Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00028

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00026 and CCNA_00027 are separated by 98 nucleotidesCCNA_00027 and CCNA_00028 are separated by 145 nucleotidesCCNA_00028 and CCNA_00029 are separated by 255 nucleotidesCCNA_00029 and CCNA_00030 are separated by 48 nucleotides CCNA_00026: CCNA_00026 - PAS-family sensor histidine kinase, at 26,701 to 29,403 _00026 CCNA_00027: CCNA_00027 - 2OG-Fe(II) oxygenase, at 29,502 to 30,191 _00027 CCNA_00028: CCNA_00028 - TonB-dependent receptor, at 30,337 to 32,658 _00028 CCNA_00029: CCNA_00029 - lysine exporter protein, at 32,914 to 33,546 _00029 CCNA_00030: CCNA_00030 - ribonuclease T2, at 33,595 to 34,329 _00030 Position (kb) 30 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3at 29.345 kb on + strandat 29.387 kb on + strandat 29.440 kb on + strandat 29.500 kb on + strandat 29.505 kb on + strandat 29.540 kb on - strandat 29.573 kb on + strand, within CCNA_00027at 29.581 kb on - strand, within CCNA_00027at 29.597 kb on + strand, within CCNA_00027at 29.717 kb on - strand, within CCNA_00027at 29.724 kb on + strand, within CCNA_00027at 29.724 kb on + strand, within CCNA_00027at 29.727 kb on + strand, within CCNA_00027at 29.821 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on - strand, within CCNA_00027at 29.892 kb on + strand, within CCNA_00027at 29.983 kb on + strand, within CCNA_00027at 30.021 kb on - strand, within CCNA_00027at 30.034 kb on + strand, within CCNA_00027at 30.047 kb on - strand, within CCNA_00027at 30.047 kb on - strand, within CCNA_00027at 30.164 kb on - strandat 30.246 kb on + strandat 30.330 kb on - strandat 30.335 kb on + strandat 30.335 kb on + strandat 30.422 kb on - strandat 30.424 kb on - strandat 30.631 kb on - strand, within CCNA_00028at 30.683 kb on - strand, within CCNA_00028at 30.815 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.904 kb on - strand, within CCNA_00028at 30.988 kb on + strand, within CCNA_00028at 31.049 kb on - strand, within CCNA_00028at 31.129 kb on - strand, within CCNA_00028at 31.223 kb on - strand, within CCNA_00028at 31.342 kb on - strand, within CCNA_00028at 31.356 kb on - strand, within CCNA_00028at 31.377 kb on - strand, within CCNA_00028at 31.398 kb on - strand, within CCNA_00028at 31.572 kb on - strand, within CCNA_00028at 31.588 kb on + strand, within CCNA_00028at 31.774 kb on - strand, within CCNA_00028at 31.795 kb on - strand, within CCNA_00028at 31.808 kb on - strand, within CCNA_00028at 31.821 kb on - strand, within CCNA_00028at 31.831 kb on - strand, within CCNA_00028at 31.884 kb on - strand, within CCNA_00028at 31.981 kb on - strand, within CCNA_00028at 32.060 kb on - strand, within CCNA_00028at 32.111 kb on - strand, within CCNA_00028at 32.191 kb on - strand, within CCNA_00028at 32.344 kb on - strand, within CCNA_00028at 32.349 kb on - strand, within CCNA_00028at 32.413 kb on - strand, within CCNA_00028at 32.428 kb on - strandat 32.573 kb on - strandat 32.655 kb on + strandat 32.663 kb on + strandat 32.671 kb on - strandat 32.714 kb on + strandat 32.720 kb on - strandat 32.722 kb on - strandat 32.722 kb on - strandat 32.834 kb on + strandat 32.894 kb on - strandat 32.930 kb on - strandat 32.946 kb on - strandat 32.946 kb on - strandat 32.946 kb on - strandat 32.954 kb on + strandat 32.965 kb on + strandat 32.966 kb on - strandat 32.972 kb on + strandat 32.972 kb on + strandat 32.978 kb on + strand, within CCNA_00029at 32.980 kb on - strand, within CCNA_00029at 32.980 kb on - strand, within CCNA_00029at 33.004 kb on + strand, within CCNA_00029at 33.035 kb on - strand, within CCNA_00029at 33.053 kb on - strand, within CCNA_00029at 33.088 kb on + strand, within CCNA_00029at 33.106 kb on + strand, within CCNA_00029at 33.108 kb on + strand, within CCNA_00029at 33.116 kb on - strand, within CCNA_00029at 33.128 kb on + strand, within CCNA_00029at 33.128 kb on + strand, within CCNA_00029at 33.128 kb on + strand, within CCNA_00029at 33.128 kb on + strand, within CCNA_00029at 33.128 kb on + strand, within CCNA_00029at 33.136 kb on - strand, within CCNA_00029at 33.136 kb on - strand, within CCNA_00029at 33.136 kb on - strand, within CCNA_00029at 33.136 kb on - strand, within CCNA_00029at 33.136 kb on - strand, within CCNA_00029at 33.194 kb on - strand, within CCNA_00029at 33.217 kb on + strand, within CCNA_00029at 33.228 kb on + strand, within CCNA_00029at 33.228 kb on + strand, within CCNA_00029at 33.228 kb on + strand, within CCNA_00029at 33.228 kb on + strand, within CCNA_00029at 33.228 kb on + strand, within CCNA_00029at 33.237 kb on - strand, within CCNA_00029at 33.237 kb on - strand, within CCNA_00029at 33.237 kb on - strand, within CCNA_00029at 33.293 kb on - strand, within CCNA_00029at 33.300 kb on + strand, within CCNA_00029at 33.300 kb on + strand, within CCNA_00029at 33.306 kb on - strand, within CCNA_00029at 33.306 kb on - strand, within CCNA_00029at 33.340 kb on - strand, within CCNA_00029at 33.350 kb on + strand, within CCNA_00029at 33.350 kb on + strand, within CCNA_00029at 33.358 kb on - strand, within CCNA_00029at 33.376 kb on - strand, within CCNA_00029at 33.379 kb on + strand, within CCNA_00029at 33.387 kb on - strand, within CCNA_00029at 33.387 kb on - strand, within CCNA_00029at 33.478 kb on - strand, within CCNA_00029at 33.501 kb on + strandat 33.507 kb on - strandat 33.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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29,345 + +0.6
29,387 + -0.3
29,440 + -0.7
29,500 + +0.4
29,505 + +0.4
29,540 - +0.6
29,573 + CCNA_00027 0.10 +0.3
29,581 - CCNA_00027 0.11 +0.7
29,597 + CCNA_00027 0.14 +0.3
29,717 - CCNA_00027 0.31 +0.7
29,724 + CCNA_00027 0.32 -0.8
29,724 + CCNA_00027 0.32 +0.3
29,727 + CCNA_00027 0.33 +0.6
29,821 + CCNA_00027 0.46 +0.7
29,833 + CCNA_00027 0.48 +0.3
29,833 + CCNA_00027 0.48 +0.2
29,833 + CCNA_00027 0.48 +0.4
29,833 + CCNA_00027 0.48 +0.5
