Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00145 and CCNA_00146 are separated by 24 nucleotides CCNA_00146 and CCNA_00147 are separated by 167 nucleotides CCNA_00147 and CCNA_00148 are separated by 75 nucleotides CCNA_00148 and CCNA_00149 are separated by 16 nucleotides CCNA_00149 and CCNA_00150 overlap by 4 nucleotides
CCNA_00145: CCNA_00145 - xanthosine triphosphate pyrophosphatase, at 156,966 to 157,568
_00145
CCNA_00146: CCNA_00146 - glutathione S-transferase, at 157,593 to 158,186
_00146
CCNA_00147: CCNA_00147 - hypothetical protein, at 158,354 to 158,470
_00147
CCNA_00148: CCNA_00148 - hypothetical protein, at 158,546 to 159,079
_00148
CCNA_00149: CCNA_00149 - Cro/CI-family transcriptional regulator, at 159,096 to 159,323
_00149
CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297
_00150
Position (kb)
158
159 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 157.374 kb on - strand, within CCNA_00145 at 157.374 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.381 kb on - strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.390 kb on + strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.398 kb on - strand, within CCNA_00145 at 157.443 kb on - strand, within CCNA_00145 at 157.445 kb on + strand, within CCNA_00145 at 157.446 kb on + strand, within CCNA_00145 at 157.525 kb on - strand at 157.546 kb on - strand at 157.719 kb on + strand, within CCNA_00146 at 157.727 kb on - strand, within CCNA_00146 at 157.727 kb on - strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.773 kb on + strand, within CCNA_00146 at 157.781 kb on - strand, within CCNA_00146 at 157.814 kb on + strand, within CCNA_00146 at 157.822 kb on - strand, within CCNA_00146 at 157.860 kb on + strand, within CCNA_00146 at 157.867 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.868 kb on - strand, within CCNA_00146 at 157.887 kb on + strand, within CCNA_00146 at 157.887 kb on + strand, within CCNA_00146 at 157.930 kb on + strand, within CCNA_00146 at 157.933 kb on - strand, within CCNA_00146 at 157.947 kb on + strand, within CCNA_00146 at 157.955 kb on - strand, within CCNA_00146 at 157.956 kb on - strand, within CCNA_00146 at 157.956 kb on - strand, within CCNA_00146 at 157.963 kb on + strand, within CCNA_00146 at 158.056 kb on + strand, within CCNA_00146 at 158.061 kb on + strand, within CCNA_00146 at 158.066 kb on + strand, within CCNA_00146 at 158.071 kb on + strand, within CCNA_00146 at 158.074 kb on - strand, within CCNA_00146 at 158.079 kb on - strand, within CCNA_00146 at 158.136 kb on - strand at 158.139 kb on + strand at 158.141 kb on + strand at 158.147 kb on - strand at 158.149 kb on - strand at 158.181 kb on + strand at 158.186 kb on + strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.189 kb on - strand at 158.212 kb on + strand at 158.291 kb on + strand at 158.294 kb on - strand at 158.294 kb on - strand at 158.321 kb on + strand at 158.321 kb on + strand at 158.322 kb on + strand at 158.326 kb on + strand at 158.332 kb on + strand at 158.422 kb on - strand, within CCNA_00147 at 158.427 kb on - strand, within CCNA_00147 at 158.442 kb on - strand, within CCNA_00147 at 158.465 kb on + strand at 158.473 kb on - strand at 158.473 kb on - strand at 158.473 kb on - strand at 158.517 kb on + strand at 158.535 kb on - strand at 158.607 kb on + strand, within CCNA_00148 at 158.610 kb on - strand, within CCNA_00148 at 158.615 kb on - strand, within CCNA_00148 at 158.641 kb on - strand, within CCNA_00148 at 158.676 kb on + strand, within CCNA_00148 at 158.765 kb on + strand, within CCNA_00148 at 158.801 kb on + strand, within CCNA_00148 at 158.871 kb on + strand, within CCNA_00148 at 158.894 kb on - strand, within CCNA_00148 at 