Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19630

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19625 and CA264_19630 are separated by 133 nucleotidesCA264_19630 and CA264_19635 are separated by 39 nucleotidesCA264_19635 and CA264_19640 are separated by 62 nucleotides CA264_19625: CA264_19625 - DNA mismatch repair protein MutS, at 4,533,101 to 4,534,915 _19625 CA264_19630: CA264_19630 - hypothetical protein, at 4,535,049 to 4,535,291 _19630 CA264_19635: CA264_19635 - hypothetical protein, at 4,535,331 to 4,536,194 _19635 CA264_19640: CA264_19640 - TraB/GumN family protein, at 4,536,257 to 4,536,982 _19640 Position (kb) 4535 4536Strain fitness (log2 ratio) -2 -1 0 1at 4534.087 kb on - strand, within CA264_19625at 4534.222 kb on + strand, within CA264_19625at 4534.223 kb on - strand, within CA264_19625at 4534.381 kb on + strand, within CA264_19625at 4534.393 kb on + strand, within CA264_19625at 4534.480 kb on + strand, within CA264_19625at 4534.481 kb on - strand, within CA264_19625at 4534.481 kb on - strand, within CA264_19625at 4534.506 kb on - strand, within CA264_19625at 4534.506 kb on - strand, within CA264_19625at 4534.594 kb on + strand, within CA264_19625at 4534.619 kb on + strand, within CA264_19625at 4534.620 kb on - strand, within CA264_19625at 4534.831 kb on + strandat 4534.832 kb on - strandat 4534.832 kb on - strandat 4535.025 kb on + strandat 4535.043 kb on - strandat 4535.048 kb on + strandat 4535.049 kb on - strandat 4535.057 kb on - strandat 4535.068 kb on + strandat 4535.069 kb on - strandat 4535.115 kb on + strand, within CA264_19630at 4535.118 kb on - strand, within CA264_19630at 4535.206 kb on + strand, within CA264_19630at 4535.207 kb on - strand, within CA264_19630at 4535.266 kb on + strand, within CA264_19630at 4535.270 kb on + strandat 4535.271 kb on - strandat 4535.323 kb on - strandat 4535.323 kb on - strandat 4535.325 kb on + strandat 4535.326 kb on - strandat 4535.326 kb on - strandat 4535.339 kb on - strandat 4535.343 kb on - strandat 4535.343 kb on - strandat 4535.346 kb on + strandat 4535.347 kb on - strandat 4535.350 kb on + strandat 4535.351 kb on - strandat 4535.363 kb on + strandat 4535.372 kb on + strandat 4535.393 kb on - strandat 4535.393 kb on - strandat 4535.433 kb on - strand, within CA264_19635at 4535.480 kb on - strand, within CA264_19635at 4535.490 kb on + strand, within CA264_19635at 4535.490 kb on + strand, within CA264_19635at 4535.491 kb on - strand, within CA264_19635at 4535.519 kb on + strand, within CA264_19635at 4535.530 kb on + strand, within CA264_19635at 4535.606 kb on + strand, within CA264_19635at 4535.607 kb on - strand, within CA264_19635at 4535.613 kb on - strand, within CA264_19635at 4535.613 kb on - strand, within CA264_19635at 4535.756 kb on + strand, within CA264_19635at 4535.785 kb on + strand, within CA264_19635at 4535.785 kb on + strand, within CA264_19635at 4535.808 kb on - strand, within CA264_19635at 4535.820 kb on + strand, within CA264_19635at 4535.891 kb on + strand, within CA264_19635at 4535.892 kb on - strand, within CA264_19635at 4535.906 kb on + strand, within CA264_19635at 4535.906 kb on + strand, within CA264_19635at 4535.907 