Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00147

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00145 and CCNA_00146 are separated by 24 nucleotidesCCNA_00146 and CCNA_00147 are separated by 167 nucleotidesCCNA_00147 and CCNA_00148 are separated by 75 nucleotidesCCNA_00148 and CCNA_00149 are separated by 16 nucleotidesCCNA_00149 and CCNA_00150 overlap by 4 nucleotides CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568 _00145 CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186 _00146 CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470 _00147 CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079 _00148 CCNA_00149: CCNA_00149 - Cro/CI-family transcriptional regulator, at 159,096 to 159,323 _00149 CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297 _00150 Position (kb) 158 159Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 157.374 kb on - strand, within CCNA_00145at 157.374 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.381 kb on - strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.390 kb on + strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.398 kb on - strand, within CCNA_00145at 157.443 kb on - strand, within CCNA_00145at 157.445 kb on + strand, within CCNA_00145at 157.446 kb on + strand, within CCNA_00145at 157.525 kb on - strandat 157.546 kb on - strandat 157.719 kb on + strand, within CCNA_00146at 157.727 kb on - strand, within CCNA_00146at 157.727 kb on - strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.773 kb on + strand, within CCNA_00146at 157.781 kb on - strand, within CCNA_00146at 157.814 kb on + strand, within CCNA_00146at 157.822 kb on - strand, within CCNA_00146at 157.860 kb on + strand, within CCNA_00146at 157.867 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.868 kb on - strand, within CCNA_00146at 157.887 kb on + strand, within CCNA_00146at 157.887 kb on + strand, within CCNA_00146at 157.930 kb on + strand, within CCNA_00146at 157.933 kb on - strand, within CCNA_00146at 157.947 kb on + strand, within CCNA_00146at 157.955 kb on - strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.956 kb on - strand, within CCNA_00146at 157.963 kb on + strand, within CCNA_00146at 158.056 kb on + strand, within CCNA_00146at 158.061 kb on + strand, within CCNA_00146at 158.066 kb on + strand, within CCNA_00146at 158.071 kb on + strand, within CCNA_00146at 158.074 kb on - strand, within CCNA_00146at 158.079 kb on - strand, within CCNA_00146at 158.136 kb on - strandat 158.139 kb on + strandat 158.141 kb on + strandat 158.147 kb on - strandat 158.149 kb on - strandat 158.181 kb on + strandat 158.186 kb on + strandat 158.189 kb on - strandat 158.189 kb on - strandat 158.189 kb on - strandat 158.212 kb on + strandat 158.291 kb on + strandat 158.294 kb on - strandat 158.294 kb on - strandat 158.321 kb on + strandat 158.321 kb on + strandat 158.322 kb on + strandat 158.326 kb on + strandat 158.332 kb on + strandat 158.422 kb on - strand, within CCNA_00147at 158.427 kb on - strand, within CCNA_00147at 158.442 kb on - strand, within CCNA_00147at 158.465 kb on + strandat 158.473 kb on - strandat 158.473 kb on - strandat 158.473 kb on - strandat 158.517 kb on + strandat 158.535 kb on - strandat 158.607 kb on + strand, within CCNA_00148at 158.610 kb on - strand, within CCNA_00148at 158.615 kb on - strand, within CCNA_00148at 158.641 kb on - strand, within CCNA_00148at 158.676 kb on + strand, within CCNA_00148at 158.765 kb on + strand, within CCNA_00148at 158.801 kb on + strand, within CCNA_00148at 158.871 kb on + strand, within CCNA_00148at 158.894 kb on - strand, within CCNA_00148at 158.908 kb on - strand, within CCNA_00148at 158.909 kb on - strand, within CCNA_00148at 158.976 kb on + strand, within CCNA_00148at 158.976 kb on + strand, within CCNA_00148at 158.976 kb on + strand, within CCNA_00148at 158.976 kb on + strand, within CCNA_00148at 158.976 kb on + strand, within CCNA_00148at 158.984 kb on - strand, within CCNA_00148at 159.005 kb on - strand, within CCNA_00148at 159.011 kb on + strand, within CCNA_00148at 159.020 kb on - strand, within CCNA_00148at 159.076 kb on - strandat 159.078 kb on + strandat 159.086 kb on - strandat 159.111 kb on + strandat 159.111 kb on + strandat 159.119 kb on - strand, within CCNA_00149at 159.134 kb on - strand, within CCNA_00149at 159.179 kb on - strand, within CCNA_00149at 159.222 kb on + strand, within CCNA_00149at 159.279 kb on + strand, within CCNA_00149at 159.370 kb on + strandat 159.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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157,374 - CCNA_00145 0.68 +1.0
157,374 - CCNA_00145 0.68 -3.1
157,381 - CCNA_00145 0.69 -0.0
157,381 - CCNA_00145 0.69 +0.2
157,381 - CCNA_00145 0.69 -0.5
157,390 + CCNA_00145 0.70 -0.1
157,390 + CCNA_00145 0.70 +0.8
157,390 + CCNA_00145 0.70 +0.1
157,390 + CCNA_00145 0.70 +1.2
157,398 - CCNA_00145 0.72 -0.9
157,398 - CCNA_00145 0.72 +0.3
157,398 - CCNA_00145 0.72 -0.4
157,398 - CCNA_00145 0.72 +0.5
157,443 - CCNA_00145 0.79 -0.4
157,445 + CCNA_00145 0.79 +0.6
157,446 + CCNA_00145 0.80 -0.2
157,525 - -0.7
157,546 - +0.2
157,719 + CCNA_00146 0.21 +0.1
157,727 - CCNA_00146 0.23 -0.0
157,727 - CCNA_00146 0.23 -0.6
157,773 + CCNA_00146 0.30 +0.0
157,773 + CCNA_00146 0.30 +0.5
157,773 + CCNA_00146 0.30 -0.1
157,781 - CCNA_00146 0.32 -0.3
157,814 + CCNA_00146 0.37 +0.7
157,822 - CCNA_00146 0.39 +0.6
157,860 + CCNA_00146 0.45 +0.5
157,867 - CCNA_00146 0.46 -1.4
157,868 - CCNA_00146 0.46 -0.8
157,868 - CCNA_00146 0.46 -0.1
157,887 + CCNA_00146 0.49 +0.7
157,887 + CCNA_00146 0.49 -1.5
157,930 + CCNA_00146 0.57 +0.2
157,933 - CCNA_00146 0.57 -0.3
157,947 + CCNA_00146 0.60 +0.4
157,955 - CCNA_00146 0.61 -0.2
157,956 - CCNA_00146 0.61 -0.5
157,956 - CCNA_00146 0.61 -0.1
157,963 + CCNA_00146 0.62 +0.3
158,056 + CCNA_00146 0.78 -0.6
158,061 + CCNA_00146 0.79 +2.6
158,066 + CCNA_00146 0.80 +2.3
158,071 + CCNA_00146 0.80 -0.3
158,074 - CCNA_00146 0.81 +0.7
158,079 - CCNA_00146 0.82 +0.2
158,136 - -0.4
158,139 + +0.5
158,141 + +1.8
158,147 - -2.7
158,149 - -0.5
158,181 + -0.1
158,186 + -2.0
158,189 - -0.8
158,189 - +0.4
158,189 - +0.3
158,212 + -0.4
158,291 + +0.3
158,294 - +0.0
158,294 - -0.3
158,321 + -0.5
158,321 + +0.1
158,322 + +1.0
158,326 + +0.1
158,332 + +0.2
158,422 - CCNA_00147 0.58 +1.7
158,427 - CCNA_00147 0.62 -1.7
158,442 - CCNA_00147 0.75 -0.5
158,465 + +0.3
158,473 - +0.6
158,473 - -1.6
158,473 - -0.8
158,517 + +0.1
158,535 - +0.1
158,607 + CCNA_00148 0.11 +0.2
158,610 - CCNA_00148 0.12 -0.1
158,615 - CCNA_00148 0.13 -0.7
158,641 - CCNA_00148 0.18 -1.0
158,676 + CCNA_00148 0.24 -1.6
158,765 + CCNA_00148 0.41 +1.4
158,801 + CCNA_00148 0.48 +0.7
158,871 + CCNA_00148 0.61 +0.5
158,894 - CCNA_00148 0.65 +0.1
158,908 - CCNA_00148 0.68 -0.5
158,909 - CCNA_00148 0.68 -1.0
158,976 + CCNA_00148 0.81 -1.3
158,976 + CCNA_00148 0.81 +0.6
158,976 + CCNA_00148 0.81 -0.6
158,976 + CCNA_00148 0.81 +0.9
158,976 + CCNA_00148 0.81 -0.4
158,984 - CCNA_00148 0.82 -0.2
159,005 - CCNA_00148 0.86 +0.1
159,011 + CCNA_00148 0.87 +0.3
159,020 - CCNA_00148 0.89 -0.3
159,076 - -0.9
159,078 + +0.5
159,086 - -0.1
159,111 + +0.4
159,111 + +0.1
159,119 - CCNA_00149 0.10 +0.3
159,134 - CCNA_00149 0.17 -1.4
159,179 - CCNA_00149 0.36 -0.9
159,222 + CCNA_00149 0.55 +0.5
159,279 + CCNA_00149 0.80 -0.9
159,370 + +0.3
159,391 - +0.2

Or see this region's nucleotide sequence