Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00471

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00470 and CCNA_00471 are separated by 26 nucleotidesCCNA_00471 and CCNA_00472 overlap by 35 nucleotides CCNA_00470: CCNA_00470 - O-antigen polymerase, at 484,789 to 486,132 _00470 CCNA_00471: CCNA_00471 - GDP-L-fucose synthase, at 486,159 to 487,127 _00471 CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169 _00472 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 485.166 kb on - strand, within CCNA_00470at 485.258 kb on - strand, within CCNA_00470at 485.370 kb on + strand, within CCNA_00470at 485.401 kb on + strand, within CCNA_00470at 485.406 kb on + strand, within CCNA_00470at 485.408 kb on + strand, within CCNA_00470at 485.422 kb on + strand, within CCNA_00470at 485.422 kb on + strand, within CCNA_00470at 485.422 kb on + strand, within CCNA_00470at 485.423 kb on + strand, within CCNA_00470at 485.457 kb on + strand, within CCNA_00470at 485.469 kb on + strand, within CCNA_00470at 485.470 kb on - strand, within CCNA_00470at 485.496 kb on - strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.514 kb on - strand, within CCNA_00470at 485.514 kb on - strand, within CCNA_00470at 485.519 kb on + strand, within CCNA_00470at 485.519 kb on + strand, within CCNA_00470at 485.522 kb on - strand, within CCNA_00470at 485.527 kb on - strand, within CCNA_00470at 485.553 kb on + strand, within CCNA_00470at 485.553 kb on + strand, within CCNA_00470at 485.580 kb on - strand, within CCNA_00470at 485.626 kb on + strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.708 kb on + strand, within CCNA_00470at 485.803 kb on - strand, within CCNA_00470at 485.821 kb on - strand, within CCNA_00470at 485.824 kb on - strand, within CCNA_00470at 485.840 kb on + strand, within CCNA_00470at 485.881 kb on - strand, within CCNA_00470at 485.934 kb on - strand, within CCNA_00470at 486.099 kb on - strandat 486.177 kb on - strandat 486.177 kb on - strandat 486.242 kb on + strandat 486.242 kb on + strandat 486.250 kb on - strandat 486.255 kb on + strandat 486.255 kb on + strandat 486.315 kb on + strand, within CCNA_00471at 486.323 kb on - strand, within CCNA_00471at 486.323 kb on - strand, within CCNA_00471at 486.334 kb on + strand, within CCNA_00471at 486.351 kb on - strand, within CCNA_00471at 486.353 kb on - strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.386 kb on - strand, within CCNA_00471at 486.475 kb on + strand, within CCNA_00471at 486.492 kb on - strand, within CCNA_00471at 486.509 kb on - strand, within CCNA_00471at 486.528 kb on + strand, within CCNA_00471at 486.531 kb on - strand, within CCNA_00471at 486.536 kb on - strand, within CCNA_00471at 486.536 kb on - strand, within CCNA_00471at 486.541 kb on - strand, within CCNA_00471at 486.577 kb on + strand, within CCNA_00471at 486.599 kb on - strand, within CCNA_00471at 486.609 kb on - strand, within CCNA_00471at 486.626 kb on - strand, within CCNA_00471at 486.634 kb on - strand, within CCNA_00471at 486.636 kb on + strand, within CCNA_00471at 486.636 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.644 kb on - strand, within CCNA_00471at 486.644 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.647 kb on + strand, within CCNA_00471at 486.655 kb on - strand, within