Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00511

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00509 and CCNA_00510 overlap by 4 nucleotidesCCNA_00510 and CCNA_00511 overlap by 1 nucleotidesCCNA_00511 and CCNA_00512 are separated by 64 nucleotides CCNA_00509: CCNA_00509 - phosphoglycerate mutase family, at 523,993 to 524,526 _00509 CCNA_00510: CCNA_00510 - carboxymethylenebutenolidase, at 524,523 to 525,200 _00510 CCNA_00511: CCNA_00511 - carboxymethylenebutenolidase, at 525,200 to 525,880 _00511 CCNA_00512: CCNA_00512 - GTP-binding protein, probable translation factor, at 525,945 to 527,045 _00512 Position (kb) 525 526Strain fitness (log2 ratio) -2 -1 0 1at 524.227 kb on + strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.235 kb on - strand, within CCNA_00509at 524.282 kb on + strand, within CCNA_00509at 524.287 kb on + strand, within CCNA_00509at 524.295 kb on - strand, within CCNA_00509at 524.304 kb on - strand, within CCNA_00509at 524.307 kb on - strand, within CCNA_00509at 524.317 kb on - strand, within CCNA_00509at 524.323 kb on + strand, within CCNA_00509at 524.331 kb on - strand, within CCNA_00509at 524.333 kb on + strand, within CCNA_00509at 524.358 kb on - strand, within CCNA_00509at 524.445 kb on - strand, within CCNA_00509at 524.466 kb on - strand, within CCNA_00509at 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.494 kb on + strandat 524.501 kb on - strandat 524.502 kb on - strandat 524.528 kb on + strandat 524.561 kb on + strandat 524.569 kb on - strandat 524.582 kb on - strandat 524.635 kb on + strand, within CCNA_00510at 524.694 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.724 kb on + strand, within CCNA_00510at 524.726 kb on + strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.732 kb on - strand, within CCNA_00510at 524.741 kb on - strand, within CCNA_00510at 524.742 kb on - strand, within CCNA_00510at 524.749 kb on - strand, within CCNA_00510at 524.778 kb on + strand, within CCNA_00510at 524.812 kb on - strand, within CCNA_00510at 524.856 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.863 kb on + strand, within CCNA_00510at 524.875 kb on - strand, within CCNA_00510at 524.890 kb on + strand, within CCNA_00510at 524.898 kb on - strand, within CCNA_00510at 524.903 kb on - strand, within CCNA_00510at 524.915 kb on - strand, within CCNA_00510at 524.915 kb on - strand, within CCNA_00510at 524.939 kb on + strand, within CCNA_00510at 524.955 kb on + strand, within CCNA_00510at 524.964 kb on + strand, within CCNA_00510at 524.987 kb on - strand, within CCNA_00510at 525.011 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.032 kb on + strand, within CCNA_00510at 525.033 kb on - strand, within CCNA_00510at 525.035 kb on + strand, within CCNA_00510at 525.040 kb on - strand, within CCNA_00510at 525.042 kb on - strand, within CCNA_00510at 525.055 kb on - strand, within CCNA_00510at 525.065 kb on + strand, within CCNA_00510at 525.072 kb on - strand, within CCNA_00510at 525.096 kb on - strand, within CCNA_00510at 525.148 kb on - strandat 525.153 kb on - strandat 525.210 kb on - strandat 525.219 kb on + strandat 525.236 kb on + strandat 525.242 kb on - strandat 525.330 kb on + strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.365 kb on - strand, within CCNA_00511at 525.437 kb on - strand, within CCNA_00511at 525.509 kb on + strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.517 kb on - strand, within CCNA_00511at 525.559 kb on - strand, within CCNA_00511at 525.578 kb on + strand, within CCNA_00511at 525.617 kb on - strand, within CCNA_00511at 525.664 kb on - strand, within CCNA_00511at 525.674 kb on - strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.709 kb on + strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.717 kb on - strand, within CCNA_00511at 525.740 kb on + strand, within CCNA_00511at 525.752 kb on + strand, within CCNA_00511at 525.828 kb on + strandat 525.829 kb on - strandat 525.835 kb on + strandat 525.836 kb on - strandat 525.843 kb on - strandat 525.843 kb on - strandat 525.862 kb on + strandat 525.862 kb on + strandat 525.870 kb on + strandat 525.878 kb on - strandat 525.890 kb on - strandat 525.943 kb on + strandat 525.951 kb on - strandat 525.951 kb on - strandat 525.971 kb on - strandat 526.057 kb on - strand, within CCNA_00512at 526.094 kb on - strand, within CCNA_00512at 526.133 kb on + strand, within CCNA_00512at 526.177 kb on - strand, within CCNA_00512at 526.179 kb on - strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.212 kb on + strand, within CCNA_00512at 526.236 kb on + strand, within CCNA_00512at 526.244 kb on - strand, within CCNA_00512at 526.256 kb on + strand, within CCNA_00512at 526.264 kb on + strand, within CCNA_00512at 526.350 kb on + strand, within CCNA_00512at 526.350 kb on + strand, within CCNA_00512at 526.369 kb on + strand, within CCNA_00512at 526.395 kb on - strand, within CCNA_00512at 526.407 kb on + strand, within CCNA_00512at 526.452 kb on - strand, within CCNA_00512at 526.455 kb on - strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.465 kb on + strand, within CCNA_00512at 526.473 kb on - strand, within CCNA_00512at 526.479 kb on - strand, within CCNA_00512at 526.566 kb on - strand, within CCNA_00512at 526.627 kb on - strand, within CCNA_00512at 526.629 kb on + strand, within CCNA_00512at 526.664 kb on + strand, within CCNA_00512at 526.782 kb on + strand, within CCNA_00512at 526.795 kb on + strand, within CCNA_00512at 526.802 kb on - strand, within CCNA_00512at 526.820 kb on - strand, within CCNA_00512at 526.867 kb on - strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512at 526.873 kb on + strand, within CCNA_00512

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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524,227 + CCNA_00509 0.44 -0.6
524,235 - CCNA_00509 0.45 +0.6
524,235 - CCNA_00509 0.45 -0.0
524,235 - CCNA_00509 0.45 +0.4
524,235 - CCNA_00509 0.45 -1.0
524,282 + CCNA_00509 0.54 -0.1
524,287 + CCNA_00509 0.55 +1.0
524,295 - CCNA_00509 0.57 +0.6
524,304 - CCNA_00509 0.58 +1.1
524,307 - CCNA_00509 0.59 -0.8
524,317 - CCNA_00509 0.61 +0.0
524,323 + CCNA_00509 0.62 +0.7
524,331 - CCNA_00509 0.63 +0.4
524,333 + CCNA_00509 0.64 +0.2
524,358 - CCNA_00509 0.68 -0.3
524,445 - CCNA_00509 0.85 +0.5
524,466 - CCNA_00509 0.89 -0.5
524,494 + -0.3
524,494 + +0.5
524,494 + +0.2
524,494 + -0.1
524,494 + +1.4
524,501 - +0.5
524,502 - -1.3
