Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00168

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00167 and CCNA_00168 are separated by 84 nucleotidesCCNA_00168 and CCNA_00169 are separated by 577 nucleotides CCNA_00167: CCNA_00167 - metallophosphatase family protein, at 179,311 to 180,120 _00167 CCNA_00168: CCNA_00168 - polysaccharide export protein, at 180,205 to 180,801 _00168 CCNA_00169: CCNA_00169 - hypothetical protein, at 181,379 to 182,917 _00169 Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 179.342 kb on - strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.385 kb on - strandat 179.387 kb on - strandat 179.389 kb on - strandat 179.389 kb on - strandat 179.392 kb on + strand, within CCNA_00167at 179.397 kb on + strand, within CCNA_00167at 179.405 kb on - strand, within CCNA_00167at 179.490 kb on + strand, within CCNA_00167at 179.522 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.549 kb on - strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.587 kb on + strand, within CCNA_00167at 179.595 kb on - strand, within CCNA_00167at 179.624 kb on + strand, within CCNA_00167at 179.624 kb on + strand, within CCNA_00167at 179.625 kb on + strand, within CCNA_00167at 179.646 kb on - strand, within CCNA_00167at 179.656 kb on - strand, within CCNA_00167at 179.664 kb on + strand, within CCNA_00167at 179.683 kb on + strand, within CCNA_00167at 179.683 kb on + strand, within CCNA_00167at 179.685 kb on + strand, within CCNA_00167at 179.691 kb on - strand, within CCNA_00167at 179.732 kb on - strand, within CCNA_00167at 179.734 kb on - strand, within CCNA_00167at 179.744 kb on + strand, within CCNA_00167at 179.751 kb on - strand, within CCNA_00167at 179.751 kb on - strand, within CCNA_00167at 179.752 kb on - strand, within CCNA_00167at 179.787 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.808 kb on + strand, within CCNA_00167at 179.859 kb on - strand, within CCNA_00167at 179.862 kb on + strand, within CCNA_00167at 179.868 kb on + strand, within CCNA_00167at 179.873 kb on + strand, within CCNA_00167at 179.873 kb on + strand, within CCNA_00167at 179.873 kb on + strand, within CCNA_00167at 179.903 kb on + strand, within CCNA_00167at 179.913 kb on + strand, within CCNA_00167at 179.958 kb on + strand, within CCNA_00167at 179.983 kb on - strand, within CCNA_00167at 180.015 kb on + strand, within CCNA_00167at 180.047 kb on - strandat 180.047 kb on - strandat 180.065 kb on + strandat 180.089 kb on - strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.115 kb on + strandat 180.122 kb on - strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.123 kb on - strandat 180.267 kb on + strand, within CCNA_00168at 180.290 kb on + strand, within CCNA_00168at 180.292 kb on - strand, within CCNA_00168at 180.294 kb on + strand, within CCNA_00168at 180.295 kb on + strand, within CCNA_00168at 180.300 kb on + strand, within CCNA_00168at 180.300 kb on + strand, within CCNA_00168at 180.300 kb on + strand, within CCNA_00168at 180.352 kb on + strand, within CCNA_00168at 180.355 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.360 kb on - strand, within CCNA_00168at 180.372 kb on + strand, within CCNA_00168at 180.372 kb on + strand, within CCNA_00168at 180.380 kb on - strand, within CCNA_00168at 180.383 kb on + strand, within CCNA_00168at 180.385 kb on + strand, within CCNA_00168at 180.389 kb on + strand, within CCNA_00168at 180.392 kb on - strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.433 kb on + strand, within CCNA_00168at 180.441 kb on - strand, within CCNA_00168at 180.449 kb on - strand, within CCNA_00168at 180.482 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.492 kb on + strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.500 kb on - strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.505 kb on + strand, within CCNA_00168at 180.513 kb on - strand, within CCNA_00168at 180.516 kb on + strand, within CCNA_00168at 180.524 kb on - strand, within CCNA_00168at 180.539 kb on - strand, within CCNA_00168at 180.586 kb on - strand, within CCNA_00168at 180.588 kb on + strand, within CCNA_00168at 180.603 kb on - strand, within CCNA_00168at 180.631 kb on - strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.637 kb on + strand, within CCNA_00168at 180.645 kb on - strand, within CCNA_00168at 180.734 kb on - strand, within CCNA_00168at 180.746 kb on - strandat 180.746 kb on - strandat 180.746 kb on - strandat 180.781 kb on - strandat 180.854 kb on + strandat 180.872 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.895 kb on - strandat 180.919 kb on + strandat 180.961 kb on - strandat 180.961 kb on - strandat 181.371 kb on - strandat 181.384 kb on + strandat 181.395 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on + strandat 181.403 kb on - strandat 181.418 kb on + strandat 181.426 kb on - strandat 181.445 kb on + strandat 181.445 kb on + strandat 181.445 kb on + strandat 181.507 kb on - strandat 181.536 kb on + strand, within CCNA_00169at 181.540 kb on + strand, within CCNA_00169at 181.549 kb on - strand, within CCNA_00169at 181.549 kb on - strand, within CCNA_00169at 181.555 kb on - strand, within CCNA_00169at 181.590 kb on - strand, within CCNA_00169at 181.654 kb on - strand, within CCNA_00169at 181.677 kb on - strand, within CCNA_00169at 181.683 kb on - strand, within CCNA_00169at 181.685 kb on - strand, within CCNA_00169at 181.690 kb on + strand, within CCNA_00169at 181.712 kb on - strand, within CCNA_00169at 181.753 kb on + strand, within CCNA_00169at 181.753 kb on + strand, within CCNA_00169at 181.753 kb on + strand, within CCNA_00169at 181.758 kb on + strand, within CCNA_00169at 181.761 kb on - strand, within CCNA_00169at 181.765 kb on - strand, within CCNA_00169

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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179,342 - -0.3
179,379 + +0.1
179,379 + -1.5
179,379 + +0.1
179,385 - -0.8
179,387 - -0.2
179,389 - -0.7
179,389 - -0.0
179,392 + CCNA_00167 0.10 +0.5
179,397 + CCNA_00167 0.11 -0.3
179,405 - CCNA_00167 0.12 +0.6
179,490 + CCNA_00167 0.22 +0.2
179,522 + CCNA_00167 0.26 +0.2
179,543 + CCNA_00167 0.29 +0.3
179,543 + CCNA_00167 0.29 -0.4
179,543 + CCNA_00167 0.29 +1.1
179,549 - CCNA_00167 0.29 -0.4
179,551 - CCNA_00167 0.30 -1.4
179,551 - CCNA_00167 0.30 +0.2
179,587 + CCNA_00167 0.34 -0.5
179,595 - CCNA_00167 0.35 +0.3
179,624 + CCNA_00167 0.39 +0.2
179,624 + CCNA_00167 0.39 +0.7
179,625 + CCNA_00167 0.39 -0.2
179,646 - CCNA_00167 0.41 +1.5
179,656 - CCNA_00167 0.43 -0.8
179,664 + CCNA_00167 0.44 +0.4
179,683 + CCNA_00167 0.46 +0.2
179,683 + CCNA_00167 0.46 +2.6
179,685 + CCNA_00167 0.46 +0.1
179,691 - CCNA_00167 0.47 +1.0
179,732 - CCNA_00167 0.52 -1.0
179,734 - CCNA_00167 0.52 -0.2
179,744 + CCNA_00167 0.53 +0.2