29,833 + CCNA_00027 0.48 +0.1
29,833 - CCNA_00027 0.48 +0.6
29,892 + CCNA_00027 0.57 +1.1
29,983 + CCNA_00027 0.70 +0.8
30,021 - CCNA_00027 0.75 +0.5
30,034 + CCNA_00027 0.77 +0.2
30,047 - CCNA_00027 0.79 +0.8
30,047 - CCNA_00027 0.79 +0.4
30,164 - -0.0
30,246 + +0.4
30,330 - +0.5
30,335 + +0.8
30,335 + -1.2
30,422 - +0.3
30,424 - +0.1
30,631 - CCNA_00028 0.13 +0.3
30,683 - CCNA_00028 0.15 +0.8
30,815 - CCNA_00028 0.21 +0.8
30,862 - CCNA_00028 0.23 +0.2
30,862 - CCNA_00028 0.23 +0.5
30,862 - CCNA_00028 0.23 +1.3
30,862 - CCNA_00028 0.23 +0.7
30,904 - CCNA_00028 0.24 +0.1
30,988 + CCNA_00028 0.28 +0.8
31,049 - CCNA_00028 0.31 +0.6
31,129 - CCNA_00028 0.34 +0.5
31,223 - CCNA_00028 0.38 +0.8
31,342 - CCNA_00028 0.43 +0.3
31,356 - CCNA_00028 0.44 +0.5
31,377 - CCNA_00028 0.45 +1.1
31,398 - CCNA_00028 0.46 +0.4
31,572 - CCNA_00028 0.53 +0.2
31,588 + CCNA_00028 0.54 +0.2
31,774 - CCNA_00028 0.62 -0.1
31,795 - CCNA_00028 0.63 +0.4
31,808 - CCNA_00028 0.63 +1.0
31,821 - CCNA_00028 0.64 +1.1
31,831 - CCNA_00028 0.64 +0.6
31,884 - CCNA_00028 0.67 +0.9
31,981 - CCNA_00028 0.71 +0.7
32,060 - CCNA_00028 0.74 +0.7
32,111 - CCNA_00028 0.76 +0.6
32,191 - CCNA_00028 0.80 +0.5
32,344 - CCNA_00028 0.86 +0.8
32,349 - CCNA_00028 0.87 +1.2
32,413 - CCNA_00028 0.89 +0.6
32,428 - +0.7
32,573 - +0.7
32,655 + +0.3
32,663 + -0.9
32,671 - +0.3
32,714 + -0.2
32,720 - +1.2
32,722 - +1.1
32,722 - +0.5
32,834 + -0.9
32,894 - -0.9
32,930 - +0.1
32,946 - -0.2
32,946 - +0.1
32,946 - -1.4
32,954 + -0.6
32,965 + -0.7
32,966 - +0.8
32,972 + +1.0
32,972 + +0.6
32,978 + CCNA_00029 0.10 +0.9
32,980 - CCNA_00029 0.10 +0.3
32,980 - CCNA_00029 0.10 -0.1
33,004 + CCNA_00029 0.14 +0.3
33,035 - CCNA_00029 0.19 +0.5
33,053 - CCNA_00029 0.22 -0.6
33,088 + CCNA_00029 0.27 -0.0
33,106 + CCNA_00029 0.30 +0.4
33,108 + CCNA_00029 0.31 -0.1
33,116 - CCNA_00029 0.32 -0.7
33,128 + CCNA_00029 0.34 +0.3
33,128 + CCNA_00029 0.34 +1.1
33,128 + CCNA_00029 0.34 -0.2
33,128 + CCNA_00029 0.34 +0.4
33,128 + CCNA_00029 0.34 -1.1
33,136 - CCNA_00029 0.35 +2.2
33,136 - CCNA_00029 0.35 +0.8
33,136 - CCNA_00029 0.35 -1.1
33,136 - CCNA_00029 0.35 +0.7
33,136 - CCNA_00029 0.35 +0.5
33,194 - CCNA_00029 0.44 +0.5
33,217 + CCNA_00029 0.48 -0.3
33,228 + CCNA_00029 0.50 -0.7
33,228 + CCNA_00029 0.50 -0.2
33,228 + CCNA_00029 0.50 -0.3
33,228 + CCNA_00029 0.50 +0.1
33,228 + CCNA_00029 0.50 -0.6
33,237 - CCNA_00029 0.51 -1.3
33,237 - CCNA_00029 0.51 -0.4
33,237 - CCNA_00029 0.51 -1.4
33,293 - CCNA_00029 0.60 -1.1
33,300 + CCNA_00029 0.61 -0.8
33,300 + CCNA_00029 0.61 -0.0
33,306 - CCNA_00029 0.62 -1.2
33,306 - CCNA_00029 0.62 +0.2
33,340 - CCNA_00029 0.67 +1.1
33,350 + CCNA_00029 0.69 -0.4
33,350 + CCNA_00029 0.69 -0.1
33,358 - CCNA_00029 0.70 -0.0
33,376 - CCNA_00029 0.73 +0.5
33,379 + CCNA_00029 0.73 +0.6
33,387 - CCNA_00029 0.75 -1.9
33,387 - CCNA_00029 0.75 -1.6
33,478 - CCNA_00029 0.89 +0.3
33,501 + -0.2
33,507 - +2.8
33,648 - +0.3

Or see this region's nucleotide sequence