Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00018 and CCNA_00019 are separated by 30 nucleotides CCNA_00019 and CCNA_00020 overlap by 4 nucleotides CCNA_00020 and CCNA_03911 overlap by 4 nucleotides CCNA_03911 and CCNA_00021 are separated by 61 nucleotides
CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784
_00018
CCNA_00019: CCNA_00019 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 19,815 to 20,447
_00019
CCNA_00020: CCNA_00020 - hypothetical protein, at 20,444 to 20,668
_00020
CCNA_03911: CCNA_03911 - hypothetical protein, at 20,665 to 20,778
_03911
CCNA_00021: CCNA_00021 - putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL, at 20,840 to 23,032
_00021
Position (kb) 19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.907 kb on + strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.928 kb on + strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.948 kb on + strand, within CCNA_00018 at 18.963 kb on + strand, within CCNA_00018 at 18.972 kb on + strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 19.039 kb on + strand, within CCNA_00018 at 19.072 kb on + strand, within CCNA_00018 at 19.105 kb on + strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.153 kb on + strand, within CCNA_00018 at 19.153 kb on + strand, within CCNA_00018 at 19.192 kb on + strand, within CCNA_00018 at 19.243 kb on + strand, within CCNA_00018 at 19.277 kb on - strand, within CCNA_00018 at 19.299 kb on - strand, within CCNA_00018 at 19.299 kb on - strand, within CCNA_00018 at 19.335 kb on - strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.345 kb on - strand, within CCNA_00018 at 19.381 kb on - strand, within CCNA_00018 at 19.389 kb on + strand, within CCNA_00018 at 19.389 kb on + strand, within CCNA_00018 at 19.394 kb on + strand, within CCNA_00018 at 19.466 kb on + strand, within CCNA_00018 at 19.469 kb on + strand, within CCNA_00018 at 19.494 kb on + strand, within CCNA_00018 at 19.547 kb on + strand, within CCNA_00018 at 19.609 kb on - strand, within CCNA_00018 at 19.620 kb on + strand, within CCNA_00018 at 19.626 kb on - strand, within CCNA_00018 at 19.640 kb on + strand, within CCNA_00018 at 19.679 kb on + strand, within CCNA_00018 at 19.708 kb on - strand at 19.724 kb on + strand at 19.724 kb on + strand at 19.732 kb on - strand at 19.743 kb on + strand at 19.835 kb on - strand at 19.922 kb on + strand, within CCNA_00019 at 19.945 kb on - strand, within CCNA_00019 at 19.966 kb on + strand, within CCNA_00019 at 20.026 kb on + strand, within CCNA_00019 at 20.046 kb on + strand, within CCNA_00019 at 20.073 kb on + strand, within CCNA_00019 at 20.165 kb on - strand, within CCNA_00019 at 20.198 kb on - strand, within CCNA_00019 at 20.203 kb on - strand, within CCNA_00019 at 20.234 kb on + strand, within CCNA_00019 at 20.236 kb on + strand, within CCNA_00019 at 20.239 kb on + strand, within CCNA_00019 at 20.242 kb on - strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.265 kb on - strand, within CCNA_00019 at 20.287 kb on - strand, within CCNA_00019 at 20.317 kb on - strand, within CCNA_00019 at 20.392 kb on + strand at 20.442 kb on + strand at 20.678 kb on - strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.724 kb on + strand, within CCNA_03911 at 20.730 kb on + strand, within CCNA_03911 at 20.730 kb on + strand, within CCNA_03911 at 20.770 kb on - strand at 20.869 kb on - strand at 20.890 kb on + strand at 20.901 kb on + strand at 20.989 kb on - strand at 21.013 kb on - strand at 21.091 kb on + strand, within CCNA_00021 at 21.099 kb on - strand, within CCNA_00021 at 21.099 kb on - strand, within CCNA_00021 at 21.108 kb on + strand, within CCNA_00021 at 21.116 kb on - strand, within CCNA_00021 at 21.116 kb on - strand, within CCNA_00021 at 21.143 kb on + strand, within CCNA_00021 at 21.194 kb on + strand, within CCNA_00021 at 21.201 kb on + strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.250 kb on - strand, within CCNA_00021 at 21.263 kb on + strand, within CCNA_00021 at 21.271 kb on - strand, within CCNA_00021 at 21.280 kb on + strand, within CCNA_00021 at 21.291 kb on + strand, within CCNA_00021 at 21.291 kb on + strand, within CCNA_00021 at 21.293 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.316 kb on - strand, within CCNA_00021
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 18,907 + CCNA_00018 0.16 -1.2 18,920 - CCNA_00018 0.18 +0.6 18,920 - CCNA_00018 0.18 -0.1 18,920 - CCNA_00018 0.18 +0.1 18,928 + CCNA_00018 0.18 -0.0 18,933 + CCNA_00018 0.19 -0.8 18,933 + CCNA_00018 0.19 +0.5 18,933 + CCNA_00018 0.19 -0.5 18,941 - CCNA_00018 0.20 +0.1 18,941 - CCNA_00018 0.20 -0.2 18,941 - CCNA_00018 0.20 -0.0 18,941 - CCNA_00018 0.20 -0.4 18,948 + CCNA_00018 0.20 +0.2 18,963 + CCNA_00018 0.22 -0.0 18,972 + CCNA_00018 0.23 +0.1 18,992 - CCNA_00018 0.24 +0.6 18,992 - CCNA_00018 0.24 -0.8 18,992 - CCNA_00018 0.24 -0.0 19,039 + CCNA_00018 0.29 -0.2 19,072 + CCNA_00018 0.32 -0.8 19,105 + CCNA_00018 0.35 +1.0 19,113 - CCNA_00018 0.36 +0.3 19,113 - CCNA_00018 0.36 +0.5 19,115 + CCNA_00018 0.36 -0.3 19,123 - CCNA_00018 0.37 -0.3 19,133 - CCNA_00018 0.38 +0.5 19,153 + CCNA_00018 0.40 +1.2 19,153 + CCNA_00018 0.40 -0.7 19,192 + CCNA_00018 0.44 -0.9 19,243 + CCNA_00018 0.48 -0.2 19,277 - CCNA_00018 0.52 -0.4 19,299 - CCNA_00018 0.54 +0.1 19,299 - CCNA_00018 0.54 -1.4 19,335 - CCNA_00018 0.57 +0.5 19,342 + CCNA_00018 0.58 +0.2 19,342 + CCNA_00018 0.58 +0.8 19,342 + CCNA_00018 0.58 -0.5 19,345 - CCNA_00018 0.58 -0.6 19,381 - CCNA_00018 0.62 +0.1 19,389 + CCNA_00018 0.62 +0.4 19,389 + CCNA_00018 0.62 +0.6 19,394 + CCNA_00018 0.63 +0.6 19,466 + CCNA_00018 0.70 -0.9 19,469 + CCNA_00018 0.70 -0.4 19,494 + CCNA_00018 0.72 +0.4 19,547 + CCNA_00018 0.77 -0.0 19,609 - CCNA_00018 0.83 +0.1 19,620 + CCNA_00018 0.84 -0.3 19,626 - CCNA_00018 0.85 +1.1 19,640 + CCNA_00018 0.86 -0.5 19,679 + CCNA_00018 0.90 -0.3 19,708 - +1.4 19,724 + -0.4 19,724 + -1.9 19,732 - +0.1 19,743 + -0.0 19,835 - -0.4 19,922 + CCNA_00019 0.17 -0.7 19,945 - CCNA_00019 0.21 +0.3 19,966 + CCNA_00019 0.24 +0.4 20,026 + CCNA_00019 0.33 +0.4 20,046 + CCNA_00019 0.36 +0.8 20,073 + CCNA_00019 0.41 +1.5 20,165 - CCNA_00019 0.55 -0.3 20,198 - CCNA_00019 0.61 +0.3 20,203 - CCNA_00019 0.61 +0.1 20,234 + CCNA_00019 0.66 -0.0 20,236 + CCNA_00019 0.67 -0.9 20,239 + CCNA_00019 0.67 +0.5 20,242 - CCNA_00019 0.67 +0.3 20,247 - CCNA_00019 0.68 +1.0 20,265 - CCNA_00019 0.71 -0.3 20,287 - CCNA_00019 0.75 +0.6 20,317 - CCNA_00019 0.79 +0.1 20,392 + -1.5 20,442 + -1.4 20,678 - CCNA_03911 0.11 +0.8 20,697 - CCNA_03911 0.28 +0.8 20,697 - CCNA_03911 0.28 -0.9 20,724 + CCNA_03911 0.52 -0.6 20,730 + CCNA_03911 0.57 +0.3 20,730 + CCNA_03911 0.57 +1.2 20,770 - +0.0 20,869 - +0.9 20,890 + -0.3 20,901 + +0.5 20,989 - +0.5 21,013 - -0.2 21,091 + CCNA_00021 0.11 +0.0 21,099 - CCNA_00021 0.12 -0.6 21,099 - CCNA_00021 0.12 -0.1 21,108 + CCNA_00021 0.12 +0.5 21,116 - CCNA_00021 0.13 -0.2 21,116 - CCNA_00021 0.13 +0.4 21,143 + CCNA_00021 0.14 +2.6 21,194 + CCNA_00021 0.16 +0.3 21,201 + CCNA_00021 0.16 +0.8 21,209 - CCNA_00021 0.17 -0.2 21,250 - CCNA_00021 0.19 +0.0 21,263 + CCNA_00021 0.19 -0.3 21,271 - CCNA_00021 0.20 -0.1 21,280 + CCNA_00021 0.20 -0.1 21,291 + CCNA_00021 0.21 -0.4 21,291 + CCNA_00021 0.21 +0.0 21,293 - CCNA_00021 0.21 -0.7 21,299 - CCNA_00021 0.21 -0.0 21,316 - CCNA_00021 0.22 +0.0
Or see this region's nucleotide sequence