CCNA_00471at 486.693 kb on + strand, within CCNA_00471at 486.700 kb on - strand, within CCNA_00471at 486.700 kb on - strand, within CCNA_00471at 486.711 kb on - strand, within CCNA_00471at 486.716 kb on - strand, within CCNA_00471at 486.751 kb on - strand, within CCNA_00471at 486.762 kb on - strand, within CCNA_00471at 486.771 kb on + strand, within CCNA_00471at 486.774 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.790 kb on + strand, within CCNA_00471at 486.790 kb on + strand, within CCNA_00471at 486.798 kb on - strand, within CCNA_00471at 486.826 kb on + strand, within CCNA_00471at 486.845 kb on - strand, within CCNA_00471at 486.888 kb on - strand, within CCNA_00471at 486.888 kb on - strand, within CCNA_00471at 486.895 kb on - strand, within CCNA_00471at 486.898 kb on + strand, within CCNA_00471at 486.969 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471at 487.028 kb on - strand, within CCNA_00471at 487.038 kb on - strandat 487.058 kb on + strandat 487.065 kb on - strandat 487.101 kb on - strandat 487.132 kb on - strandat 487.154 kb on + strandat 487.154 kb on + strandat 487.154 kb on + strandat 487.154 kb on + strandat 487.157 kb on - strandat 487.157 kb on - strandat 487.157 kb on - strandat 487.159 kb on + strandat 487.162 kb on - strandat 487.164 kb on + strandat 487.172 kb on - strandat 487.207 kb on - strand, within CCNA_00472at 487.207 kb on - strand, within CCNA_00472at 487.207 kb on - strand, within CCNA_00472at 487.207 kb on - strand, within CCNA_00472at 487.217 kb on + strand, within CCNA_00472at 487.245 kb on + strand, within CCNA_00472at 487.245 kb on + strand, within CCNA_00472at 487.253 kb on - strand, within CCNA_00472at 487.266 kb on - strand, within CCNA_00472at 487.273 kb on - strand, within CCNA_00472at 487.309 kb on - strand, within CCNA_00472at 487.323 kb on + strand, within CCNA_00472at 487.407 kb on - strand, within CCNA_00472at 487.407 kb on - strand, within CCNA_00472at 487.442 kb on - strand, within CCNA_00472at 487.495 kb on - strand, within CCNA_00472at 487.495 kb on - strand, within CCNA_00472at 487.503 kb on + strand, within CCNA_00472at 487.510 kb on - strand, within CCNA_00472at 487.513 kb on + strand, within CCNA_00472at 487.516 kb on - strand, within CCNA_00472at 487.523 kb on - strand, within CCNA_00472at 487.528 kb on + strand, within CCNA_00472at 487.561 kb on - strand, within CCNA_00472at 487.603 kb on - strand, within CCNA_00472at 487.635 kb on - strand, within CCNA_00472at 487.653 kb on + strand, within CCNA_00472at 487.663 kb on - strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.682 kb on + strand, within CCNA_00472at 487.683 kb on + strand, within CCNA_00472at 487.715 kb on - strand, within CCNA_00472at 487.728 kb on + strand, within CCNA_00472at 487.729 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.747 kb on - strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.752 kb on - strand, within CCNA_00472at 487.765 kb on - strand, within CCNA_00472at 487.805 kb on - strand, within CCNA_00472at 487.808 kb on + strand, within CCNA_00472at 487.829 kb on + strand, within CCNA_00472at 487.837 kb on - strand, within CCNA_00472at 487.871 kb on - strand, within CCNA_00472at 487.875 kb on + strand, within CCNA_00472at 487.881 kb on - strand, within CCNA_00472at 