Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00225

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00224 and CCNA_00225 are separated by 330 nucleotidesCCNA_00225 and CCNA_00226 are separated by 100 nucleotidesCCNA_00226 and CCNA_00227 are separated by 57 nucleotidesCCNA_00227 and CCNA_00228 overlap by 1 nucleotides CCNA_00224: CCNA_00224 - TonB-dependent receptor protein, at 240,648 to 242,693 _00224 CCNA_00225: CCNA_00225 - hypothetical protein, at 243,024 to 243,056 _00225 CCNA_00226: CCNA_00226 - hypothetical protein, at 243,157 to 243,432 _00226 CCNA_00227: CCNA_00227 - methyltransferase, at 243,490 to 244,056 _00227 CCNA_00228: CCNA_00228 - putative membrane spanning protein, at 244,056 to 244,670 _00228 Position (kb) 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 242.025 kb on - strand, within CCNA_00224at 242.092 kb on + strand, within CCNA_00224at 242.095 kb on - strand, within CCNA_00224at 242.122 kb on + strand, within CCNA_00224at 242.130 kb on - strand, within CCNA_00224at 242.172 kb on - strand, within CCNA_00224at 242.216 kb on + strand, within CCNA_00224at 242.216 kb on + strand, within CCNA_00224at 242.216 kb on + strand, within CCNA_00224at 242.224 kb on - strand, within CCNA_00224at 242.224 kb on - strand, within CCNA_00224at 242.229 kb on + strand, within CCNA_00224at 242.285 kb on + strand, within CCNA_00224at 242.285 kb on - strand, within CCNA_00224at 242.299 kb on - strand, within CCNA_00224at 242.299 kb on - strand, within CCNA_00224at 242.343 kb on + strand, within CCNA_00224at 242.365 kb on + strand, within CCNA_00224at 242.390 kb on - strand, within CCNA_00224at 242.409 kb on + strand, within CCNA_00224at 242.428 kb on - strand, within CCNA_00224at 242.438 kb on + strand, within CCNA_00224at 242.445 kb on + strand, within CCNA_00224at 242.473 kb on - strand, within CCNA_00224at 242.481 kb on + strand, within CCNA_00224at 242.489 kb on - strandat 242.489 kb on - strandat 242.489 kb on - strandat 242.527 kb on + strandat 242.527 kb on + strandat 242.527 kb on + strandat 242.535 kb on - strandat 242.535 kb on - strandat 242.535 kb on - strandat 242.585 kb on - strandat 242.587 kb on + strandat 242.643 kb on + strandat 242.643 kb on + strandat 242.667 kb on + strandat 242.687 kb on - strandat 242.699 kb on + strandat 242.701 kb on + strandat 242.709 kb on - strandat 242.715 kb on + strandat 242.715 kb on + strandat 242.715 kb on + strandat 242.715 kb on + strandat 242.892 kb on + strandat 242.894 kb on + strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.900 kb on - strandat 242.942 kb on + strandat 242.965 kb on + strandat 242.971 kb on + strandat 242.973 kb on - strandat 243.010 kb on - strandat 243.015 kb on - strandat 243.051 kb on + strand, within CCNA_00225at 243.057 kb on - strandat 243.083 kb on + strandat 243.091 kb on - strandat 243.116 kb on + strandat 243.154 kb on + strandat 243.162 kb on - strandat 243.162 kb on - strandat 243.172 kb on - strandat 243.177 kb on + strandat 243.198 kb on + strand, within CCNA_00226at 243.198 kb on + strand, within CCNA_00226at 243.198 kb on + strand, within CCNA_00226at 243.206 kb on - strand, within CCNA_00226at 243.206 kb on - strand, within CCNA_00226at 243.213 kb on + strand, within CCNA_00226at 243.275 kb on + strand, within CCNA_00226at 243.288 kb on - strand, within CCNA_00226at 243.304 kb on + strand, within CCNA_00226at 243.305 kb on + strand, within CCNA_00226at 243.324 