Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00495

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00492 and CCNA_00493 are separated by 2 nucleotidesCCNA_00493 and CCNA_00494 are separated by 6 nucleotidesCCNA_00494 and CCNA_00495 are separated by 52 nucleotidesCCNA_00495 and CCNA_00496 overlap by 4 nucleotides CCNA_00492: CCNA_00492 - cysteinyl-tRNA synthetase, at 509,704 to 511,095 _00492 CCNA_00493: CCNA_00493 - putative polyketide cyclase-dehydrase/lipid transport protein, at 511,098 to 511,559 _00493 CCNA_00494: CCNA_00494 - transport protein, at 511,566 to 512,027 _00494 CCNA_00495: CCNA_00495 - putative membrane protein insertion efficiency factor YidD, at 512,080 to 512,334 _00495 CCNA_00496: CCNA_00496 - threonyl-tRNA synthetase, at 512,331 to 514,298 _00496 Position (kb) 512 513Strain fitness (log2 ratio) -2 -1 0 1at 511.126 kb on - strandat 511.185 kb on + strand, within CCNA_00493at 511.219 kb on + strand, within CCNA_00493at 511.231 kb on + strand, within CCNA_00493at 511.231 kb on + strand, within CCNA_00493at 511.231 kb on + strand, within CCNA_00493at 511.231 kb on + strand, within CCNA_00493at 511.239 kb on - strand, within CCNA_00493at 511.284 kb on - strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.298 kb on + strand, within CCNA_00493at 511.298 kb on + strand, within CCNA_00493at 511.301 kb on - strand, within CCNA_00493at 511.322 kb on - strand, within CCNA_00493at 511.383 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.445 kb on - strand, within CCNA_00493at 511.447 kb on - strand, within CCNA_00493at 511.490 kb on - strand, within CCNA_00493at 511.496 kb on + strand, within CCNA_00493at 511.522 kb on + strandat 511.577 kb on + strandat 511.577 kb on + strandat 511.577 kb on + strandat 511.577 kb on + strandat 511.577 kb on + strandat 511.585 kb on - strandat 511.992 kb on + strandat 512.003 kb on + strandat 512.011 kb on - strandat 512.037 kb on + strandat 512.055 kb on - strandat 512.085 kb on - strandat 512.087 kb on + strandat 512.099 kb on + strandat 512.107 kb on - strand, within CCNA_00495at 512.109 kb on + strand, within CCNA_00495at 512.117 kb on - strand, within CCNA_00495at 512.145 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.167 kb on + strand, within CCNA_00495at 512.170 kb on - strand, within CCNA_00495at 512.170 kb on - strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.205 kb on + strand, within CCNA_00495at 512.225 kb on - strand, within CCNA_00495at 512.231 kb on + strand, within CCNA_00495at 512.239 kb on - strand, within CCNA_00495at 512.278 kb on + strand, within CCNA_00495at 512.279 kb on + strand, within CCNA_00495

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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511,126 - +0.8
511,185 + CCNA_00493 0.19 +0.2
511,219 + CCNA_00493 0.26 -0.0
511,231 + CCNA_00493 0.29 -0.6
511,231 + CCNA_00493 0.29 -0.1
511,231 + CCNA_00493 0.29 -0.4
511,231 + CCNA_00493 0.29 -0.5
511,239 - CCNA_00493 0.31 +0.6
511,284 - CCNA_00493 0.40 -1.3
511,293 + CCNA_00493 0.42 +0.2
511,293 + CCNA_00493 0.42 -0.6
511,298 + CCNA_00493 0.43 +0.3
511,298 + CCNA_00493 0.43 +0.8
511,301 - CCNA_00493 0.44 +1.3
511,322 - CCNA_00493 0.48 -0.9
511,383 + CCNA_00493 0.62 -0.2
511,424 + CCNA_00493 0.71 +0.4
511,424 + CCNA_00493 0.71 -0.6
511,424 + CCNA_00493 0.71 +0.3
511,424 + CCNA_00493 0.71 +0.4
511,424 + CCNA_00493 0.71 +0.9
511,424 + CCNA_00493 0.71 -0.3
511,432 - CCNA_00493 0.72 -1.1
511,445 - CCNA_00493 0.75 -1.3
511,447 - CCNA_00493 0.76 +0.5
511,490 - CCNA_00493 0.85 -0.3
511,496 + CCNA_00493 0.86 +1.4
511,522 + -2.2
511,577 + -0.2
511,577 + -1.3
511,577 + +0.5
511,577 + -0.2
511,577 + -0.4
511,585 - -1.4
511,992 + -0.2
512,003 + -0.6
512,011 - +0.5
512,037 + +1.0
512,055 - -1.1
512,085 - -0.6
512,087 + +0.5
512,099 + +0.8
512,107 - CCNA_00495 0.11 -1.7
512,109 + CCNA_00495 0.11 +0.5
512,117 - CCNA_00495 0.15 -1.3
512,145 + CCNA_00495 0.25 +0.8
512,162 + CCNA_00495 0.32 -0.2
512,167 + CCNA_00495 0.34 +0.1
512,170 - CCNA_00495 0.35 +0.5
512,170 - CCNA_00495 0.35 +0.6
512,177 + CCNA_00495 0.38 -0.1
512,205 + CCNA_00495 0.49 +0.0
512,225 - CCNA_00495 0.57 -0.6
512,231 + CCNA_00495 0.59 +0.1
512,239 - CCNA_00495 0.62 +0.8
512,278 + CCNA_00495 0.78 -0.3
512,279 + CCNA_00495 0.78 -0.2

Or see this region's nucleotide sequence