Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00027

Experiment: PYE with CHIR-090 10 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00026 and CCNA_00027 are separated by 98 nucleotidesCCNA_00027 and CCNA_00028 are separated by 145 nucleotides CCNA_00026: CCNA_00026 - PAS-family sensor histidine kinase, at 26,701 to 29,403 _00026 CCNA_00027: CCNA_00027 - 2OG-Fe(II) oxygenase, at 29,502 to 30,191 _00027 CCNA_00028: CCNA_00028 - TonB-dependent receptor, at 30,337 to 32,658 _00028 Position (kb) 29 30 31Strain fitness (log2 ratio) -1 0 1 2at 28.564 kb on - strand, within CCNA_00026at 28.586 kb on + strand, within CCNA_00026at 28.592 kb on + strand, within CCNA_00026at 28.619 kb on - strand, within CCNA_00026at 28.647 kb on + strand, within CCNA_00026at 28.694 kb on + strand, within CCNA_00026at 28.694 kb on + strand, within CCNA_00026at 28.702 kb on - strand, within CCNA_00026at 28.702 kb on - strand, within CCNA_00026at 28.702 kb on - strand, within CCNA_00026at 28.702 kb on - strand, within CCNA_00026at 28.723 kb on - strand, within CCNA_00026at 28.733 kb on - strand, within CCNA_00026at 28.733 kb on - strand, within CCNA_00026at 28.733 kb on - strand, within CCNA_00026at 28.760 kb on - strand, within CCNA_00026at 28.774 kb on + strand, within CCNA_00026at 28.783 kb on + strand, within CCNA_00026at 28.798 kb on + strand, within CCNA_00026at 28.801 kb on - strand, within CCNA_00026at 28.806 kb on - strand, within CCNA_00026at 28.828 kb on - strand, within CCNA_00026at 28.894 kb on - strand, within CCNA_00026at 28.973 kb on + strand, within CCNA_00026at 28.979 kb on + strand, within CCNA_00026at 28.986 kb on - strand, within CCNA_00026at 29.015 kb on + strand, within CCNA_00026at 29.062 kb on + strand, within CCNA_00026at 29.091 kb on - strand, within CCNA_00026at 29.303 kb on + strandat 29.345 kb on + strandat 29.387 kb on + strandat 29.440 kb on + strandat 29.500 kb on + strandat 29.505 kb on + strandat 29.540 kb on - strandat 29.573 kb on + strand, within CCNA_00027at 29.581 kb on - strand, within CCNA_00027at 29.597 kb on + strand, within CCNA_00027at 29.717 kb on - strand, within CCNA_00027at 29.724 kb on + strand, within CCNA_00027at 29.724 kb on + strand, within CCNA_00027at 29.727 kb on + strand, within CCNA_00027at 29.821 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on + strand, within CCNA_00027at 29.833 kb on - strand, within CCNA_00027at 29.892 kb on + strand, within CCNA_00027at 29.983 kb on + strand, within CCNA_00027at 30.021 kb on - strand, within CCNA_00027at 30.034 kb on + strand, within CCNA_00027at 30.047 kb on - strand, within CCNA_00027at 30.047 kb on - strand, within CCNA_00027at 30.164 kb on - strandat 30.246 kb on + strandat 30.330 kb on - strandat 30.335 kb on + strandat 30.335 kb on + strandat 30.422 kb on - strandat 30.424 kb on - strandat 30.631 kb on - strand, within CCNA_00028at 30.683 kb on - strand, within CCNA_00028at 30.815 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.862 kb on - strand, within CCNA_00028at 30.904 kb on - strand, within CCNA_00028at 30.988 kb on + strand, within CCNA_00028at 31.049 kb on - strand, within CCNA_00028at 31.129 kb on - strand, within CCNA_00028

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
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28,564 - CCNA_00026 0.69 +0.4
28,586 + CCNA_00026 0.70 +0.5
28,592 + CCNA_00026 0.70 -0.1
28,619 - CCNA_00026 0.71 +1.2
28,647 + CCNA_00026 0.72 -1.2
28,694 + CCNA_00026 0.74 +0.5
28,694 + CCNA_00026 0.74 -0.3
28,702 - CCNA_00026 0.74 +0.3
28,702 - CCNA_00026 0.74 +0.9
28,702 - CCNA_00026 0.74 -0.1
28,702 - CCNA_00026 0.74 +0.7
28,723 - CCNA_00026 0.75 -0.6
28,733 - CCNA_00026 0.75 +0.2
28,733 - CCNA_00026 0.75 -0.0
28,733 - CCNA_00026 0.75 +2.0
28,760 - CCNA_00026 0.76 +2.4
28,774 + CCNA_00026 0.77 -0.2
28,783 + CCNA_00026 0.77 -1.3
28,798 + CCNA_00026 0.78 -0.2
28,801 - CCNA_00026 0.78 +0.1
28,806 - CCNA_00026 0.78 +0.8
28,828 - CCNA_00026 0.79 +0.2
28,894 - CCNA_00026 0.81 +0.4
28,973 + CCNA_00026 0.84 +0.5
28,979 + CCNA_00026 0.84 +2.1
28,986 - CCNA_00026 0.85 -0.6
29,015 + CCNA_00026 0.86 +0.5
29,062 + CCNA_00026 0.87 +0.2
29,091 - CCNA_00026 0.88 -0.6
29,303 + -1.1
29,345 + +0.6
29,387 + -0.3
29,440 + -0.7
29,500 + +0.4
29,505 + +0.4
29,540 - +0.6
29,573 + CCNA_00027 0.10 +0.3
29,581 - CCNA_00027 0.11 +0.7
29,597 + CCNA_00027 0.14 +0.3
29,717 - CCNA_00027 0.31 +0.7
29,724 + CCNA_00027 0.32 -0.8
29,724 + CCNA_00027 0.32 +0.3
29,727 + CCNA_00027 0.33 +0.6
29,821 + CCNA_00027 0.46 +0.7
29,833 + CCNA_00027 0.48 +0.3
29,833 + CCNA_00027 0.48 +0.2
29,833 + CCNA_00027 0.48 +0.4
29,833 + CCNA_00027 0.48 +0.5
29,833 + CCNA_00027 0.48 +0.1
29,833 - CCNA_00027 0.48 +0.6
29,892 + CCNA_00027 0.57 +1.1
29,983 + CCNA_00027 0.70 +0.8
30,021 - CCNA_00027 0.75 +0.5
30,034 + CCNA_00027 0.77 +0.2
30,047 - CCNA_00027 0.79 +0.8
30,047 - CCNA_00027 0.79 +0.4
30,164 - -0.0
30,246 + +0.4
30,330 - +0.5
30,335 + +0.8
30,335 + -1.2
30,422 - +0.3
30,424 - +0.1
30,631 - CCNA_00028 0.13 +0.3
30,683 - CCNA_00028 0.15 +0.8
30,815 - CCNA_00028 0.21 +0.8
30,862 - CCNA_00028 0.23 +0.2
30,862 - CCNA_00028 0.23 +0.5
30,862 - CCNA_00028 0.23 +1.3
30,862 - CCNA_00028 0.23 +0.7
30,904 - CCNA_00028 0.24 +0.1
30,988 + CCNA_00028 0.28 +0.8
31,049 - CCNA_00028 0.31 +0.6
31,129 - CCNA_00028 0.34 +0.5

Or see this region's nucleotide sequence