Experiment: m.b. Cobalt chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19615 and CA264_19620 are separated by 112 nucleotides CA264_19620 and CA264_19625 are separated by 19 nucleotides CA264_19625 and CA264_19630 are separated by 133 nucleotides CA264_19630 and CA264_19635 are separated by 39 nucleotides
CA264_19615: CA264_19615 - hypothetical protein, at 4,531,581 to 4,532,540
_19615
CA264_19620: CA264_19620 - 2-aminomuconate deaminase, at 4,532,653 to 4,533,081
_19620
CA264_19625: CA264_19625 - DNA mismatch repair protein MutS, at 4,533,101 to 4,534,915
_19625
CA264_19630: CA264_19630 - hypothetical protein, at 4,535,049 to 4,535,291
_19630
CA264_19635: CA264_19635 - hypothetical protein, at 4,535,331 to 4,536,194
_19635
Position (kb)
4533
4534
4535 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4532.124 kb on + strand, within CA264_19615 at 4532.259 kb on + strand, within CA264_19615 at 4532.374 kb on + strand, within CA264_19615 at 4532.442 kb on + strand, within CA264_19615 at 4532.444 kb on + strand, within CA264_19615 at 4532.531 kb on + strand at 4532.552 kb on + strand at 4532.559 kb on - strand at 4532.643 kb on - strand at 4532.672 kb on + strand at 4532.828 kb on - strand, within CA264_19620 at 4532.920 kb on - strand, within CA264_19620 at 4532.959 kb on + strand, within CA264_19620 at 4532.972 kb on - strand, within CA264_19620 at 4532.980 kb on + strand, within CA264_19620 at 4533.014 kb on + strand, within CA264_19620 at 4533.014 kb on + strand, within CA264_19620 at 4533.020 kb on + strand, within CA264_19620 at 4533.080 kb on - strand at 4533.080 kb on - strand at 4533.085 kb on - strand at 4533.096 kb on - strand at 4533.124 kb on - strand at 4533.236 kb on + strand at 4533.239 kb on + strand at 4533.340 kb on + strand, within CA264_19625 at 4533.345 kb on - strand, within CA264_19625 at 4533.396 kb on + strand, within CA264_19625 at 4533.439 kb on - strand, within CA264_19625 at 4533.472 kb on + strand, within CA264_19625 at 4533.540 kb on + strand, within CA264_19625 at 4533.665 kb on + strand, within CA264_19625 at 4533.666 kb on - strand, within CA264_19625 at 4533.888 kb on - strand, within CA264_19625 at 4533.898 kb on + strand, within CA264_19625 at 4533.898 kb on + strand, within CA264_19625 at 4533.899 kb on - strand, within CA264_19625 at 4533.899 kb on - strand, within CA264_19625 at 4533.899 kb on - strand, within CA264_19625 at 4533.903 kb on + strand, within CA264_19625 at 4533.903 kb on + strand, within CA264_19625 at 4533.911 kb on + strand, within CA264_19625 at 4533.930 kb on - strand, within CA264_19625 at 4534.033 kb on + strand, within CA264_19625 at 4534.034 kb on - strand, within CA264_19625 at 4534.034 kb on - strand, within CA264_19625 at 4534.034 kb on - strand, within CA264_19625 at 4534.035 kb on + strand, within CA264_19625 at 4534.036 kb on - strand, within CA264_19625 at 4534.036 kb on - strand, within CA264_19625 at 4534.087 kb on - strand, within CA264_19625 at 4534.222 kb on + strand, within CA264_19625 at 4534.223 kb on - strand, within CA264_19625 at 4534.381 kb on + strand, within CA264_19625 at 4534.393 kb on + strand, within CA264_19625 at 4534.480 kb on + strand, within CA264_19625 at 4534.481 kb on - strand, within CA264_19625 at 4534.481 kb on - strand, within CA264_19625 at 4534.506 kb on - strand, within CA264_19625 at 4534.506 kb on - strand, within CA264_19625 at 4534.594 kb on + strand, within CA264_19625 at 4534.619 kb on + strand, within CA264_19625 at 4534.620 kb on - strand, within CA264_19625 at 4534.831 kb on + strand at 4534.832 kb on - strand at 4534.832 kb on - strand at 4535.025 kb on + strand at 4535.043 kb on - strand at 4535.048 kb on + strand at 4535.049 kb on - strand at 4535.057 kb on - strand at 4535.068 kb on + strand at 4535.069 kb on - strand at 4535.115 kb on + strand, within CA264_19630 at 4535.118 kb on - strand, within CA264_19630 at 4535.206 kb on + strand, within CA264_19630 at 4535.207 kb on - strand, within CA264_19630 at 4535.266 kb on + strand, within CA264_19630 at 4535.270 kb on + strand at 4535.271 kb on - strand at 4535.323 kb on - strand at 4535.323 kb on - strand at 4535.325 kb on + strand at 4535.326 kb on - strand at 4535.326 kb on - strand at 4535.339 kb on - strand at 4535.343 kb on - strand at 4535.343 kb on - strand at 4535.346 kb on + strand at 4535.347 kb on - strand at 4535.350 kb on + strand at 4535.351 kb on - strand at 4535.363 kb on + strand at 4535.372 kb on + strand at 4535.393 kb on - strand at 4535.393 kb on - strand at 4535.433 kb on - strand, within CA264_19635 at 4535.480 kb on - strand, within CA264_19635 at 4535.490 kb on + strand, within CA264_19635 at 4535.490 kb on + strand, within CA264_19635 at 4535.491 kb on - strand, within CA264_19635 at 4535.519 kb on + strand, within CA264_19635 at 4535.530 kb on + strand, within CA264_19635 at 4535.606 kb on + strand, within CA264_19635 at 4535.607 kb on - strand, within CA264_19635 at 4535.613 kb on - strand, within CA264_19635 at 4535.613 kb on - strand, within CA264_19635 at 4535.756 kb on + strand, within CA264_19635 at 4535.785 kb on + strand, within CA264_19635 at 4535.785 kb on + strand, within CA264_19635 at 4535.808 kb on - strand, within CA264_19635 at 4535.820 kb on + strand, within CA264_19635 at 4535.891 kb on + strand, within CA264_19635 at 4535.892 kb on - strand, within CA264_19635 at 4535.906 kb on + strand, within CA264_19635 at 4535.906 kb on + strand, within CA264_19635 at 4535.907 kb on - strand, within CA264_19635 at 4535.907 kb on - strand, within CA264_19635
