Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00375

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00373 and CCNA_00374 are separated by 5 nucleotidesCCNA_00374 and CCNA_00375 are separated by 421 nucleotidesCCNA_00375 and CCNA_00376 are separated by 70 nucleotidesCCNA_00376 and CCNA_00377 are separated by 114 nucleotides CCNA_00373: CCNA_00373 - ATP synthase A chain, at 389,030 to 389,791 _00373 CCNA_00374: CCNA_00374 - putative ATP synthase protein I, at 389,797 to 390,177 _00374 CCNA_00375: CCNA_00375 - hypothetical protein, at 390,599 to 390,988 _00375 CCNA_00376: CCNA_00376 - putative membrane spanning protein, at 391,059 to 391,838 _00376 CCNA_00377: CCNA_00377 - chromosome partition protein Smc, at 391,953 to 395,396 _00377 Position (kb) 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 390.175 kb on - strandat 390.175 kb on - strandat 390.244 kb on - strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.274 kb on + strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.282 kb on - strandat 390.352 kb on - strandat 390.376 kb on + strandat 390.416 kb on + strandat 390.416 kb on + strandat 390.434 kb on - strandat 390.490 kb on + strandat 390.491 kb on + strandat 390.491 kb on + strandat 390.491 kb on - strandat 390.516 kb on - strandat 390.577 kb on + strandat 390.585 kb on - strandat 390.676 kb on + strand, within CCNA_00375at 390.676 kb on + strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.684 kb on - strand, within CCNA_00375at 390.725 kb on + strand, within CCNA_00375at 390.733 kb on - strand, within CCNA_00375at 390.742 kb on + strand, within CCNA_00375at 390.742 kb on + strand, within CCNA_00375at 390.742 kb on + strand, within CCNA_00375at 390.750 kb on - strand, within CCNA_00375at 390.750 kb on - strand, within CCNA_00375at 390.750 kb on - strand, within CCNA_00375at 390.790 kb on + strand, within CCNA_00375at 390.797 kb on + strand, within CCNA_00375at 390.823 kb on - strand, within CCNA_00375at 390.840 kb on + strand, within CCNA_00375at 390.858 kb on - strand, within CCNA_00375at 390.897 kb on + strand, within CCNA_00375at 390.900 kb on - strand, within CCNA_00375at 390.915 kb on - strand, within CCNA_00375at 390.932 kb on - strand, within CCNA_00375at 390.936 kb on - strand, within CCNA_00375at 390.936 kb on - strand, within CCNA_00375at 390.943 kb on + strand, within CCNA_00375at 390.951 kb on - strandat 390.960 kb on + strandat 390.965 kb on - strandat 390.984 kb on + strandat 391.003 kb on + strandat 391.003 kb on + strandat 391.011 kb on - strandat 391.064 kb on - strandat 391.109 kb on - strandat 391.114 kb on - strandat 391.124 kb on - strandat 391.143 kb on - strand, within CCNA_00376at 391.199 kb on - strand, within CCNA_00376at 391.215 kb on + strand, within CCNA_00376at 391.232 kb on + strand, within CCNA_00376at 391.240 kb on - strand, within CCNA_00376at 391.246 kb on + strand, within CCNA_00376at 391.329 kb on - strand, within CCNA_00376at 391.398 kb on - strand, within CCNA_00376at 391.443 kb on - strand, within CCNA_00376at 391.482 kb on + strand, within CCNA_00376at 391.534 kb on + strand, within CCNA_00376at 391.535 kb on - strand, within CCNA_00376at 391.540 kb on - strand, within CCNA_00376at 391.554 kb on - strand, within CCNA_00376at 391.559 kb on + strand, within CCNA_00376at 391.572 kb on + strand, within CCNA_00376at 391.588 kb on + strand, within CCNA_00376at 391.597 kb on - strand, within CCNA_00376at 391.598 kb on + strand, within CCNA_00376at 391.617 kb on - strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.624 