487.893 kb on - strand, within CCNA_00472at 487.907 kb on - strand, within CCNA_00472at 487.975 kb on - strand, within CCNA_00472at 487.989 kb on + strand, within CCNA_00472at 487.997 kb on - strand, within CCNA_00472at 488.031 kb on - strand, within CCNA_00472at 488.033 kb on + strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.070 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.075 kb on - strandat 488.078 kb on + strandat 488.078 kb on - strandat 488.078 kb on - strandat 488.078 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.102 kb on - strandat 488.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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485,166 - CCNA_00470 0.28 +0.3
485,258 - CCNA_00470 0.35 +0.1
485,370 + CCNA_00470 0.43 -0.1
485,401 + CCNA_00470 0.46 +0.7
485,406 + CCNA_00470 0.46 +0.5
485,408 + CCNA_00470 0.46 +0.5
485,422 + CCNA_00470 0.47 +0.8
485,422 + CCNA_00470 0.47 -0.1
485,422 + CCNA_00470 0.47 +0.8
485,423 + CCNA_00470 0.47 -0.4
485,457 + CCNA_00470 0.50 +0.9
485,469 + CCNA_00470 0.51 -0.2
485,470 - CCNA_00470 0.51 +1.6
485,496 - CCNA_00470 0.53 -0.3
485,504 + CCNA_00470 0.53 -0.3
485,504 + CCNA_00470 0.53 +2.8
485,504 + CCNA_00470 0.53 +0.5
485,506 + CCNA_00470 0.53 +1.2
485,506 + CCNA_00470 0.53 +0.0
485,512 - CCNA_00470 0.54 +1.5
485,512 - CCNA_00470 0.54 +0.8
485,512 - CCNA_00470 0.54 +0.0
485,514 - CCNA_00470 0.54 -0.7
485,514 - CCNA_00470 0.54 +0.5
485,519 + CCNA_00470 0.54 -1.3
485,519 + CCNA_00470 0.54 -0.5
485,522 - CCNA_00470 0.55 -0.8
485,527 - CCNA_00470 0.55 -0.4
485,553 + CCNA_00470 0.57 -0.8
485,553 + CCNA_00470 0.57 +0.6
485,580 - CCNA_00470 0.59 +0.7
485,626 + CCNA_00470 0.62 -0.5
485,673 - CCNA_00470 0.66 +0.2
485,708 + CCNA_00470 0.68 -0.3
485,803 - CCNA_00470 0.75 -0.2
485,821 - CCNA_00470 0.77 +0.4
485,824 - CCNA_00470 0.77 +0.7
485,840 + CCNA_00470 0.78 -0.6
485,881 - CCNA_00470 0.81 +0.6
485,934 - CCNA_00470 0.85 +0.8
486,099 - +1.6
486,177 - -1.2
486,177 - +0.3
486,242 + -0.1
486,242 + +0.1
486,250 - +0.1
486,255 + +0.1
486,255 + +1.7
486,315 + CCNA_00471 0.16 -0.9
486,323 - CCNA_00471 0.17 +0.2
486,323 - CCNA_00471 0.17 +0.5
486,334 + CCNA_00471 0.18 -0.6
486,351 - CCNA_00471 0.20 +1.8
486,353 - CCNA_00471 0.20 -2.3
486,376 + CCNA_00471 0.22 -0.1
486,386 - CCNA_00471 0.23 -0.6
486,475 + CCNA_00471 0.33 +0.8
486,492 - CCNA_00471 0.34 +0.8
486,509 - CCNA_00471 0.36 +0.7
486,528 + CCNA_00471 0.38 +0.7
486,531 - CCNA_00471 0.38 -0.5
486,536 - CCNA_00471 0.39 +0.4
486,536 - CCNA_00471 0.39 +0.0
486,541 - CCNA_00471 0.39 +0.6
486,577 + CCNA_00471 0.43 -2.6
486,599 - CCNA_00471 0.45 +0.5
486,609 - CCNA_00471 0.46 +1.0
486,626 - CCNA_00471 0.48 +0.9
486,634 - CCNA_00471 0.49 +0.3
486,636 + CCNA_00471 0.49 +0.0
486,636 + CCNA_00471 0.49 -0.3
486,637 + CCNA_00471 0.49 +0.5
486,637 + CCNA_00471 0.49 +0.8
486,637 + CCNA_00471 0.49 -0.0
486,644 - CCNA_00471 0.50 -0.3
486,644 - CCNA_00471 0.50 +0.5
486,645 - CCNA_00471 0.50 -1.1
486,645 - CCNA_00471 0.50 +1.2
486,645 - CCNA_00471 0.50 +0.3
486,645 - CCNA_00471 0.50 -0.2
486,647 + CCNA_00471 0.50 +0.4
486,655 - CCNA_00471 0.51 +0.5
486,693 + CCNA_00471 0.55 +0.1
486,700 - CCNA_00471 0.56 -2.5
486,700 - CCNA_00471 0.56 +0.6
486,711 - CCNA_00471 0.57 -0.1
486,716 - CCNA_00471 0.57 +0.1
486,751 - CCNA_00471 0.61 +0.2
