Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00542

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00540 and CCNA_03923 are separated by 130 nucleotidesCCNA_03923 and CCNA_00541 are separated by 63 nucleotidesCCNA_00541 and CCNA_00542 overlap by 4 nucleotidesCCNA_00542 and CCNA_00543 are separated by 48 nucleotidesCCNA_00543 and CCNA_00544 are separated by 215 nucleotides CCNA_00540: CCNA_00540 - coproporphyrinogen III oxidase, at 559,904 to 560,776 _00540 CCNA_03923: CCNA_03923 - hypothetical protein, at 560,907 to 560,972 _03923 CCNA_00541: CCNA_00541 - hypothetical protein, at 561,036 to 561,344 _00541 CCNA_00542: CCNA_00542 - hypothetical protein, at 561,341 to 561,664 _00542 CCNA_00543: CCNA_00543 - methyl-accepting chemotaxis protein, at 561,713 to 562,363 _00543 CCNA_00544: CCNA_00544 - acetyl-CoA acetyltransferase, at 562,579 to 563,754 _00544 Position (kb) 561 562Strain fitness (log2 ratio) -2 -1 0 1at 560.502 kb on + strand, within CCNA_00540at 560.660 kb on - strand, within CCNA_00540at 560.660 kb on - strand, within CCNA_00540at 560.779 kb on - strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.784 kb on + strandat 560.806 kb on + strandat 560.856 kb on + strandat 560.864 kb on - strandat 560.867 kb on + strandat 560.883 kb on + strandat 560.889 kb on - strandat 560.889 kb on - strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.910 kb on + strandat 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.918 kb on - strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.925 kb on + strand, within CCNA_03923at 560.933 kb on - strand, within CCNA_03923at 560.967 kb on + strandat 560.968 kb on + strandat 560.970 kb on - strandat 560.970 kb on - strandat 560.976 kb on - strandat 561.102 kb on + strand, within CCNA_00541at 561.126 kb on + strand, within CCNA_00541at 561.206 kb on + strand, within CCNA_00541at 561.214 kb on - strand, within CCNA_00541at 561.261 kb on - strand, within CCNA_00541at 561.296 kb on + strand, within CCNA_00541at 561.296 kb on + strand, within CCNA_00541at 561.321 kb on + strandat 561.339 kb on + strandat 561.347 kb on - strandat 561.365 kb on + strandat 561.395 kb on + strand, within CCNA_00542at 561.431 kb on + strand, within CCNA_00542at 561.431 kb on + strand, within CCNA_00542at 561.439 kb on - strand, within CCNA_00542at 561.464 kb on + strand, within CCNA_00542at 561.464 kb on + strand, within CCNA_00542at 561.469 kb on + strand, within CCNA_00542at 561.472 kb on - strand, within CCNA_00542at 561.488 kb on - strand, within CCNA_00542at 561.488 kb on - strand, within CCNA_00542at 561.510 kb on - strand, within CCNA_00542at 561.518 kb on + strand, within CCNA_00542at 561.545 kb on - strand, within CCNA_00542at 561.571 kb on - strand, within CCNA_00542at 561.571 kb on - strand, within CCNA_00542at 561.587 kb on - strand, within CCNA_00542at 561.592 kb on - strand, within CCNA_00542at 561.627 kb on + strand, within CCNA_00542at 561.627 kb on + strand, within CCNA_00542at 561.627 kb on + strand, within CCNA_00542at 561.660 kb on + strandat 561.660 kb on + strandat 561.673 kb on - strandat 561.673 kb on - strandat 561.680 kb on - strandat 561.683 kb on + strandat 561.696 kb on - strandat 561.701 kb on + strandat 561.707 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.711 kb on + strandat 561.719 kb on - strandat 561.719 kb on - strandat 561.720 kb on + strandat 561.753 kb on + strandat 561.817 kb on + strand, within CCNA_00543at 561.863 kb on + strand, within CCNA_00543at 561.911 kb on - strand, within CCNA_00543at 561.916 kb on - strand, within CCNA_00543at 561.916 kb on - strand, within CCNA_00543at 561.925 kb on - strand, within CCNA_00543at 561.930 kb on - strand, within CCNA_00543at 561.966 kb on + strand, within