kb on + strand, within CCNA_00226at 243.379 kb on - strand, within CCNA_00226at 243.408 kb on - strandat 243.449 kb on + strandat 243.460 kb on - strandat 243.462 kb on + strandat 243.495 kb on - strandat 243.544 kb on + strandat 243.644 kb on + strand, within CCNA_00227at 243.658 kb on + strand, within CCNA_00227at 243.705 kb on - strand, within CCNA_00227at 243.718 kb on + strand, within CCNA_00227at 243.726 kb on - strand, within CCNA_00227at 243.737 kb on - strand, within CCNA_00227at 243.737 kb on - strand, within CCNA_00227at 243.867 kb on + strand, within CCNA_00227at 243.977 kb on - strand, within CCNA_00227at 243.977 kb on - strand, within CCNA_00227at 243.979 kb on + strand, within CCNA_00227at 243.983 kb on + strand, within CCNA_00227at 244.016 kb on + strandat 244.016 kb on + strandat 244.016 kb on + strandat 244.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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242,025 - CCNA_00224 0.67 +0.3
242,092 + CCNA_00224 0.71 -0.6
242,095 - CCNA_00224 0.71 +0.5
242,122 + CCNA_00224 0.72 -0.9
242,130 - CCNA_00224 0.72 -0.6
242,172 - CCNA_00224 0.74 -0.0
242,216 + CCNA_00224 0.77 +0.7
242,216 + CCNA_00224 0.77 +0.3
242,216 + CCNA_00224 0.77 -0.2
242,224 - CCNA_00224 0.77 +1.5
242,224 - CCNA_00224 0.77 -0.3
242,229 + CCNA_00224 0.77 -0.7
242,285 + CCNA_00224 0.80 -0.7
242,285 - CCNA_00224 0.80 -0.0
242,299 - CCNA_00224 0.81 +0.4
242,299 - CCNA_00224 0.81 +1.7
242,343 + CCNA_00224 0.83 -0.3
242,365 + CCNA_00224 0.84 +0.4
242,390 - CCNA_00224 0.85 -0.0
242,409 + CCNA_00224 0.86 +0.8
242,428 - CCNA_00224 0.87 -0.4
242,438 + CCNA_00224 0.87 -1.1
242,445 + CCNA_00224 0.88 -0.8
242,473 - CCNA_00224 0.89 +1.4
242,481 + CCNA_00224 0.90 -0.4
242,489 - +0.6
242,489 - -1.5
242,489 - +0.1
242,527 + -0.8
242,527 + -1.2
242,527 + -1.3
242,535 - -0.4
242,535 - -1.1
242,535 - -2.7
242,585 - +0.1
242,587 + -0.7
242,643 + -0.8
242,643 + -0.9
242,667 + -0.9
242,687 - -0.4
242,699 + -0.2
242,701 + +0.5
242,709 - -1.1
242,715 + +1.0
242,715 + -1.3
242,715 + -1.3
242,715 + -0.2
242,892 + -0.6
242,894 + -0.0
242,900 - +0.0
242,900 - -0.1
242,900 - +0.2
242,900 - -1.5
242,900 - +0.2
242,900 - -1.1
242,900 - +0.2
242,900 - -1.9
242,900 - -0.2
242,900 - +0.8
242,900 - -0.1
242,942 + -1.5
242,965 + -0.4
242,971 + -1.9
242,973 - -0.2
243,010 - -0.3
243,015 - -0.1
243,051 + CCNA_00225 0.82 +0.4
243,057 - -0.2
243,083 + +0.1
243,091 - +1.5
243,116 + -0.2
243,154 + +0.3
243,162 - -0.7
243,162 - +1.8
243,172 - +0.7
243,177 + +0.1
243,198 + CCNA_00226 0.15 +0.4
243,198 + CCNA_00226 0.15 +0.1
243,198 + CCNA_00226 0.15 +1.3
243,206 - CCNA_00226 0.18 -0.6
243,206 - CCNA_00226 0.18 +0.5
243,213 + CCNA_00226 0.20 -0.3
243,275 + CCNA_00226 0.43 +0.5
243,288 - CCNA_00226 0.47 -1.4
243,304 + CCNA_00226 0.53 +0.0
243,305 + CCNA_00226 0.54 +0.2
243,324 + CCNA_00226 0.61 -1.1
243,379 - CCNA_00226 0.80 -0.0
243,408 - -0.4
243,449 + -1.2
243,460 - -0.6
243,462 + +0.2
243,495 - -0.1
243,544 + -0.8
243,644 + CCNA_00227 0.27 -0.3
243,658 + CCNA_00227 0.30 -0.1
243,705 - CCNA_00227 0.38 +0.5
243,718 + CCNA_00227 0.40 +0.1
243,726 - CCNA_00227 0.42 -0.7
243,737 - CCNA_00227 0.44 -2.0
243,737 - CCNA_00227 0.44 -1.4
243,867 + CCNA_00227 0.66 -0.6
243,977 - CCNA_00227 0.86 -0.1
243,977 - CCNA_00227 0.86 -1.4
243,979 + CCNA_00227 0.86 +0.5
243,983 + CCNA_00227 0.87 +0.8
244,016 + -0.2
244,016 + -1.5
244,016 + -0.0
244,024 - -0.7

Or see this region's nucleotide sequence