kb on + strand, within CCNA_00376at 391.627 kb on - strand, within CCNA_00376at 391.629 kb on + strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.632 kb on - strand, within CCNA_00376at 391.641 kb on - strand, within CCNA_00376at 391.663 kb on + strand, within CCNA_00376at 391.668 kb on + strand, within CCNA_00376at 391.711 kb on + strand, within CCNA_00376at 391.716 kb on + strand, within CCNA_00376at 391.730 kb on + strand, within CCNA_00376at 391.783 kb on + strandat 391.805 kb on + strandat 391.832 kb on - strandat 391.980 kb on + strandat 391.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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390,175 - +1.6
390,175 - -0.3
390,244 - -1.5
390,274 + +0.2
390,274 + +1.0
390,274 + -1.5
390,274 + -0.3
390,274 + -0.7
390,274 + -1.3
390,274 + -1.5
390,282 - -0.8
390,282 - -0.3
390,282 - +0.6
390,282 - +1.0
390,282 - +0.9
390,282 - -0.1
390,352 - -0.2
390,376 + -1.3
390,416 + +1.9
390,416 + -1.1
390,434 - -0.8
390,490 + -1.0
390,491 + -0.6
390,491 + +0.8
390,491 - -1.7
390,516 - -0.2
390,577 + +0.6
390,585 - -2.2
390,676 + CCNA_00375 0.20 -1.5
390,676 + CCNA_00375 0.20 +0.1
390,684 - CCNA_00375 0.22 -0.7
390,684 - CCNA_00375 0.22 -0.4
390,684 - CCNA_00375 0.22 -0.8
390,684 - CCNA_00375 0.22 -0.7
390,684 - CCNA_00375 0.22 +0.2
390,684 - CCNA_00375 0.22 +0.2
390,684 - CCNA_00375 0.22 -0.6
390,725 + CCNA_00375 0.32 -2.4
390,733 - CCNA_00375 0.34 -0.0
390,742 + CCNA_00375 0.37 -0.7
390,742 + CCNA_00375 0.37 +0.1
390,742 + CCNA_00375 0.37 +0.6
390,750 - CCNA_00375 0.39 -2.6
390,750 - CCNA_00375 0.39 -1.2
390,750 - CCNA_00375 0.39 +0.8
390,790 + CCNA_00375 0.49 -0.4
390,797 + CCNA_00375 0.51 +0.3
390,823 - CCNA_00375 0.57 +0.0
390,840 + CCNA_00375 0.62 -0.6
390,858 - CCNA_00375 0.66 +1.2
390,897 + CCNA_00375 0.76 -0.1
390,900 - CCNA_00375 0.77 -1.7
390,915 - CCNA_00375 0.81 -2.8
390,932 - CCNA_00375 0.85 -1.8
390,936 - CCNA_00375 0.86 -0.2
390,936 - CCNA_00375 0.86 -1.5
390,943 + CCNA_00375 0.88 -2.0
390,951 - -2.8
390,960 + +0.1
390,965 - -0.5
390,984 + +0.4
391,003 + +0.3
391,003 + +0.2
391,011 - -0.8
391,064 - -0.1
391,109 - -0.7
391,114 - +0.4
391,124 - -0.0
391,143 - CCNA_00376 0.11 -1.8
391,199 - CCNA_00376 0.18 -1.1
391,215 + CCNA_00376 0.20 +0.7
391,232 + CCNA_00376 0.22 +0.5
391,240 - CCNA_00376 0.23 -1.1
391,246 + CCNA_00376 0.24 +0.4
391,329 - CCNA_00376 0.35 -0.1
391,398 - CCNA_00376 0.43 +1.0
391,443 - CCNA_00376 0.49 -1.0
391,482 + CCNA_00376 0.54 +0.5
391,534 + CCNA_00376 0.61 +0.4
391,535 - CCNA_00376 0.61 +0.5
391,540 - CCNA_00376 0.62 +0.6
391,554 - CCNA_00376 0.63 -0.6
391,559 + CCNA_00376 0.64 +0.2
391,572 + CCNA_00376 0.66 -0.1
391,588 + CCNA_00376 0.68 +0.7
391,597 - CCNA_00376 0.69 -2.6
391,598 + CCNA_00376 0.69 +0.7
391,617 - CCNA_00376 0.72 +0.3
391,624 + CCNA_00376 0.72 -0.0
391,624 + CCNA_00376 0.72 -0.2
391,624 + CCNA_00376 0.72 +0.4
391,624 + CCNA_00376 0.72 +0.2
391,627 - CCNA_00376 0.73 -1.0
391,629 + CCNA_00376 0.73 +0.1
391,632 - CCNA_00376 0.73 +0.5
391,632 - CCNA_00376 0.73 +0.5
391,632 - CCNA_00376 0.73 -1.0
391,632 - CCNA_00376 0.73 -0.3
391,632 - CCNA_00376 0.73 -1.0
391,632 - CCNA_00376 0.73 -1.1
391,632 - CCNA_00376 0.73 -0.7
391,632 - CCNA_00376 0.73 -0.2
391,632 - CCNA_00376 0.73 -0.3
391,641 - CCNA_00376 0.75 -0.5
391,663 + CCNA_00376 0.77 -0.7
391,668 + CCNA_00376 0.78 +0.5
391,711 + CCNA_00376 0.84 -0.1
391,716 + CCNA_00376 0.84 +0.0
391,730 + CCNA_00376 0.86 +0.5
391,783 + +0.0
391,805 + -0.0
391,832 - +0.9
391,980 + -0.5
391,988 - -0.8

Or see this region's nucleotide sequence