Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00481

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00480 and CCNA_00481 are separated by 329 nucleotidesCCNA_00481 and CCNA_00482 overlap by 14 nucleotides CCNA_00480: CCNA_00480 - bacteriophage P4 integrase, at 495,724 to 497,022 _00480 CCNA_00481: CCNA_00481 - HipB transcriptional regulator, at 497,352 to 497,597 _00481 CCNA_00482: CCNA_00482 - toxin protein module HipA, at 497,584 to 498,855 _00482 Position (kb) 497 498Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 496.363 kb on - strand, within CCNA_00480at 496.364 kb on + strand, within CCNA_00480at 496.417 kb on + strand, within CCNA_00480at 496.417 kb on + strand, within CCNA_00480at 496.425 kb on - strand, within CCNA_00480at 496.425 kb on - strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.453 kb on + strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.461 kb on - strand, within CCNA_00480at 496.463 kb on + strand, within CCNA_00480at 496.516 kb on - strand, within CCNA_00480at 496.529 kb on + strand, within CCNA_00480at 496.536 kb on - strand, within CCNA_00480at 496.583 kb on - strand, within CCNA_00480at 496.585 kb on + strand, within CCNA_00480at 496.585 kb on + strand, within CCNA_00480at 496.585 kb on + strand, within CCNA_00480at 496.588 kb on - strand, within CCNA_00480at 496.593 kb on - strand, within CCNA_00480at 496.617 kb on - strand, within CCNA_00480at 496.623 kb on + strand, within CCNA_00480at 496.651 kb on - strand, within CCNA_00480at 496.725 kb on - strand, within CCNA_00480at 496.726 kb on - strand, within CCNA_00480at 496.728 kb on + strand, within CCNA_00480at 496.796 kb on - strand, within CCNA_00480at 496.808 kb on + strand, within CCNA_00480at 496.821 kb on - strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.842 kb on + strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.850 kb on - strand, within CCNA_00480at 496.867 kb on + strand, within CCNA_00480at 496.885 kb on - strand, within CCNA_00480at 496.889 kb on + strand, within CCNA_00480at 496.935 kb on + strandat 496.941 kb on + strandat 496.961 kb on + strandat 496.961 kb on + strandat 496.961 kb on + strandat 496.969 kb on - strandat 496.981 kb on + strandat 496.986 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.033 kb on + strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.041 kb on - strandat 497.060 kb on - strandat 497.108 kb on - strandat 497.140 kb on - strandat 497.145 kb on + strandat 497.153 kb on - strandat 497.153 kb on - strandat 497.177 kb on + strandat 497.177 kb on + strandat 497.177 kb on + strandat 497.177 kb on + strandat 497.177 kb on + strandat 497.185 kb on - strandat 497.190 kb on - strandat 497.201 kb on + strandat 497.219 kb on + strandat 497.227 kb on - strandat 497.255 kb on - strandat 497.370 kb on + strandat 497.370 kb on + strandat 497.370 kb on + strandat 497.370 kb on + strandat 497.370 kb on + strandat 497.378 kb on - strand, within CCNA_00481at 497.378 kb on - strand, within CCNA_00481at 497.378 kb on - strand, within CCNA_00481at 497.378 kb on - strand, within CCNA_00481at 497.378 kb on - strand, within CCNA_00481at 497.566 kb on + strand, within CCNA_00481at 497.569 kb on - strand, within CCNA_00481at 497.582 kb on - strandat 497.592 kb on + strandat 497.595 kb on - strandat 497.608 kb on + strandat 497.612 kb on + strandat 497.616 kb on - strandat 497.703 kb on - strandat 