CCNA_00543at 561.971 kb on + strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 561.974 kb on - strand, within CCNA_00543at 562.051 kb on - strand, within CCNA_00543at 562.111 kb on - strand, within CCNA_00543at 562.145 kb on + strand, within CCNA_00543at 562.145 kb on + strand, within CCNA_00543at 562.229 kb on - strand, within CCNA_00543at 562.239 kb on - strand, within CCNA_00543at 562.259 kb on - strand, within CCNA_00543at 562.378 kb on - strandat 562.435 kb on + strandat 562.435 kb on + strandat 562.444 kb on + strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.452 kb on - strandat 562.455 kb on + strandat 562.491 kb on + strandat 562.553 kb on + strandat 562.553 kb on + strandat 562.555 kb on - strandat 562.561 kb on - strandat 562.615 kb on + strandat 562.625 kb on + strandat 562.629 kb on - strandat 562.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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560,502 + CCNA_00540 0.68 -0.1
560,660 - CCNA_00540 0.87 +0.9
560,660 - CCNA_00540 0.87 -1.0
560,779 - +0.1
560,784 + +1.2
560,784 + -0.8
560,784 + +1.0
560,784 + +0.3
560,806 + +1.2
560,856 + -0.6
560,864 - -0.0
560,867 + +0.4
560,883 + -0.2
560,889 - -0.5
560,889 - +0.1
560,910 + +0.4
560,910 + -0.5
560,910 + -0.1
560,910 + -0.3
560,910 + -0.0
560,910 + +0.5
560,910 + -0.1
560,918 - CCNA_03923 0.17 -0.8
560,918 - CCNA_03923 0.17 -0.4
560,918 - CCNA_03923 0.17 +1.7
560,918 - CCNA_03923 0.17 +0.7
560,918 - CCNA_03923 0.17 -0.1
560,918 - CCNA_03923 0.17 +0.2
560,918 - CCNA_03923 0.17 -0.3
560,925 + CCNA_03923 0.27 -0.4
560,925 + CCNA_03923 0.27 +0.8
560,925 + CCNA_03923 0.27 -0.1
560,933 - CCNA_03923 0.39 -0.0
560,967 + +0.1
560,968 + +0.3
560,970 - +0.1
560,970 - +0.0
560,976 - +0.1
561,102 + CCNA_00541 0.21 -0.2
561,126 + CCNA_00541 0.29 -0.2
561,206 + CCNA_00541 0.55 +0.0
561,214 - CCNA_00541 0.58 -1.2
561,261 - CCNA_00541 0.73 +0.9
561,296 + CCNA_00541 0.84 -0.7
561,296 + CCNA_00541 0.84 +0.6
561,321 + -1.7
561,339 + -0.3
561,347 - +1.0
561,365 + +0.6
561,395 + CCNA_00542 0.17 -1.6
561,431 + CCNA_00542 0.28 -1.1
561,431 + CCNA_00542 0.28 +0.4
561,439 - CCNA_00542 0.30 -0.9
561,464 + CCNA_00542 0.38 -1.6
561,464 + CCNA_00542 0.38 +1.3
561,469 + CCNA_00542 0.40 +0.3
561,472 - CCNA_00542 0.40 +1.0
561,488 - CCNA_00542 0.45 +1.4
561,488 - CCNA_00542 0.45 -0.1
561,510 - CCNA_00542 0.52 +0.3
561,518 + CCNA_00542 0.55 -2.0
561,545 - CCNA_00542 0.63 +0.4
561,571 - CCNA_00542 0.71 +0.4
561,571 - CCNA_00542 0.71 +0.3
561,587 - CCNA_00542 0.76 +0.5
561,592 - CCNA_00542 0.77 +0.5
561,627 + CCNA_00542 0.88 -0.4
561,627 + CCNA_00542 0.88 +1.2
561,627 + CCNA_00542 0.88 +0.4
561,660 + -0.9
561,660 + -0.9
561,673 - +0.7
561,673 - -0.1
561,680 - +0.3
561,683 + -1.2
561,696 - -0.0
561,701 + +0.5
561,707 + -0.8
561,711 + +0.4
561,711 + -1.8
561,711 + -0.5
561,719 - +0.0
561,719 - -0.3
561,720 + -0.1
561,753 + +0.6
561,817 + CCNA_00543 0.16 -2.4
561,863 + CCNA_00543 0.23 +0.9
561,911 - CCNA_00543 0.30 -0.1
561,916 - CCNA_00543 0.31 -0.7
561,916 - CCNA_00543 0.31 +0.3
561,925 - CCNA_00543 0.33 -0.1
561,930 - CCNA_00543 0.33 +0.0
561,966 + CCNA_00543 0.39 +0.9
561,971 + CCNA_00543 0.40 -0.7
561,974 - CCNA_00543 0.40 +0.8
561,974 - CCNA_00543 0.40 +1.3
562,051 - CCNA_00543 0.52 +0.4
562,111 - CCNA_00543 0.61 +0.2
562,145 + CCNA_00543 0.66 -0.1
562,145 + CCNA_00543 0.66 -0.4
562,229 - CCNA_00543 0.79 +0.3
562,239 - CCNA_00543 0.81 -0.2
562,259 - CCNA_00543 0.84 -0.1
562,378 - +1.5
562,435 + -0.5
562,435 + -0.2
562,444 + -0.3
562,452 - -0.3
562,452 - -0.6
562,452 - -0.8
562,452 - -0.2
562,455 + -1.8
562,491 + -0.3
562,553 + -0.3
562,553 + -1.4
562,555 - -0.4
562,561 - +0.7
562,615 + -0.8
562,625 + -0.2
562,629 - -0.8
562,663 - -0.1

Or see this region's nucleotide sequence