524,528 + -1.2
524,561 + -0.6
524,569 - -0.6
524,582 - -0.1
524,635 + CCNA_00510 0.17 +0.5
524,694 + CCNA_00510 0.25 +0.3
524,724 + CCNA_00510 0.30 +0.5
524,724 + CCNA_00510 0.30 +0.2
524,724 + CCNA_00510 0.30 +0.3
524,726 + CCNA_00510 0.30 +0.4
524,732 - CCNA_00510 0.31 -1.7
524,732 - CCNA_00510 0.31 -0.2
524,732 - CCNA_00510 0.31 +0.5
524,741 - CCNA_00510 0.32 +0.2
524,742 - CCNA_00510 0.32 -0.5
524,749 - CCNA_00510 0.33 -0.2
524,778 + CCNA_00510 0.38 -0.5
524,812 - CCNA_00510 0.43 +1.1
524,856 + CCNA_00510 0.49 +0.7
524,863 + CCNA_00510 0.50 +0.1
524,863 + CCNA_00510 0.50 +0.2
524,875 - CCNA_00510 0.52 +0.8
524,890 + CCNA_00510 0.54 -2.7
524,898 - CCNA_00510 0.55 +0.3
524,903 - CCNA_00510 0.56 +0.1
524,915 - CCNA_00510 0.58 +0.3
524,915 - CCNA_00510 0.58 +0.7
524,939 + CCNA_00510 0.61 -0.9
524,955 + CCNA_00510 0.64 -0.2
524,964 + CCNA_00510 0.65 -0.1
524,987 - CCNA_00510 0.68 -0.2
525,011 + CCNA_00510 0.72 -0.3
525,032 + CCNA_00510 0.75 +1.3
525,032 + CCNA_00510 0.75 +0.1
525,032 + CCNA_00510 0.75 -0.1
525,033 - CCNA_00510 0.75 +0.3
525,035 + CCNA_00510 0.76 +0.4
525,040 - CCNA_00510 0.76 +0.1
525,042 - CCNA_00510 0.77 +0.2
525,055 - CCNA_00510 0.78 +0.4
525,065 + CCNA_00510 0.80 +0.7
525,072 - CCNA_00510 0.81 -1.1
525,096 - CCNA_00510 0.85 +0.9
525,148 - +0.9
525,153 - +0.3
525,210 - +0.1
525,219 + -0.5
525,236 + +0.0
525,242 - +0.0
525,330 + CCNA_00511 0.19 +1.2
525,365 - CCNA_00511 0.24 -0.2
525,365 - CCNA_00511 0.24 -0.0
525,437 - CCNA_00511 0.35 +0.9
525,509 + CCNA_00511 0.45 +1.2
525,517 - CCNA_00511 0.47 +0.3
525,517 - CCNA_00511 0.47 +0.4
525,559 - CCNA_00511 0.53 +0.0
525,578 + CCNA_00511 0.56 +0.5
525,617 - CCNA_00511 0.61 +0.7
525,664 - CCNA_00511 0.68 +0.2
525,674 - CCNA_00511 0.70 +0.4
525,709 + CCNA_00511 0.75 -0.1
525,709 + CCNA_00511 0.75 +0.3
525,717 - CCNA_00511 0.76 +0.3
525,717 - CCNA_00511 0.76 +0.3
525,740 + CCNA_00511 0.79 +0.8
525,752 + CCNA_00511 0.81 +0.2
525,828 + +0.2
525,829 - -0.3
525,835 + +0.4
525,836 - -0.1
525,843 - +0.6
525,843 - +0.1
525,862 + -0.2
525,862 + +0.1
525,870 + +0.2
525,878 - -0.9
525,890 - +0.2
525,943 + -1.3
525,951 - +0.1
525,951 - -0.1
525,971 - +0.9
526,057 - CCNA_00512 0.10 -2.0
526,094 - CCNA_00512 0.14 +0.3
526,133 + CCNA_00512 0.17 +0.3
526,177 - CCNA_00512 0.21 -1.1
526,179 - CCNA_00512 0.21 -0.1
526,212 + CCNA_00512 0.24 +0.1
526,212 + CCNA_00512 0.24 -0.5
526,236 + CCNA_00512 0.26 +1.5
526,244 - CCNA_00512 0.27 +0.7
526,256 + CCNA_00512 0.28 -0.6
526,264 + CCNA_00512 0.29 -0.9
526,350 + CCNA_00512 0.37 -0.6
526,350 + CCNA_00512 0.37 -0.1
526,369 + CCNA_00512 0.39 +0.9
526,395 - CCNA_00512 0.41 +0.4
526,407 + CCNA_00512 0.42 -0.0
526,452 - CCNA_00512 0.46 +0.9
526,455 - CCNA_00512 0.46 -0.2
526,465 + CCNA_00512 0.47 +0.5
526,465 + CCNA_00512 0.47 -1.1
526,473 - CCNA_00512 0.48 -1.5
526,479 - CCNA_00512 0.49 -0.3
526,566 - CCNA_00512 0.56 -0.0
526,627 - CCNA_00512 0.62 -0.7
526,629 + CCNA_00512 0.62 -0.3
526,664 + CCNA_00512 0.65 -0.1
526,782 + CCNA_00512 0.76 +0.1
526,795 + CCNA_00512 0.77 -1.4
526,802 - CCNA_00512 0.78 -1.5
526,820 - CCNA_00512 0.79 -0.3
526,867 - CCNA_00512 0.84 -1.5
526,873 + CCNA_00512 0.84 -0.6
526,873 + CCNA_00512 0.84 -0.6

Or see this region's nucleotide sequence