Experiment: PYE with CHIR-090 10 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00010 and CCNA_00011 are separated by 162 nucleotides CCNA_00011 and CCNA_00012 are separated by 86 nucleotides
CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060
_00010
CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380
_00011
CCNA_00012: CCNA_00012 - DNA mismatch repair protein MutS, at 11,467 to 14,178
_00012
Position (kb) 10
11
12 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 10.062 kb on - strand at 10.063 kb on - strand at 10.133 kb on + strand at 10.740 kb on + strand, within CCNA_00011 at 10.997 kb on - strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.017 kb on + strand, within CCNA_00011 at 11.111 kb on + strand, within CCNA_00011 at 11.123 kb on + strand, within CCNA_00011 at 11.127 kb on + strand, within CCNA_00011 at 11.131 kb on - strand, within CCNA_00011 at 11.131 kb on - strand, within CCNA_00011 at 11.145 kb on - strand, within CCNA_00011 at 11.170 kb on + strand, within CCNA_00011 at 11.178 kb on - strand, within CCNA_00011 at 11.181 kb on + strand, within CCNA_00011 at 11.184 kb on - strand, within CCNA_00011 at 11.297 kb on - strand at 11.344 kb on + strand at 11.352 kb on - strand at 11.363 kb on - strand at 11.374 kb on + strand at 11.374 kb on + strand at 11.454 kb on - strand at 11.454 kb on - strand at 11.462 kb on - strand at 11.478 kb on + strand at 11.482 kb on + strand at 11.486 kb on - strand at 11.492 kb on + strand at 11.500 kb on - strand at 11.501 kb on + strand at 11.570 kb on - strand at 11.607 kb on + strand at 11.633 kb on + strand at 11.638 kb on + strand at 11.638 kb on + strand at 11.646 kb on - strand at 11.646 kb on - strand at 11.650 kb on + strand at 11.658 kb on - strand at 11.738 kb on - strand at 11.775 kb on + strand, within CCNA_00012 at 11.968 kb on + strand, within CCNA_00012 at 11.991 kb on + strand, within CCNA_00012 at 12.010 kb on - strand, within CCNA_00012 at 12.080 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.108 kb on + strand, within CCNA_00012 at 12.115 kb on + strand, within CCNA_00012 at 12.116 kb on + strand, within CCNA_00012 at 12.124 kb on - strand, within CCNA_00012 at 12.133 kb on + strand, within CCNA_00012 at 12.146 kb on - strand, within CCNA_00012 at 12.187 kb on - strand, within CCNA_00012 at 12.335 kb on + strand, within CCNA_00012 at 12.357 kb on + strand, within CCNA_00012
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 10 ug/mL remove 10,062 - -0.1 10,063 - +0.1 10,133 + +0.2 10,740 + CCNA_00011 0.45 -4.3 10,997 - CCNA_00011 0.67 -1.6 11,012 + CCNA_00011 0.68 -1.9 11,012 + CCNA_00011 0.68 -0.9 11,017 + CCNA_00011 0.69 -1.6 11,111 + CCNA_00011 0.77 -0.4 11,123 + CCNA_00011 0.78 -0.9 11,127 + CCNA_00011 0.78 -0.1 11,131 - CCNA_00011 0.78 +0.8 11,131 - CCNA_00011 0.78 +0.1 11,145 - CCNA_00011 0.80 -1.7 11,170 + CCNA_00011 0.82 -0.3 11,178 - CCNA_00011 0.82 -3.0 11,181 + CCNA_00011 0.83 +0.2 11,184 - CCNA_00011 0.83 -1.0 11,297 - -0.0 11,344 + +0.2 11,352 - +0.0 11,363 - +0.6 11,374 + +3.1 11,374 + +0.6 11,454 - +1.0 11,454 - -0.0 11,462 - -1.3 11,478 + -0.6 11,482 + +0.5 11,486 - -0.3 11,492 + +0.5 11,500 - -0.4 11,501 + +0.6 11,570 - -0.2 11,607 + +0.9 11,633 + +0.2 11,638 + +0.4 11,638 + -0.2 11,646 - -1.1 11,646 - -1.0 11,650 + -0.4 11,658 - -0.6 11,738 - -1.4 11,775 + CCNA_00012 0.11 +1.2 11,968 + CCNA_00012 0.18 -0.9 11,991 + CCNA_00012 0.19 +0.4 12,010 - CCNA_00012 0.20 -0.6 12,080 + CCNA_00012 0.23 +0.1 12,098 + CCNA_00012 0.23 +0.5 12,098 + CCNA_00012 0.23 -0.1 12,098 + CCNA_00012 0.23 +0.3 12,098 + CCNA_00012 0.23 +0.6 12,108 + CCNA_00012 0.24 -0.0 12,115 + CCNA_00012 0.24 -0.1 12,116 + CCNA_00012 0.24 -0.3 12,124 - CCNA_00012 0.24 +0.0 12,133 + CCNA_00012 0.25 -0.1 12,146 - CCNA_00012 0.25 +0.4 12,187 - CCNA_00012 0.27 +0.7 12,335 + CCNA_00012 0.32 +2.5 12,357 + CCNA_00012 0.33 +0.1
Or see this region's nucleotide sequence