Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18635

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18630 and CA264_18635 are separated by 36 nucleotidesCA264_18635 and CA264_18640 are separated by 83 nucleotidesCA264_18640 and CA264_18645 are separated by 145 nucleotides CA264_18630: CA264_18630 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 4,332,090 to 4,333,613 _18630 CA264_18635: CA264_18635 - phosphoribosylglycinamide formyltransferase, at 4,333,650 to 4,334,237 _18635 CA264_18640: CA264_18640 - ATPase, at 4,334,321 to 4,334,704 _18640 CA264_18645: CA264_18645 - haloacid dehalogenase, at 4,334,850 to 4,335,674 _18645 Position (kb) 4333 4334 4335Strain fitness (log2 ratio) -2 -1 0 1at 4332.760 kb on + strand, within CA264_18630at 4332.938 kb on - strand, within CA264_18630at 4332.993 kb on + strand, within CA264_18630at 4333.144 kb on - strand, within CA264_18630at 4333.147 kb on - strand, within CA264_18630at 4333.147 kb on - strand, within CA264_18630at 4333.333 kb on + strand, within CA264_18630at 4333.430 kb on + strand, within CA264_18630at 4333.455 kb on + strand, within CA264_18630at 4333.513 kb on + strandat 4333.513 kb on + strandat 4333.513 kb on + strandat 4333.514 kb on - strandat 4333.514 kb on - strandat 4333.573 kb on + strandat 4333.637 kb on - strandat 4333.651 kb on + strandat 4333.678 kb on - strandat 4333.807 kb on + strand, within CA264_18635at 4333.891 kb on + strand, within CA264_18635at 4333.891 kb on + strand, within CA264_18635at 4333.892 kb on - strand, within CA264_18635at 4333.892 kb on - strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4334.102 kb on - strand, within CA264_18635at 4334.228 kb on + strandat 4334.229 kb on - strandat 4334.252 kb on - strandat 4334.267 kb on - strandat 4334.276 kb on + strandat 4334.283 kb on + strandat 4334.284 kb on - strandat 4334.284 kb on - strandat 4334.304 kb on + strandat 4334.304 kb on + strandat 4334.358 kb on + strandat 4334.440 kb on - strand, within CA264_18640at 4334.590 kb on + strand, within CA264_18640at 4334.652 kb on + strand, within CA264_18640at 4334.652 kb on + strand, within CA264_18640at 4334.682 kb on + strandat 4334.685 kb on + strandat 4334.712 kb on + strandat 4334.712 kb on + strandat 4334.713 kb on - strandat 4334.713 kb on - strandat 4334.722 kb on + strandat 4334.722 kb on + strandat 4334.723 kb on - strandat 4334.723 kb on - strandat 4334.733 kb on + strandat 4334.734 kb on - strandat 4334.777 kb on + strandat 4334.780 kb on - strandat 4334.804 kb on + strandat 4334.804 kb on + strandat 4334.809 kb on + strandat 4334.809 kb on + strandat 4334.832 kb on - strandat 4334.834 kb on + strandat 4334.838 kb on + strandat 4334.839 kb on - strandat 4334.839 kb on - strandat 4334.839 kb on - strandat 4334.839 kb on - strandat 4334.869 kb on - strandat 4334.870 kb on + strandat 4334.871 kb on - strandat 4334.880 kb on + strandat 4334.892 kb on + strandat 4334.892 kb on + strandat 4334.892 