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM remove 4,532,124 + CA264_19615 0.57 -1.8 4,532,259 + CA264_19615 0.71 -1.7 4,532,374 + CA264_19615 0.83 -1.5 4,532,442 + CA264_19615 0.90 +1.0 4,532,444 + CA264_19615 0.90 -3.0 4,532,531 + -1.6 4,532,552 + -0.0 4,532,559 - +0.6 4,532,643 - -0.1 4,532,672 + -0.5 4,532,828 - CA264_19620 0.41 -0.7 4,532,920 - CA264_19620 0.62 +2.1 4,532,959 + CA264_19620 0.71 -1.1 4,532,972 - CA264_19620 0.74 +0.3 4,532,980 + CA264_19620 0.76 -0.2 4,533,014 + CA264_19620 0.84 -0.3 4,533,014 + CA264_19620 0.84 -0.1 4,533,020 + CA264_19620 0.86 -1.0 4,533,080 - +0.0 4,533,080 - -0.2 4,533,085 - -0.8 4,533,096 - +0.4 4,533,124 - +0.5 4,533,236 + -0.6 4,533,239 + -0.3 4,533,340 + CA264_19625 0.13 +1.1 4,533,345 - CA264_19625 0.13 -0.5 4,533,396 + CA264_19625 0.16 +1.8 4,533,439 - CA264_19625 0.19 -2.3 4,533,472 + CA264_19625 0.20 -1.4 4,533,540 + CA264_19625 0.24 +0.1 4,533,665 + CA264_19625 0.31 -0.1 4,533,666 - CA264_19625 0.31 +0.1 4,533,888 - CA264_19625 0.43 -0.3 4,533,898 + CA264_19625 0.44 -0.3 4,533,898 + CA264_19625 0.44 -0.4 4,533,899 - CA264_19625 0.44 +1.4 4,533,899 - CA264_19625 0.44 -0.5 4,533,899 - CA264_19625 0.44 -0.9 4,533,903 + CA264_19625 0.44 -1.1 4,533,903 + CA264_19625 0.44 +0.3 4,533,911 + CA264_19625 0.45 -0.7 4,533,930 - CA264_19625 0.46 -0.3 4,534,033 + CA264_19625 0.51 -0.3 4,534,034 - CA264_19625 0.51 -0.1 4,534,034 - CA264_19625 0.51 +0.1 4,534,034 - CA264_19625 0.51 -0.4 4,534,035 + CA264_19625 0.51 -0.0 4,534,036 - CA264_19625 0.52 -0.5 4,534,036 - CA264_19625 0.52 +0.7 4,534,087 - CA264_19625 0.54 -1.1 4,534,222 + CA264_19625 0.62 -0.1 4,534,223 - CA264_19625 0.62 -0.1 4,534,381 + CA264_19625 0.71 -0.4 4,534,393 + CA264_19625 0.71 -0.5 4,534,480 + CA264_19625 0.76 +0.3 4,534,481 - CA264_19625 0.76 -0.2 4,534,481 - CA264_19625 0.76 -0.0 4,534,506 - CA264_19625 0.77 -0.1 4,534,506 - CA264_19625 0.77 -0.0 4,534,594 + CA264_19625 0.82 +0.3 4,534,619 + CA264_19625 0.84 +0.1 4,534,620 - CA264_19625 0.84 -1.2 4,534,831 + -0.1 4,534,832 - -0.4 4,534,832 - -1.0 4,535,025 + -0.2 4,535,043 - +0.3 4,535,048 + -0.5 4,535,049 - +0.1 4,535,057 - +0.3 4,535,068 + -1.0 4,535,069 - -0.5 4,535,115 + CA264_19630 0.27 -0.0 4,535,118 - CA264_19630 0.28 -1.1 4,535,206 + CA264_19630 0.65 -0.4 4,535,207 - CA264_19630 0.65 +0.9 4,535,266 + CA264_19630 0.89 +1.3 4,535,270 + -0.3 4,535,271 - +0.4 4,535,323 - -0.1 4,535,323 - -1.8 4,535,325 + +1.2 4,535,326 - -1.4 4,535,326 - -0.1 4,535,339 - -0.3 4,535,343 - +0.4 4,535,343 - +0.1 4,535,346 + -0.2 4,535,347 - -0.7 4,535,350 + -0.3 4,535,351 - -0.5 4,535,363 + -0.5 4,535,372 + +0.3 4,535,393 - +0.4 4,535,393 - +0.3 4,535,433 - CA264_19635 0.12 +1.7 4,535,480 - CA264_19635 0.17 -0.1 4,535,490 + CA264_19635 0.18 -0.0 4,535,490 + CA264_19635 0.18 -1.1 4,535,491 - CA264_19635 0.19 +0.2 4,535,519 + CA264_19635 0.22 +0.7 4,535,530 + CA264_19635 0.23 -0.0 4,535,606 + CA264_19635 0.32 -1.0 4,535,607 - CA264_19635 0.32 -0.4 4,535,613 - CA264_19635 0.33 -0.4 4,535,613 - CA264_19635 0.33 -0.3 4,535,756 + CA264_19635 0.49 +0.8 4,535,785 + CA264_19635 0.53 -0.2 4,535,785 + CA264_19635 0.53 -0.4 4,535,808 - CA264_19635 0.55 -0.4 4,535,820 + CA264_19635 0.57 -0.0 4,535,891 + CA264_19635 0.65 +0.6 4,535,892 - CA264_19635 0.65 +1.6 4,535,906 + CA264_19635 0.67 +0.0 4,535,906 + CA264_19635 0.67 -2.4 4,535,907 - CA264_19635 0.67 +0.2 4,535,907 - CA264_19635 0.67 -1.1
Or see this region's nucleotide sequence