179,751 - CCNA_00167 0.54 -1.0
179,751 - CCNA_00167 0.54 -0.6
179,752 - CCNA_00167 0.54 -1.5
179,787 + CCNA_00167 0.59 +0.5
179,798 + CCNA_00167 0.60 +0.3
179,798 + CCNA_00167 0.60 -0.4
179,798 + CCNA_00167 0.60 +1.3
179,798 + CCNA_00167 0.60 +0.1
179,798 + CCNA_00167 0.60 +1.0
179,798 + CCNA_00167 0.60 +1.1
179,798 + CCNA_00167 0.60 +0.9
179,806 - CCNA_00167 0.61 +0.1
179,806 - CCNA_00167 0.61 -1.3
179,806 - CCNA_00167 0.61 -0.4
179,808 + CCNA_00167 0.61 +0.7
179,859 - CCNA_00167 0.68 +0.2
179,862 + CCNA_00167 0.68 +1.4
179,868 + CCNA_00167 0.69 +0.0
179,873 + CCNA_00167 0.69 -2.6
179,873 + CCNA_00167 0.69 +0.1
179,873 + CCNA_00167 0.69 +0.1
179,903 + CCNA_00167 0.73 +0.2
179,913 + CCNA_00167 0.74 -0.0
179,958 + CCNA_00167 0.80 -0.3
179,983 - CCNA_00167 0.83 -1.1
180,015 + CCNA_00167 0.87 +0.9
180,047 - +0.5
180,047 - +0.3
180,065 + +0.2
180,089 - +0.1
180,115 + -0.2
180,115 + +1.4
180,115 + +0.6
180,115 + -0.4
180,122 - -0.7
180,123 - +0.2
180,123 - -0.8
180,123 - +1.5
180,123 - +1.3
180,267 + CCNA_00168 0.10 +0.4
180,290 + CCNA_00168 0.14 +1.5
180,292 - CCNA_00168 0.15 +0.5
180,294 + CCNA_00168 0.15 -0.9
180,295 + CCNA_00168 0.15 +0.3
180,300 + CCNA_00168 0.16 -0.3
180,300 + CCNA_00168 0.16 +0.5
180,300 + CCNA_00168 0.16 +0.2
180,352 + CCNA_00168 0.25 +0.6
180,355 - CCNA_00168 0.25 +1.2
180,360 - CCNA_00168 0.26 -0.1
180,360 - CCNA_00168 0.26 +0.5
180,360 - CCNA_00168 0.26 -0.7
180,372 + CCNA_00168 0.28 +0.2
180,372 + CCNA_00168 0.28 +1.3
180,380 - CCNA_00168 0.29 +0.1
180,383 + CCNA_00168 0.30 +1.3
180,385 + CCNA_00168 0.30 +0.3
180,389 + CCNA_00168 0.31 +2.0
180,392 - CCNA_00168 0.31 +1.8
180,433 + CCNA_00168 0.38 +0.9
180,433 + CCNA_00168 0.38 +0.7
180,441 - CCNA_00168 0.40 -2.1
180,449 - CCNA_00168 0.41 +0.7
180,482 + CCNA_00168 0.46 +0.8
180,492 + CCNA_00168 0.48 +0.1
180,492 + CCNA_00168 0.48 -0.3
180,500 - CCNA_00168 0.49 +0.8
180,500 - CCNA_00168 0.49 +0.8
180,505 + CCNA_00168 0.50 +0.2
180,505 + CCNA_00168 0.50 -0.3
180,513 - CCNA_00168 0.52 -0.8
180,516 + CCNA_00168 0.52 -2.0
180,524 - CCNA_00168 0.53 +1.4
180,539 - CCNA_00168 0.56 -0.2
180,586 - CCNA_00168 0.64 -0.9
180,588 + CCNA_00168 0.64 +0.7
180,603 - CCNA_00168 0.67 -1.2
180,631 - CCNA_00168 0.71 -0.3
180,637 + CCNA_00168 0.72 +0.2
180,637 + CCNA_00168 0.72 +0.1
180,645 - CCNA_00168 0.74 -0.2
180,734 - CCNA_00168 0.89 -0.7
180,746 - -1.1
180,746 - -0.5
180,746 - -0.9
180,781 - -0.8
180,854 + -0.4
180,872 - +0.9
180,895 - -1.4
180,895 - -0.8
180,895 - +0.5
180,895 - -0.8
180,895 - -1.1
180,919 + -1.2
180,961 - +1.0
180,961 - +0.5
181,371 - -0.0
181,384 + -1.3
181,395 + +0.3
181,403 + +1.3
181,403 + +1.4
181,403 + -0.3
181,403 + -0.4
181,403 + -0.9
181,403 + -0.4
181,403 - -1.1
181,418 + +0.7
181,426 - +0.8
181,445 + +0.8
181,445 + -0.9
181,445 + -0.3
181,507 - +0.0
181,536 + CCNA_00169 0.10 -1.2
181,540 + CCNA_00169 0.10 -0.3
181,549 - CCNA_00169 0.11 -0.5
181,549 - CCNA_00169 0.11 -0.6
181,555 - CCNA_00169 0.11 +0.2
181,590 - CCNA_00169 0.14 -0.5
181,654 - CCNA_00169 0.18 -0.6
181,677 - CCNA_00169 0.19 -0.2
181,683 - CCNA_00169 0.20 +1.4
181,685 - CCNA_00169 0.20 -0.3
181,690 + CCNA_00169 0.20 +0.1
181,712 - CCNA_00169 0.22 +0.8
181,753 + CCNA_00169 0.24 +0.6
181,753 + CCNA_00169 0.24 -1.7
181,753 + CCNA_00169 0.24 -0.0
181,758 + CCNA_00169 0.25 -1.3
181,761 - CCNA_00169 0.25 -2.0
181,765 - CCNA_00169 0.25 +0.3

Or see this region's nucleotide sequence