kb on + strandat 4334.986 kb on - strand, within CA264_18645at 4334.986 kb on - strand, within CA264_18645at 4334.995 kb on + strand, within CA264_18645at 4334.996 kb on - strand, within CA264_18645at 4335.035 kb on + strand, within CA264_18645at 4335.036 kb on - strand, within CA264_18645at 4335.104 kb on - strand, within CA264_18645at 4335.142 kb on + strand, within CA264_18645at 4335.142 kb on + strand, within CA264_18645at 4335.142 kb on + strand, within CA264_18645at 4335.142 kb on + strand, within CA264_18645at 4335.142 kb on + strand, within CA264_18645at 4335.143 kb on - strand, within CA264_18645at 4335.143 kb on - strand, within CA264_18645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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4,332,760 + CA264_18630 0.44 -0.9
4,332,938 - CA264_18630 0.56 -0.7
4,332,993 + CA264_18630 0.59 -0.4
4,333,144 - CA264_18630 0.69 +0.1
4,333,147 - CA264_18630 0.69 -1.3
4,333,147 - CA264_18630 0.69 +0.2
4,333,333 + CA264_18630 0.82 -0.6
4,333,430 + CA264_18630 0.88 -0.1
4,333,455 + CA264_18630 0.90 -0.1
4,333,513 + +0.6
4,333,513 + -0.3
4,333,513 + -0.4
4,333,514 - +0.8
4,333,514 - +0.1
4,333,573 + +0.3
4,333,637 - +0.7
4,333,651 + -0.2
4,333,678 - +1.0
4,333,807 + CA264_18635 0.27 -0.4
4,333,891 + CA264_18635 0.41 +0.9
4,333,891 + CA264_18635 0.41 -0.5
4,333,892 - CA264_18635 0.41 +0.1
4,333,892 - CA264_18635 0.41 -1.3
4,333,914 + CA264_18635 0.45 -0.2
4,333,914 + CA264_18635 0.45 -0.2
4,333,914 + CA264_18635 0.45 +0.2
4,333,914 + CA264_18635 0.45 -0.2
4,334,102 - CA264_18635 0.77 -0.0
4,334,228 + -0.3
4,334,229 - +0.4
4,334,252 - -1.1
4,334,267 - -0.1
4,334,276 + -0.3
4,334,283 + -0.3
4,334,284 - -0.9
4,334,284 - -0.1
4,334,304 + -0.3
4,334,304 + +0.1
4,334,358 + -0.2
4,334,440 - CA264_18640 0.31 +0.1
4,334,590 + CA264_18640 0.70 -0.6
4,334,652 + CA264_18640 0.86 -0.5
4,334,652 + CA264_18640 0.86 -1.8
4,334,682 + +0.0
4,334,685 + -0.4
4,334,712 + +1.1
4,334,712 + -1.2
4,334,713 - -0.4
4,334,713 - -0.4
4,334,722 + -0.4
4,334,722 + -0.3
4,334,723 - +1.0
4,334,723 - -1.4
4,334,733 + -0.1
4,334,734 - -0.4
4,334,777 + -0.2
4,334,780 - +0.3
4,334,804 + -0.2
4,334,804 + -0.0
4,334,809 + +0.0
4,334,809 + +0.5
4,334,832 - -0.3
4,334,834 + -0.7
4,334,838 + -0.4
4,334,839 - +0.6
4,334,839 - +0.4
4,334,839 - +0.2
4,334,839 - +1.7
4,334,869 - -1.1
4,334,870 + -0.4
4,334,871 - -0.2
4,334,880 + +0.1
4,334,892 + -0.1
4,334,892 + -0.7
4,334,892 + -0.0
4,334,986 - CA264_18645 0.16 -1.7
4,334,986 - CA264_18645 0.16 -0.3
4,334,995 + CA264_18645 0.18 -0.4
4,334,996 - CA264_18645 0.18 -0.8
4,335,035 + CA264_18645 0.22 -2.4
4,335,036 - CA264_18645 0.23 -1.2
4,335,104 - CA264_18645 0.31 -1.5
4,335,142 + CA264_18645 0.35 -0.4
4,335,142 + CA264_18645 0.35 -0.1
4,335,142 + CA264_18645 0.35 -0.9
4,335,142 + CA264_18645 0.35 -0.5
4,335,142 + CA264_18645 0.35 -0.7
4,335,143 - CA264_18645 0.36 -1.2
4,335,143 - CA264_18645 0.36 -0.9

Or see this region's nucleotide sequence