Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00019

Experiment: PYE with CHIR-090 10 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00018 and CCNA_00019 are separated by 30 nucleotidesCCNA_00019 and CCNA_00020 overlap by 4 nucleotidesCCNA_00020 and CCNA_03911 overlap by 4 nucleotidesCCNA_03911 and CCNA_00021 are separated by 61 nucleotides CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784 _00018 CCNA_00019: CCNA_00019 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 19,815 to 20,447 _00019 CCNA_00020: CCNA_00020 - hypothetical protein, at 20,444 to 20,668 _00020 CCNA_03911: CCNA_03911 - hypothetical protein, at 20,665 to 20,778 _03911 CCNA_00021: CCNA_00021 - putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL, at 20,840 to 23,032 _00021 Position (kb) 19 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 18.907 kb on + strand, within CCNA_00018at 18.920 kb on - strand, within CCNA_00018at 18.920 kb on - strand, within CCNA_00018at 18.920 kb on - strand, within CCNA_00018at 18.928 kb on + strand, within CCNA_00018at 18.933 kb on + strand, within CCNA_00018at 18.933 kb on + strand, within CCNA_00018at 18.933 kb on + strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.941 kb on - strand, within CCNA_00018at 18.948 kb on + strand, within CCNA_00018at 18.963 kb on + strand, within CCNA_00018at 18.972 kb on + strand, within CCNA_00018at 18.992 kb on - strand, within CCNA_00018at 18.992 kb on - strand, within CCNA_00018at 18.992 kb on - strand, within CCNA_00018at 19.039 kb on + strand, within CCNA_00018at 19.072 kb on + strand, within CCNA_00018at 19.105 kb on + strand, within CCNA_00018at 19.113 kb on - strand, within CCNA_00018at 19.113 kb on - strand, within CCNA_00018at 19.115 kb on + strand, within CCNA_00018at 19.123 kb on - strand, within CCNA_00018at 19.133 kb on - strand, within CCNA_00018at 19.153 kb on + strand, within CCNA_00018at 19.153 kb on + strand, within CCNA_00018at 19.192 kb on + strand, within CCNA_00018at 19.243 kb on + strand, within CCNA_00018at 19.277 kb on - strand, within CCNA_00018at 19.299 kb on - strand, within CCNA_00018at 19.299 kb on - strand, within CCNA_00018at 19.335 kb on - strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.342 kb on + strand, within CCNA_00018at 19.345 kb on - strand, within CCNA_00018at 19.381 kb on - strand, within CCNA_00018at 19.389 kb on + strand, within CCNA_00018at 19.389 kb on + strand, within CCNA_00018at 19.394 kb on + strand, within CCNA_00018at 19.466 kb on + strand, within CCNA_00018at 19.469 kb on + strand, within CCNA_00018at 19.494 kb on + strand, within CCNA_00018at 19.547 kb on + strand, within CCNA_00018at 19.609 kb on - strand, within CCNA_00018at 19.620 kb on + strand, within CCNA_00018at 19.626 kb on - strand, within CCNA_00018at 19.640 kb on + strand, within CCNA_00018at 19.679 kb on + strand, within CCNA_00018at 19.708 kb on - strandat 19.724 kb on + strandat 19.724 kb on + strandat 19.732 kb on - strandat 19.743 kb on + strandat 19.835 kb on - strandat 19.922 kb on + strand, within CCNA_00019at 19.945 kb on - strand, within CCNA_00019at 19.966 kb on + strand, within CCNA_00019at 20.026 kb on + strand, within CCNA_00019at 20.046 kb on + strand, within CCNA_00019at 20.073 kb on + strand, within CCNA_00019at 20.165 kb on - strand, within CCNA_00019at 20.198 kb on - strand, within CCNA_00019at 20.203 kb on - strand, within CCNA_00019at 20.234 kb on + strand, within CCNA_00019at 20.236 kb on + strand, within CCNA_00019at 20.239 kb on + strand, within CCNA_00019at 20.242 kb on - strand, within CCNA_00019at 20.247 kb on - strand, within CCNA_00019at 20.265 kb on - strand, within CCNA_00019at 20.287 kb on - strand, within CCNA_00019at 20.317 kb on - strand, within CCNA_00019at 20.392 kb on + strandat 20.442 kb on + strandat 20.678 kb on - strand, within CCNA_03911at 20.697 kb on - strand, within CCNA_03911at 20.697 kb on - strand, within CCNA_03911at 20.724 kb on + strand, within CCNA_03911at 20.730 kb on + strand, within CCNA_03911at 20.730 kb on + strand, within CCNA_03911at 20.770 kb on - strandat 20.869 kb on - strandat 20.890 kb on + strandat 20.901 kb on + strandat 20.989 kb on - strandat 21.013 kb on - strandat 21.091 kb on + strand, within CCNA_00021at 21.099 kb on - strand, within CCNA_00021at 21.099 kb on - strand, within CCNA_00021at 21.108 kb on + strand, within CCNA_00021at 21.116 kb on - strand, within CCNA_00021at 21.116 kb on - strand, within CCNA_00021at 21.143 kb on + strand, within CCNA_00021at 21.194 kb on + strand, within CCNA_00021at 21.201 kb on + strand, within CCNA_00021at 21.209 kb on - strand, within CCNA_00021at 21.250 kb on - strand, within CCNA_00021at 21.263 kb on + strand, within CCNA_00021at 21.271 kb on - strand, within CCNA_00021at 21.280 kb on + strand, within CCNA_00021at 21.291 kb on + strand, within CCNA_00021at 21.291 kb on + strand, within CCNA_00021at 21.293 kb on - strand, within CCNA_00021at 21.299 kb on - strand, within CCNA_00021at 21.316 kb on - strand, within CCNA_00021