158.908 kb on - strand, within CCNA_00148 at 158.909 kb on - strand, within CCNA_00148 at 158.976 kb on + strand, within CCNA_00148 at 158.976 kb on + strand, within CCNA_00148 at 158.976 kb on + strand, within CCNA_00148 at 158.976 kb on + strand, within CCNA_00148 at 158.976 kb on + strand, within CCNA_00148 at 158.984 kb on - strand, within CCNA_00148 at 159.005 kb on - strand, within CCNA_00148 at 159.011 kb on + strand, within CCNA_00148 at 159.020 kb on - strand, within CCNA_00148 at 159.076 kb on - strand at 159.078 kb on + strand at 159.086 kb on - strand at 159.111 kb on + strand at 159.111 kb on + strand at 159.119 kb on - strand, within CCNA_00149 at 159.134 kb on - strand, within CCNA_00149 at 159.179 kb on - strand, within CCNA_00149 at 159.222 kb on + strand, within CCNA_00149 at 159.279 kb on + strand, within CCNA_00149 at 159.370 kb on + strand at 159.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 157,374 - CCNA_00145 0.68 +1.0 157,374 - CCNA_00145 0.68 -3.1 157,381 - CCNA_00145 0.69 -0.0 157,381 - CCNA_00145 0.69 +0.2 157,381 - CCNA_00145 0.69 -0.5 157,390 + CCNA_00145 0.70 -0.1 157,390 + CCNA_00145 0.70 +0.8 157,390 + CCNA_00145 0.70 +0.1 157,390 + CCNA_00145 0.70 +1.2 157,398 - CCNA_00145 0.72 -0.9 157,398 - CCNA_00145 0.72 +0.3 157,398 - CCNA_00145 0.72 -0.4 157,398 - CCNA_00145 0.72 +0.5 157,443 - CCNA_00145 0.79 -0.4 157,445 + CCNA_00145 0.79 +0.6 157,446 + CCNA_00145 0.80 -0.2 157,525 - -0.7 157,546 - +0.2 157,719 + CCNA_00146 0.21 +0.1 157,727 - CCNA_00146 0.23 -0.0 157,727 - CCNA_00146 0.23 -0.6 157,773 + CCNA_00146 0.30 +0.0 157,773 + CCNA_00146 0.30 +0.5 157,773 + CCNA_00146 0.30 -0.1 157,781 - CCNA_00146 0.32 -0.3 157,814 + CCNA_00146 0.37 +0.7 157,822 - CCNA_00146 0.39 +0.6 157,860 + CCNA_00146 0.45 +0.5 157,867 - CCNA_00146 0.46 -1.4 157,868 - CCNA_00146 0.46 -0.8 157,868 - CCNA_00146 0.46 -0.1 157,887 + CCNA_00146 0.49 +0.7 157,887 + CCNA_00146 0.49 -1.5 157,930 + CCNA_00146 0.57 +0.2 157,933 - CCNA_00146 0.57 -0.3 157,947 + CCNA_00146 0.60 +0.4 157,955 - CCNA_00146 0.61 -0.2 157,956 - CCNA_00146 0.61 -0.5 157,956 - CCNA_00146 0.61 -0.1 157,963 + CCNA_00146 0.62 +0.3 158,056 + CCNA_00146 0.78 -0.6 158,061 + CCNA_00146 0.79 +2.6 158,066 + CCNA_00146 0.80 +2.3 158,071 + CCNA_00146 0.80 -0.3 158,074 - CCNA_00146 0.81 +0.7 158,079 - CCNA_00146 0.82 +0.2 158,136 - -0.4 158,139 + +0.5 158,141 + +1.8 158,147 - -2.7 158,149 - -0.5 158,181 + -0.1 158,186 + -2.0 158,189 - -0.8 158,189 - +0.4 158,189 - +0.3 158,212 + -0.4 158,291 + +0.3 158,294 - +0.0 158,294 - -0.3 158,321 + -0.5 158,321 + +0.1 158,322 + +1.0 158,326 + +0.1 158,332 + +0.2 158,422 - CCNA_00147 0.58 +1.7 158,427 - CCNA_00147 0.62 -1.7 158,442 - CCNA_00147 0.75 -0.5 158,465 + +0.3 158,473 - +0.6 158,473 - -1.6 158,473 - -0.8 158,517 + +0.1 158,535 - +0.1 158,607 + CCNA_00148 0.11 +0.2 158,610 - CCNA_00148 0.12 -0.1 158,615 - CCNA_00148 0.13 -0.7 158,641 - CCNA_00148 0.18 -1.0 158,676 + CCNA_00148 0.24 -1.6 158,765 + CCNA_00148 0.41 +1.4 158,801 + CCNA_00148 0.48 +0.7 158,871 + CCNA_00148 0.61 +0.5 158,894 - CCNA_00148 0.65 +0.1 158,908 - CCNA_00148 0.68 -0.5 158,909 - CCNA_00148 0.68 -1.0 158,976 + CCNA_00148 0.81 -1.3 158,976 + CCNA_00148 0.81 +0.6 158,976 + CCNA_00148 0.81 -0.6 158,976 + CCNA_00148 0.81 +0.9 158,976 + CCNA_00148 0.81 -0.4 158,984 - CCNA_00148 0.82 -0.2 159,005 - CCNA_00148 0.86 +0.1 159,011 + CCNA_00148 0.87 +0.3 159,020 - CCNA_00148 0.89 -0.3 159,076 - -0.9 159,078 + +0.5 159,086 - -0.1 159,111 + +0.4 159,111 + +0.1 159,119 - CCNA_00149 0.10 +0.3 159,134 - CCNA_00149 0.17 -1.4 159,179 - CCNA_00149 0.36 -0.9 159,222 + CCNA_00149 0.55 +0.5 159,279 + CCNA_00149 0.80 -0.9 159,370 + +0.3 159,391 - +0.2
Or see this region's nucleotide sequence