Experiment: m.b. Cobalt chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18545 and CA264_18550 are separated by 321 nucleotides CA264_18550 and CA264_18555 are separated by 81 nucleotides CA264_18555 and CA264_18560 are separated by 202 nucleotides CA264_18560 and CA264_18565 are separated by 2 nucleotides
CA264_18545: CA264_18545 - DNA mismatch repair protein MutS, at 4,314,652 to 4,317,285
_18545
CA264_18550: CA264_18550 - tRNA-Gly, at 4,317,607 to 4,317,679
_18550
CA264_18555: CA264_18555 - tRNA-Leu, at 4,317,761 to 4,317,844
_18555
CA264_18560: CA264_18560 - hypothetical protein, at 4,318,047 to 4,319,141
_18560
CA264_18565: CA264_18565 - hypothetical protein, at 4,319,144 to 4,320,349
_18565
Position (kb)
4318
4319
4320 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4317.415 kb on - strand at 4317.415 kb on - strand at 4317.872 kb on + strand at 4317.984 kb on - strand at 4318.117 kb on + strand at 4318.118 kb on - strand at 4318.123 kb on + strand at 4318.124 kb on - strand at 4318.126 kb on - strand at 4318.130 kb on - strand at 4318.137 kb on + strand at 4318.138 kb on - strand at 4318.141 kb on - strand at 4318.168 kb on + strand, within CA264_18560 at 4318.217 kb on + strand, within CA264_18560 at 4318.217 kb on + strand, within CA264_18560 at 4318.218 kb on - strand, within CA264_18560 at 4318.218 kb on - strand, within CA264_18560 at 4318.318 kb on + strand, within CA264_18560 at 4318.319 kb on - strand, within CA264_18560 at 4318.332 kb on + strand, within CA264_18560 at 4318.332 kb on + strand, within CA264_18560 at 4318.335 kb on + strand, within CA264_18560 at 4318.336 kb on - strand at 4318.378 kb on + strand, within CA264_18560 at 4318.379 kb on - strand, within CA264_18560 at 4318.393 kb on + strand, within CA264_18560 at 4318.431 kb on - strand, within CA264_18560 at 4318.457 kb on + strand, within CA264_18560 at 4318.474 kb on + strand, within CA264_18560 at 4318.500 kb on - strand, within CA264_18560 at 4318.500 kb on - strand, within CA264_18560 at 4318.542 kb on - strand, within CA264_18560 at 4318.563 kb on - strand, within CA264_18560 at 4318.576 kb on + strand, within CA264_18560 at 4318.642 kb on + strand, within CA264_18560 at 4318.649 kb on - strand, within CA264_18560 at 4318.748 kb on + strand, within CA264_18560 at 4318.749 kb on - strand, within CA264_18560 at 4318.769 kb on + strand, within CA264_18560 at 4318.769 kb on + strand, within CA264_18560 at 4318.771 kb on + strand, within CA264_18560 at 4318.771 kb on + strand, within CA264_18560 at 4318.827 kb on - strand, within CA264_18560 at 4318.877 kb on + strand, within CA264_18560 at 4318.951 kb on + strand, within CA264_18560 at 4318.961 kb on + strand, within CA264_18560 at 4318.962 kb on - strand, within CA264_18560 at 4318.964 kb on + strand, within CA264_18560 at 4318.965 kb on - strand, within CA264_18560 at 4318.994 kb on + strand, within CA264_18560 at 4319.002 kb on + strand, within CA264_18560 at 4319.003 kb on - strand, within CA264_18560 at 4319.011 kb on + strand, within CA264_18560 at 4319.012 kb on - strand, within CA264_18560 at 4319.016 kb on + strand, within CA264_18560 at 4319.024 kb on + strand, within CA264_18560 at 4319.025 kb on - strand, within CA264_18560 at 4319.076 kb on + strand at 4319.076 kb on + strand at 4319.077 kb on - strand at 4319.080 kb on + strand at 4319.080 kb on + strand at 4319.081 kb on - strand at 4319.081 kb on - strand at 4319.081 kb on - strand at 4319.150 kb on - strand at 4319.161 kb on + strand at 4319.161 kb on + strand at 4319.226 kb on + strand at 4319.227 kb on - strand at 4319.256 kb on + strand at 4319.273 kb on + strand, within CA264_18565 at 4319.273 kb on + strand, within CA264_18565 at 4319.280 kb on + strand, within CA264_18565 at 4319.281 kb on - strand, within CA264_18565 at 4319.287 kb on + strand, within CA264_18565 at 4319.288 kb on - strand, within CA264_18565 at 4319.297 kb on + strand, within CA264_18565 at 4319.300 kb on - strand, within CA264_18565 at 4319.310 kb on + strand, within CA264_18565 at 