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL
remove
18,907 + CCNA_00018 0.16 -1.2
18,920 - CCNA_00018 0.18 +0.6
18,920 - CCNA_00018 0.18 -0.1
18,920 - CCNA_00018 0.18 +0.1
18,928 + CCNA_00018 0.18 -0.0
18,933 + CCNA_00018 0.19 -0.8
18,933 + CCNA_00018 0.19 +0.5
18,933 + CCNA_00018 0.19 -0.5
18,941 - CCNA_00018 0.20 +0.1
18,941 - CCNA_00018 0.20 -0.2
18,941 - CCNA_00018 0.20 -0.0
18,941 - CCNA_00018 0.20 -0.4
18,948 + CCNA_00018 0.20 +0.2
18,963 + CCNA_00018 0.22 -0.0
18,972 + CCNA_00018 0.23 +0.1
18,992 - CCNA_00018 0.24 +0.6
18,992 - CCNA_00018 0.24 -0.8
18,992 - CCNA_00018 0.24 -0.0
19,039 + CCNA_00018 0.29 -0.2
19,072 + CCNA_00018 0.32 -0.8
19,105 + CCNA_00018 0.35 +1.0
19,113 - CCNA_00018 0.36 +0.3
19,113 - CCNA_00018 0.36 +0.5
19,115 + CCNA_00018 0.36 -0.3
19,123 - CCNA_00018 0.37 -0.3
19,133 - CCNA_00018 0.38 +0.5
19,153 + CCNA_00018 0.40 +1.2
19,153 + CCNA_00018 0.40 -0.7
19,192 + CCNA_00018 0.44 -0.9
19,243 + CCNA_00018 0.48 -0.2
19,277 - CCNA_00018 0.52 -0.4
19,299 - CCNA_00018 0.54 +0.1
19,299 - CCNA_00018 0.54 -1.4
19,335 - CCNA_00018 0.57 +0.5
19,342 + CCNA_00018 0.58 +0.2
19,342 + CCNA_00018 0.58 +0.8
19,342 + CCNA_00018 0.58 -0.5
19,345 - CCNA_00018 0.58 -0.6
19,381 - CCNA_00018 0.62 +0.1
19,389 + CCNA_00018 0.62 +0.4
19,389 + CCNA_00018 0.62 +0.6
19,394 + CCNA_00018 0.63 +0.6
19,466 + CCNA_00018 0.70 -0.9
19,469 + CCNA_00018 0.70 -0.4
19,494 + CCNA_00018 0.72 +0.4
19,547 + CCNA_00018 0.77 -0.0
19,609 - CCNA_00018 0.83 +0.1
19,620 + CCNA_00018 0.84 -0.3
19,626 - CCNA_00018 0.85 +1.1
19,640 + CCNA_00018 0.86 -0.5
19,679 + CCNA_00018 0.90 -0.3
19,708 - +1.4
19,724 + -0.4
19,724 + -1.9
19,732 - +0.1
19,743 + -0.0
19,835 - -0.4
19,922 + CCNA_00019 0.17 -0.7
19,945 - CCNA_00019 0.21 +0.3
19,966 + CCNA_00019 0.24 +0.4
20,026 + CCNA_00019 0.33 +0.4
20,046 + CCNA_00019 0.36 +0.8
20,073 + CCNA_00019 0.41 +1.5
20,165 - CCNA_00019 0.55 -0.3
20,198 - CCNA_00019 0.61 +0.3
20,203 - CCNA_00019 0.61 +0.1
20,234 + CCNA_00019 0.66 -0.0
20,236 + CCNA_00019 0.67 -0.9
20,239 + CCNA_00019 0.67 +0.5
20,242 - CCNA_00019 0.67 +0.3
20,247 - CCNA_00019 0.68 +1.0
20,265 - CCNA_00019 0.71 -0.3
20,287 - CCNA_00019 0.75 +0.6
20,317 - CCNA_00019 0.79 +0.1
20,392 + -1.5
20,442 + -1.4
20,678 - CCNA_03911 0.11 +0.8
20,697 - CCNA_03911 0.28 +0.8
20,697 - CCNA_03911 0.28 -0.9
20,724 + CCNA_03911 0.52 -0.6
20,730 + CCNA_03911 0.57 +0.3
20,730 + CCNA_03911 0.57 +1.2
20,770 - +0.0
20,869 - +0.9
20,890 + -0.3
20,901 + +0.5
20,989 - +0.5
21,013 - -0.2
21,091 + CCNA_00021 0.11 +0.0
21,099 - CCNA_00021 0.12 -0.6
21,099 - CCNA_00021 0.12 -0.1
21,108 + CCNA_00021 0.12 +0.5
21,116 - CCNA_00021 0.13 -0.2
21,116 - CCNA_00021 0.13 +0.4
21,143 + CCNA_00021 0.14 +2.6
21,194 + CCNA_00021 0.16 +0.3
21,201 + CCNA_00021 0.16 +0.8
21,209 - CCNA_00021 0.17 -0.2
21,250 - CCNA_00021 0.19 +0.0
21,263 + CCNA_00021 0.19 -0.3
21,271 - CCNA_00021 0.20 -0.1
21,280 + CCNA_00021 0.20 -0.1
21,291 + CCNA_00021 0.21 -0.4
21,291 + CCNA_00021 0.21 +0.0
21,293 - CCNA_00021 0.21 -0.7
21,299 - CCNA_00021 0.21 -0.0
21,316 - CCNA_00021 0.22 +0.0

Or see this region's nucleotide sequence