 kb on + strand at 617.881 kb on - strand at 617.904 kb on + strand at 617.907 kb on - strand at 617.925 kb on + strand, within CCNA_00589 at 617.943 kb on - strand, within CCNA_00589 at 617.945 kb on - strand, within CCNA_00589 at 617.984 kb on + strand, within CCNA_00589 at 617.984 kb on + strand, within CCNA_00589 at 617.984 kb on + strand, within CCNA_00589 at 618.002 kb on - strand, within CCNA_00589 at 618.002 kb on - strand, within CCNA_00589 at 618.029 kb on + strand, within CCNA_00589 at 618.059 kb on - strand, within CCNA_00589 at 618.082 kb on - strand, within CCNA_00589 at 618.164 kb on + strand, within CCNA_00589 at 618.164 kb on + strand, within CCNA_00589 at 618.192 kb on + strand, within CCNA_00589 at 618.206 kb on - strand, within CCNA_00589 at 618.228 kb on + strand, within CCNA_00589 at 618.236 kb on - strand, within CCNA_00589 at 618.249 kb on + strand, within CCNA_00589 at 618.260 kb on + strand, within CCNA_00589 at 618.275 kb on + strand, within CCNA_00589 at 618.302 kb on + strand, within CCNA_00589 at 618.369 kb on + strand, within CCNA_00589 at 618.393 kb on + strand, within CCNA_00589 at 618.397 kb on - strand, within CCNA_00589 at 618.406 kb on - strand, within CCNA_00589 at 618.409 kb on + strand, within CCNA_00589
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 614,943 + CCNA_00586 0.40 -0.2 614,951 - CCNA_00586 0.40 +0.6 614,951 - CCNA_00586 0.40 -1.2 614,951 - CCNA_00586 0.40 -0.0 614,983 - CCNA_00586 0.43 -0.3 614,993 - CCNA_00586 0.43 +0.5 615,024 - CCNA_00586 0.46 +0.6 615,045 - CCNA_00586 0.47 -0.5 615,071 - CCNA_00586 0.49 -0.4 615,086 + CCNA_00586 0.50 +0.1 615,089 - CCNA_00586 0.51 -1.5 615,181 - CCNA_00586 0.58 -1.1 615,181 - CCNA_00586 0.58 +0.9 615,191 + CCNA_00586 0.58 +0.8 615,225 - CCNA_00586 0.61 +0.0 615,270 + CCNA_00586 0.64 -0.8 615,306 + CCNA_00586 0.67 +1.2 615,313 - CCNA_00586 0.67 +0.2 615,317 + CCNA_00586 0.68 +1.0 615,378 - CCNA_00586 0.72 +0.8 615,391 - CCNA_00586 0.73 +0.6 615,406 - CCNA_00586 0.74 +0.4 615,408 + CCNA_00586 0.75 +1.2 615,432 - CCNA_00586 0.76 +0.1 615,439 + CCNA_00586 0.77 +1.4 615,444 + CCNA_00586 0.77 -0.2 615,444 + CCNA_00586 0.77 -0.1 615,444 + CCNA_00586 0.77 -0.8 615,452 - CCNA_00586 0.78 -1.1 615,471 + CCNA_00586 0.79 +0.8 615,471 + CCNA_00586 0.79 -0.1 615,479 - CCNA_00586 0.80 +0.6 615,479 - CCNA_00586 0.80 +0.1 615,484 - CCNA_00586 0.80 -2.1 615,598 - CCNA_00586 0.89 +0.2 615,611 + CCNA_00586 0.90 -1.0 615,620 + +0.7 615,635 + -0.8 615,643 + +0.2 615,692 - +0.0 615,700 - +1.4 615,700 - -0.2 615,720 - -1.2 615,725 - +0.6 615,727 + -0.0 615,743 + -0.5 615,743 + -0.1 615,746 - +1.5 615,751 - +0.6 615,756 - +0.0 615,780 - -0.7 615,804 + -0.1 615,804 + +0.7 615,804 + -0.6 615,804 + -0.5 615,812 - +1.5 615,812 - +1.0 615,812 - +0.3 615,812 - +0.2 615,812 - -0.7 615,812 - +0.4 615,812 - +0.1 615,812 - -0.5 615,812 - -0.3 615,825 + -0.1 615,845 + -1.7 615,848 - -0.4 615,858 - +1.1 615,873 - -0.4 615,943 + +0.9 615,954 + -1.2 615,955 + +0.1 615,962 - +0.2 615,962 - +0.6 615,962 - -1.4 615,962 - +0.1 615,962 - -0.2 615,963 - -0.1 615,963 - +1.3 615,964 - +1.2 615,982 - +0.5 615,992 + -0.0 616,045 + -1.2 616,057 + -0.4 616,057 + +0.8 616,057 + +1.3 616,057 + +1.1 616,057 + -0.2 616,065 - -0.1 616,123 + CCNA_00587 0.13 -0.5 616,166 + CCNA_00587 0.15 -0.2 616,182 + CCNA_00587 0.17 +0.2 616,198 + CCNA_00587 0.18 -1.0 616,201 - CCNA_00587 0.18 -0.1 616,358 - CCNA_00587 0.28 -1.4 616,361 - CCNA_00587 0.29 -0.2 616,362 - CCNA_00587 0.29 +0.5 616,365 + CCNA_00587 0.29 +0.0 616,376 + CCNA_00587 0.30 +0.9 616,390 + CCNA_00587 0.30 -0.5 616,398 - CCNA_00587 0.31 -0.7 616,412 + CCNA_00587 0.32 -2.9 616,426 + CCNA_00587 0.33 -1.2 616,461 + CCNA_00587 0.35 -0.4 616,469 - CCNA_00587 0.36 -0.3 616,476 + CCNA_00587 0.36 +0.6 616,586 + CCNA_00587 0.44 -0.3 616,603 + CCNA_00587 0.45 -0.6 616,611 - CCNA_00587 0.45 +0.5 616,616 - CCNA_00587 0.46 -0.4 616,636 - CCNA_00587 0.47 -2.2 616,636 - CCNA_00587 0.47 +0.0 616,648 + CCNA_00587 0.48 -1.0 616,656 - CCNA_00587 0.48 -0.8 616,656 - CCNA_00587 0.48 -0.8 616,658 + CCNA_00587 0.48 -0.9 616,661 + CCNA_00587 0.49 -0.2 616,666 - CCNA_00587 0.49 -0.5 616,679 - CCNA_00587 0.50 +0.5 616,679 - CCNA_00587 0.50 -0.4 616,720 + CCNA_00587 0.53 -0.1 616,735 - CCNA_00587 0.54 -0.4 616,811 - CCNA_00587 0.59 +0.3 616,829 + CCNA_00587 0.60 -1.4 616,834 + CCNA_00587 0.60 -1.3 616,834 + CCNA_00587 0.60 +0.2 616,834 + CCNA_00587 0.60 -1.6 616,834 + CCNA_00587 0.60 +0.2 616,837 - CCNA_00587 0.60 +0.5 616,842 - CCNA_00587 0.61 +0.1 616,842 - CCNA_00587 0.61 +0.2 616,842 - CCNA_00587 0.61 +0.3 616,849 + CCNA_00587 0.61 -0.8 616,849 + CCNA_00587 0.61 -0.9 616,857 - CCNA_00587 0.62 -0.3 616,902 + CCNA_00587 0.65 +0.8 616,943 + CCNA_00587 0.67 -0.7 616,946 - CCNA_00587 0.68 -0.6 616,955 + CCNA_00587 0.68 -1.0 616,972 + CCNA_00587 0.69 -1.2 616,972 - CCNA_00587 