486,762 - CCNA_00471 0.62 -0.6
486,771 + CCNA_00471 0.63 +1.5
486,774 - CCNA_00471 0.63 +0.7
486,779 - CCNA_00471 0.64 +0.6
486,790 + CCNA_00471 0.65 -1.3
486,790 + CCNA_00471 0.65 +1.1
486,798 - CCNA_00471 0.66 +0.5
486,826 + CCNA_00471 0.69 +0.4
486,845 - CCNA_00471 0.71 +0.2
486,888 - CCNA_00471 0.75 +0.1
486,888 - CCNA_00471 0.75 +0.5
486,895 - CCNA_00471 0.76 +2.2
486,898 + CCNA_00471 0.76 +0.1
486,969 - CCNA_00471 0.84 -0.7
486,971 - CCNA_00471 0.84 +1.4
487,028 - CCNA_00471 0.90 -1.4
487,038 - -0.1
487,058 + -0.9
487,065 - +0.6
487,101 - +0.4
487,132 - +0.3
487,154 + -0.3
487,154 + -0.0
487,154 + -0.7
487,154 + +0.8
487,157 - -0.4
487,157 - +0.8
487,157 - -0.1
487,159 + +0.0
487,162 - +1.0
487,164 + +0.3
487,172 - -0.4
487,207 - CCNA_00472 0.11 -0.5
487,207 - CCNA_00472 0.11 +0.7
487,207 - CCNA_00472 0.11 +1.6
487,207 - CCNA_00472 0.11 +1.2
487,217 + CCNA_00472 0.12 +0.3
487,245 + CCNA_00472 0.14 -1.2
487,245 + CCNA_00472 0.14 +1.6
487,253 - CCNA_00472 0.15 +0.4
487,266 - CCNA_00472 0.16 +0.6
487,273 - CCNA_00472 0.17 +0.8
487,309 - CCNA_00472 0.20 +0.4
487,323 + CCNA_00472 0.21 -0.4
487,407 - CCNA_00472 0.29 -1.0
487,407 - CCNA_00472 0.29 +0.7
487,442 - CCNA_00472 0.32 +0.4
487,495 - CCNA_00472 0.37 +0.5
487,495 - CCNA_00472 0.37 +1.0
487,503 + CCNA_00472 0.38 +0.0
487,510 - CCNA_00472 0.39 -0.2
487,513 + CCNA_00472 0.39 +0.0
487,516 - CCNA_00472 0.39 -0.5
487,523 - CCNA_00472 0.40 +1.7
487,528 + CCNA_00472 0.40 -0.3
487,561 - CCNA_00472 0.43 -0.3
487,603 - CCNA_00472 0.47 +0.0
487,635 - CCNA_00472 0.50 +0.7
487,653 + CCNA_00472 0.52 +0.2
487,663 - CCNA_00472 0.53 +0.5
487,664 + CCNA_00472 0.53 +0.1
487,664 + CCNA_00472 0.53 -0.1
487,664 + CCNA_00472 0.53 -0.8
487,664 + CCNA_00472 0.53 -1.1
487,664 + CCNA_00472 0.53 +1.1
487,664 + CCNA_00472 0.53 +0.0
487,664 + CCNA_00472 0.53 -1.1
487,672 - CCNA_00472 0.54 +1.4
487,672 - CCNA_00472 0.54 +0.9
487,672 - CCNA_00472 0.54 +0.0
487,672 - CCNA_00472 0.54 -0.9
487,682 + CCNA_00472 0.55 +1.0
487,683 + CCNA_00472 0.55 +0.0
487,715 - CCNA_00472 0.58 +0.9
487,728 + CCNA_00472 0.59 +0.2
487,729 + CCNA_00472 0.59 +0.5
487,739 + CCNA_00472 0.60 -0.4
487,739 + CCNA_00472 0.60 -0.8
487,739 + CCNA_00472 0.60 +1.5
487,747 - CCNA_00472 0.61 -0.2
487,749 + CCNA_00472 0.61 -0.0
487,749 + CCNA_00472 0.61 -0.9
487,752 - CCNA_00472 0.61 +0.6
487,765 - CCNA_00472 0.62 +1.2
487,805 - CCNA_00472 0.66 +0.3
487,808 + CCNA_00472 0.66 -1.4
487,829 + CCNA_00472 0.68 +0.4
487,837 - CCNA_00472 0.69 -0.7
487,871 - CCNA_00472 0.72 +0.9
487,875 + CCNA_00472 0.73 -1.6
487,881 - CCNA_00472 0.73 +0.5
487,893 - CCNA_00472 0.74 +1.4
487,907 - CCNA_00472 0.76 +1.1
487,975 - CCNA_00472 0.82 +0.7
487,989 + CCNA_00472 0.83 -1.6
487,997 - CCNA_00472 0.84 +0.3
488,031 - CCNA_00472 0.87 +0.5
488,033 + CCNA_00472 0.87 +0.8
488,041 - CCNA_00472 0.88 +0.6
488,041 - CCNA_00472 0.88 +0.0
488,055 + CCNA_00472 0.89 -0.9
488,055 + CCNA_00472 0.89 +1.1
488,063 - +0.7
488,063 - +0.1
488,063 - +0.3
488,063 - +0.4
488,070 + -1.6
488,070 + -0.3
488,070 + -0.1
488,070 + -1.8
488,070 + -1.1
488,072 + -0.8
488,072 + +0.0
488,072 + +0.2
488,072 + -0.6
488,075 - -0.3
488,078 + -0.6
488,078 - +0.5
488,078 - -0.4
488,078 - +0.8
488,080 - -0.7
488,080 - -0.3
488,080 - +0.1
488,102 - -0.1
488,102 - -0.4

Or see this region's nucleotide sequence