kb on - strand, within CA264_19635at 4535.907 kb on - strand, within CA264_19635at 4535.954 kb on + strand, within CA264_19635at 4535.955 kb on - strand, within CA264_19635at 4535.958 kb on + strand, within CA264_19635at 4535.959 kb on - strand, within CA264_19635at 4536.000 kb on + strand, within CA264_19635at 4536.000 kb on + strand, within CA264_19635at 4536.000 kb on + strand, within CA264_19635at 4536.001 kb on - strand, within CA264_19635at 4536.026 kb on + strand, within CA264_19635at 4536.027 kb on - strand, within CA264_19635at 4536.027 kb on - strand, within CA264_19635at 4536.041 kb on - strand, within CA264_19635at 4536.202 kb on + strandat 4536.213 kb on - strandat 4536.213 kb on - strandat 4536.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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4,534,087 - CA264_19625 0.54 -1.1
4,534,222 + CA264_19625 0.62 -0.1
4,534,223 - CA264_19625 0.62 -0.1
4,534,381 + CA264_19625 0.71 -0.4
4,534,393 + CA264_19625 0.71 -0.5
4,534,480 + CA264_19625 0.76 +0.3
4,534,481 - CA264_19625 0.76 -0.2
4,534,481 - CA264_19625 0.76 -0.0
4,534,506 - CA264_19625 0.77 -0.1
4,534,506 - CA264_19625 0.77 -0.0
4,534,594 + CA264_19625 0.82 +0.3
4,534,619 + CA264_19625 0.84 +0.1
4,534,620 - CA264_19625 0.84 -1.2
4,534,831 + -0.1
4,534,832 - -0.4
4,534,832 - -1.0
4,535,025 + -0.2
4,535,043 - +0.3
4,535,048 + -0.5
4,535,049 - +0.1
4,535,057 - +0.3
4,535,068 + -1.0
4,535,069 - -0.5
4,535,115 + CA264_19630 0.27 -0.0
4,535,118 - CA264_19630 0.28 -1.1
4,535,206 + CA264_19630 0.65 -0.4
4,535,207 - CA264_19630 0.65 +0.9
4,535,266 + CA264_19630 0.89 +1.3
4,535,270 + -0.3
4,535,271 - +0.4
4,535,323 - -0.1
4,535,323 - -1.8
4,535,325 + +1.2
4,535,326 - -1.4
4,535,326 - -0.1
4,535,339 - -0.3
4,535,343 - +0.4
4,535,343 - +0.1
4,535,346 + -0.2
4,535,347 - -0.7
4,535,350 + -0.3
4,535,351 - -0.5
4,535,363 + -0.5
4,535,372 + +0.3
4,535,393 - +0.4
4,535,393 - +0.3
4,535,433 - CA264_19635 0.12 +1.7
4,535,480 - CA264_19635 0.17 -0.1
4,535,490 + CA264_19635 0.18 -0.0
4,535,490 + CA264_19635 0.18 -1.1
4,535,491 - CA264_19635 0.19 +0.2
4,535,519 + CA264_19635 0.22 +0.7
4,535,530 + CA264_19635 0.23 -0.0
4,535,606 + CA264_19635 0.32 -1.0
4,535,607 - CA264_19635 0.32 -0.4
4,535,613 - CA264_19635 0.33 -0.4
4,535,613 - CA264_19635 0.33 -0.3
4,535,756 + CA264_19635 0.49 +0.8
4,535,785 + CA264_19635 0.53 -0.2
4,535,785 + CA264_19635 0.53 -0.4
4,535,808 - CA264_19635 0.55 -0.4
4,535,820 + CA264_19635 0.57 -0.0
4,535,891 + CA264_19635 0.65 +0.6
4,535,892 - CA264_19635 0.65 +1.6
4,535,906 + CA264_19635 0.67 +0.0
4,535,906 + CA264_19635 0.67 -2.4
4,535,907 - CA264_19635 0.67 +0.2
4,535,907 - CA264_19635 0.67 -1.1
4,535,954 + CA264_19635 0.72 +0.0
4,535,955 - CA264_19635 0.72 -0.2
4,535,958 + CA264_19635 0.73 -0.6
4,535,959 - CA264_19635 0.73 -0.1
4,536,000 + CA264_19635 0.77 -0.6
4,536,000 + CA264_19635 0.77 +0.7
4,536,000 + CA264_19635 0.77 -0.1
4,536,001 - CA264_19635 0.78 -0.2
4,536,026 + CA264_19635 0.80 -0.8
4,536,027 - CA264_19635 0.81 -0.3
4,536,027 - CA264_19635 0.81 -1.3
4,536,041 - CA264_19635 0.82 -0.8
4,536,202 + -1.2
4,536,213 - +0.4
4,536,213 - -0.2
4,536,247 - -0.1

Or see this region's nucleotide sequence