497.721 kb on + strand, within CCNA_00482at 497.734 kb on + strand, within CCNA_00482at 497.822 kb on + strand, within CCNA_00482at 497.831 kb on + strand, within CCNA_00482at 497.854 kb on - strand, within CCNA_00482at 497.854 kb on - strand, within CCNA_00482at 497.856 kb on + strand, within CCNA_00482at 497.890 kb on + strand, within CCNA_00482at 497.900 kb on + strand, within CCNA_00482at 497.907 kb on + strand, within CCNA_00482at 497.932 kb on + strand, within CCNA_00482at 497.950 kb on - strand, within CCNA_00482at 498.021 kb on - strand, within CCNA_00482at 498.036 kb on - strand, within CCNA_00482at 498.036 kb on - strand, within CCNA_00482at 498.083 kb on + strand, within CCNA_00482at 498.083 kb on + strand, within CCNA_00482at 498.116 kb on + strand, within CCNA_00482at 498.116 kb on - strand, within CCNA_00482at 498.123 kb on + strand, within CCNA_00482at 498.131 kb on - strand, within CCNA_00482at 498.131 kb on - strand, within CCNA_00482at 498.194 kb on + strand, within CCNA_00482at 498.202 kb on - strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.215 kb on + strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.223 kb on - strand, within CCNA_00482at 498.230 kb on + strand, within CCNA_00482at 498.238 kb on - strand, within CCNA_00482at 498.247 kb on + strand, within CCNA_00482at 498.253 kb on - strand, within CCNA_00482at 498.253 kb on - strand, within CCNA_00482at 498.255 kb on + strand, within CCNA_00482at 498.281 kb on + strand, within CCNA_00482at 498.290 kb on + strand, within CCNA_00482at 498.290 kb on + strand, within CCNA_00482at 498.361 kb on + strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.389 kb on + strand, within CCNA_00482at 498.397 kb on - strand, within CCNA_00482at 498.397 kb on - strand, within CCNA_00482at 498.418 kb on - strand, within CCNA_00482at 498.418 kb on - strand, within CCNA_00482at 498.439 kb on + strand, within CCNA_00482at 498.480 kb on + strand, within CCNA_00482at 498.550 kb on + strand, within CCNA_00482at 498.555 kb on + strand, within CCNA_00482at 498.558 kb on + strand, within CCNA_00482at 498.558 kb on + strand, within CCNA_00482at 498.558 kb on - strand, within CCNA_00482at 498.558 kb on - strand, within CCNA_00482at 498.572 kb on + strand, within CCNA_00482at 498.584 kb on + strand, within CCNA_00482at 498.587 kb on - strand, within CCNA_00482

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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496,363 - CCNA_00480 0.49 -1.0
496,364 + CCNA_00480 0.49 +0.2
496,417 + CCNA_00480 0.53 +0.9
496,417 + CCNA_00480 0.53 +0.7
496,425 - CCNA_00480 0.54 -0.1
496,425 - CCNA_00480 0.54 +1.0
496,453 + CCNA_00480 0.56 +0.2
496,453 + CCNA_00480 0.56 -0.3
496,453 + CCNA_00480 0.56 -2.6
496,461 - CCNA_00480 0.57 -0.7
496,461 - CCNA_00480 0.57 -2.5
496,461 - CCNA_00480 0.57 -0.5
496,461 - CCNA_00480 0.57 +0.4
496,461 - CCNA_00480 0.57 +2.0
496,461 - CCNA_00480 0.57 -0.7
496,463 + CCNA_00480 0.57 -0.9
496,516 - CCNA_00480 0.61 -0.2
496,529 + CCNA_00480 0.62 +0.5
496,536 - CCNA_00480 0.63 +2.6
496,583 - CCNA_00480 0.66 +0.9
496,585 + CCNA_00480 0.66 -0.5
496,585 + CCNA_00480 0.66 -0.0
496,585 + CCNA_00480 0.66 -1.1
496,588 - CCNA_00480 0.67 +0.1
496,593 - CCNA_00480 0.67 -0.1
496,617 - CCNA_00480 0.69 +0.0
496,623 + CCNA_00480 0.69 +0.1
496,651 - CCNA_00480 0.71 +0.4
496,725 - CCNA_00480 0.77 +0.1
496,726 - CCNA_00480 0.77 -3.2
496,728 + CCNA_00480 0.77 +0.2