0.69 -0.7 617,024 + CCNA_00587 0.73 -0.5 617,066 + CCNA_00587 0.76 -1.0 617,071 + CCNA_00587 0.76 -0.4 617,096 + CCNA_00587 0.78 -0.4 617,096 + CCNA_00587 0.78 -2.4 617,104 - CCNA_00587 0.78 +0.4 617,109 - CCNA_00587 0.78 -0.3 617,109 - CCNA_00587 0.78 -0.6 617,156 + CCNA_00587 0.82 +0.1 617,156 - CCNA_00587 0.82 +0.0 617,157 - CCNA_00587 0.82 +1.9 617,161 + CCNA_00587 0.82 -1.5 617,166 + CCNA_00587 0.82 -0.5 617,201 + CCNA_00587 0.85 +0.2 617,234 + CCNA_00587 0.87 +0.0 617,235 + CCNA_00587 0.87 -0.1 617,235 - CCNA_00587 0.87 -1.2 617,254 - CCNA_00587 0.88 -1.0 617,256 + CCNA_00587 0.88 -0.1 617,259 - CCNA_00587 0.89 -0.2 617,269 + CCNA_00587 0.89 +0.7 617,277 - CCNA_00587 0.90 -2.3 617,285 + +0.0 617,285 + +0.1 617,334 + -0.6 617,341 + +1.1 617,341 + +0.5 617,341 - +0.3 617,441 - -1.3 617,451 + -0.3 617,465 - -1.0 617,475 + -0.9 617,484 - -0.2 617,493 + -0.4 617,501 - +0.8 617,501 - +0.7 617,501 - -0.2 617,521 + -0.4 617,521 + +0.6 617,521 + +0.9 617,521 + -1.9 617,521 + -0.7 617,521 + -0.4 617,529 - +0.3 617,529 - -0.4 617,529 - -1.3 617,529 - -0.2 617,529 - -1.8 617,529 - +0.8 617,531 + -0.8 617,531 + -0.8 617,535 + -0.3 617,539 - -0.8 617,539 - +1.1 617,539 - -0.9 617,539 - -0.9 617,588 + -0.4 617,588 + -0.2 617,656 - CCNA_00588 0.22 -2.2 617,664 + CCNA_00588 0.25 -1.9 617,686 - CCNA_00588 0.34 -1.5 617,693 + CCNA_00588 0.37 +0.3 617,700 - CCNA_00588 0.40 -1.9 617,701 + CCNA_00588 0.40 +0.9 617,726 - CCNA_00588 0.51 -0.1 617,798 - CCNA_00588 0.81 -0.5 617,816 - CCNA_00588 0.88 -0.6 617,868 + -1.3 617,881 - +0.0 617,904 + +0.0 617,907 - -0.0 617,925 + CCNA_00589 0.10 +1.3 617,943 - CCNA_00589 0.13 -0.3 617,945 - CCNA_00589 0.13 +0.1 617,984 + CCNA_00589 0.19 -1.4 617,984 + CCNA_00589 0.19 +0.2 617,984 + CCNA_00589 0.19 -2.2 618,002 - CCNA_00589 0.21 -0.3 618,002 - CCNA_00589 0.21 +0.4 618,029 + CCNA_00589 0.25 -0.7 618,059 - CCNA_00589 0.29 -1.5 618,082 - CCNA_00589 0.32 -0.5 618,164 + CCNA_00589 0.44 -0.6 618,164 + CCNA_00589 0.44 +0.1 618,192 + CCNA_00589 0.48 -1.0 618,206 - CCNA_00589 0.50 +0.0 618,228 + CCNA_00589 0.53 -1.6 618,236 - CCNA_00589 0.54 -1.0 618,249 + CCNA_00589 0.56 -1.6 618,260 + CCNA_00589 0.57 +0.9 618,275 + CCNA_00589 0.59 +0.9 618,302 + CCNA_00589 0.63 +1.4 618,369 + CCNA_00589 0.72 -1.9 618,393 + CCNA_00589 0.76 -2.4 618,397 - CCNA_00589 0.76 -1.9 618,406 - CCNA_00589 0.77 -1.7 618,409 + CCNA_00589 0.78 -1.1
Or see this region's nucleotide sequence