496,796 - CCNA_00480 0.83 +1.5
496,808 + CCNA_00480 0.83 -0.4
496,821 - CCNA_00480 0.84 +0.8
496,842 + CCNA_00480 0.86 -0.2
496,842 + CCNA_00480 0.86 +0.3
496,842 + CCNA_00480 0.86 +0.2
496,842 + CCNA_00480 0.86 -0.8
496,842 + CCNA_00480 0.86 +0.2
496,850 - CCNA_00480 0.87 -1.5
496,850 - CCNA_00480 0.87 -0.3
496,850 - CCNA_00480 0.87 -0.4
496,850 - CCNA_00480 0.87 -1.2
496,867 + CCNA_00480 0.88 +0.5
496,885 - CCNA_00480 0.89 -0.1
496,889 + CCNA_00480 0.90 -0.2
496,935 + -1.3
496,941 + +0.3
496,961 + -0.0
496,961 + -2.4
496,961 + -0.8
496,969 - -0.9
496,981 + -1.6
496,986 + +0.0
497,033 + +0.3
497,033 + -0.3
497,033 + -1.8
497,041 - -0.6
497,041 - -3.2
497,041 - -0.3
497,041 - +0.8
497,041 - +0.1
497,041 - +0.2
497,060 - +0.0
497,108 - +1.2
497,140 - -0.2
497,145 + +0.8
497,153 - -0.5
497,153 - +0.1
497,177 + +1.7
497,177 + +1.2
497,177 + -0.6
497,177 + -0.1
497,177 + -1.2
497,185 - +0.0
497,190 - -0.5
497,201 + +0.2
497,219 + +0.5
497,227 - -1.1
497,255 - -1.6
497,370 + +1.0
497,370 + +0.2
497,370 + -0.5
497,370 + -3.3
497,370 + -0.1
497,378 - CCNA_00481 0.11 -1.3
497,378 - CCNA_00481 0.11 -1.9
497,378 - CCNA_00481 0.11 +0.8
497,378 - CCNA_00481 0.11 -1.3
497,378 - CCNA_00481 0.11 -1.0
497,566 + CCNA_00481 0.87 -0.2
497,569 - CCNA_00481 0.88 +0.4
497,582 - +0.5
497,592 + +0.7
497,595 - +1.1
497,608 + +0.2
497,612 + -0.3
497,616 - -1.1
497,703 - -0.3
497,721 + CCNA_00482 0.11 +0.1
497,734 + CCNA_00482 0.12 -1.4
497,822 + CCNA_00482 0.19 -0.4
497,831 + CCNA_00482 0.19 +0.5
497,854 - CCNA_00482 0.21 -1.8
497,854 - CCNA_00482 0.21 +0.3
497,856 + CCNA_00482 0.21 +0.2
497,890 + CCNA_00482 0.24 +1.1
497,900 + CCNA_00482 0.25 +0.3
497,907 + CCNA_00482 0.25 +3.2
497,932 + CCNA_00482 0.27 -1.0
497,950 - CCNA_00482 0.29 -0.5
498,021 - CCNA_00482 0.34 +0.5
498,036 - CCNA_00482 0.36 -0.5
498,036 - CCNA_00482 0.36 -0.9
498,083 + CCNA_00482 0.39 +0.3
498,083 + CCNA_00482 0.39 -0.5
498,116 + CCNA_00482 0.42 +0.6
498,116 - CCNA_00482 0.42 -0.7
498,123 + CCNA_00482 0.42 -3.8
498,131 - CCNA_00482 0.43 +0.4
498,131 - CCNA_00482 0.43 +0.1
498,194 + CCNA_00482 0.48 +0.3
498,202 - CCNA_00482 0.49 +1.0
498,215 + CCNA_00482 0.50 -0.6
498,215 + CCNA_00482 0.50 -0.2
498,215 + CCNA_00482 0.50 +0.3
498,215 + CCNA_00482 0.50 -0.1
498,215 + CCNA_00482 0.50 +0.3
498,215 + CCNA_00482 0.50 -0.3
498,223 - CCNA_00482 0.50 -0.6
498,223 - CCNA_00482 0.50 +0.1
498,223 - CCNA_00482 0.50 +0.6
498,223 - CCNA_00482 0.50 -0.3
498,223 - CCNA_00482 0.50 +2.8
498,223 - CCNA_00482 0.50 -1.0
498,223 - CCNA_00482 0.50 +0.2
498,230 + CCNA_00482 0.51 +0.3
498,238 - CCNA_00482 0.51 -0.1
498,247 + CCNA_00482 0.52 +0.0
498,253 - CCNA_00482 0.53 +0.4
498,253 - CCNA_00482 0.53 -1.1
498,255 + CCNA_00482 0.53 +0.0
498,281 + CCNA_00482 0.55 +0.1
498,290 + CCNA_00482 0.56 +0.3
498,290 + CCNA_00482 0.56 -0.1
498,361 + CCNA_00482 0.61 -1.0
498,389 + CCNA_00482 0.63 -0.3
498,389 + CCNA_00482 0.63 +0.3
498,397 - CCNA_00482 0.64 +0.2
498,397 - CCNA_00482 0.64 +0.4
498,418 - CCNA_00482 0.66 -0.1
498,418 - CCNA_00482 0.66 +0.1
498,439 + CCNA_00482 0.67 +1.3
498,480 + CCNA_00482 0.70 -0.7
498,550 + CCNA_00482 0.76 +0.3
498,555 + CCNA_00482 0.76 +0.1
498,558 + CCNA_00482 0.77 +1.0
498,558 + CCNA_00482 0.77 -0.1
498,558 - CCNA_00482 0.77 -0.2
498,558 - CCNA_00482 0.77 -0.6
498,572 + CCNA_00482 0.78 +0.4
498,584 + CCNA_00482 0.79 +1.0
498,587 - CCNA_00482 0.79 +0.3

Or see this region's nucleotide sequence