4319.310 kb on + strand, within CA264_18565 at 4319.311 kb on - strand, within CA264_18565 at 4319.334 kb on + strand, within CA264_18565 at 4319.335 kb on - strand, within CA264_18565 at 4319.337 kb on - strand, within CA264_18565 at 4319.337 kb on - strand, within CA264_18565 at 4319.352 kb on + strand, within CA264_18565 at 4319.366 kb on + strand, within CA264_18565 at 4319.367 kb on - strand, within CA264_18565 at 4319.367 kb on - strand, within CA264_18565 at 4319.367 kb on - strand, within CA264_18565 at 4319.368 kb on + strand, within CA264_18565 at 4319.368 kb on + strand, within CA264_18565 at 4319.368 kb on + strand, within CA264_18565 at 4319.369 kb on - strand, within CA264_18565 at 4319.371 kb on - strand, within CA264_18565 at 4319.400 kb on - strand, within CA264_18565 at 4319.405 kb on - strand, within CA264_18565 at 4319.424 kb on + strand, within CA264_18565 at 4319.425 kb on - strand, within CA264_18565 at 4319.453 kb on - strand, within CA264_18565 at 4319.550 kb on + strand, within CA264_18565 at 4319.551 kb on - strand, within CA264_18565 at 4319.552 kb on + strand, within CA264_18565 at 4319.553 kb on - strand, within CA264_18565 at 4319.557 kb on + strand, within CA264_18565 at 4319.557 kb on + strand, within CA264_18565 at 4319.575 kb on - strand, within CA264_18565 at 4319.594 kb on - strand, within CA264_18565 at 4319.600 kb on - strand, within CA264_18565 at 4319.610 kb on + strand, within CA264_18565 at 4319.614 kb on + strand, within CA264_18565 at 4319.614 kb on + strand, within CA264_18565 at 4319.620 kb on + strand, within CA264_18565 at 4319.620 kb on + strand, within CA264_18565 at 4319.634 kb on - strand, within CA264_18565 at 4319.636 kb on + strand, within CA264_18565 at 4319.639 kb on + strand, within CA264_18565 at 4319.639 kb on + strand, within CA264_18565 at 4319.640 kb on - strand, within CA264_18565 at 4319.648 kb on - strand, within CA264_18565 at 4319.650 kb on + strand, within CA264_18565 at 4319.650 kb on + strand, within CA264_18565 at 4319.650 kb on + strand, within CA264_18565 at 4319.651 kb on - strand, within CA264_18565 at 4319.653 kb on + strand, within CA264_18565 at 4319.707 kb on + strand, within CA264_18565 at 4319.746 kb on + strand, within CA264_18565 at 4319.748 kb on + strand, within CA264_18565 at 4319.767 kb on + strand, within CA264_18565 at 4319.781 kb on + strand, within CA264_18565 at 4319.782 kb on - strand, within CA264_18565 at 4319.785 kb on + strand, within CA264_18565 at 4319.785 kb on + strand, within CA264_18565 at 4319.786 kb on - strand, within CA264_18565 at 4319.786 kb on - strand, within CA264_18565 at 4319.786 kb on - strand, within CA264_18565 at 4319.788 kb on + strand, within CA264_18565 at 4319.807 kb on + strand, within CA264_18565 at 4319.860 kb on + strand, within CA264_18565 at 4319.861 kb on - strand, within CA264_18565 at 4319.865 kb on + strand, within CA264_18565 at 4319.865 kb on + strand, within CA264_18565 at 4319.878 kb on + strand, within CA264_18565 at 4319.902 kb on + strand, within CA264_18565 at 4319.906 kb on - strand, within CA264_18565 at 4319.908 kb on + strand, within CA264_18565 at 4319.908 kb on + strand, within CA264_18565 at 4319.908 kb on + strand, within CA264_18565 at 4319.926 kb on - strand, within CA264_18565 at 4319.930 kb on - strand, within CA264_18565 at 4319.938 kb on + strand, within CA264_18565 at 4319.945 kb on + strand, within CA264_18565 at 4319.982 kb on + strand, within CA264_18565 at 4319.983 kb on - strand, within CA264_18565 at 4319.998 kb on - strand, within CA264_18565 at 4320.001 kb on + strand, within CA264_18565 at 4320.016 kb on + strand, within CA264_18565 at 4320.030 kb on + strand, within CA264_18565 at 4320.031 kb on - strand, within CA264_18565 at 4320.131 kb on - strand, within CA264_18565
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM remove 4,317,415 - +0.4 4,317,415 - -0.3 4,317,872 + +0.2 4,317,984 - +0.0 4,318,117 + -1.0 4,318,118 - -0.9 4,318,123 + +0.5 4,318,124 - +0.5 4,318,126 - -0.1 4,318,130 - +0.2 4,318,137 + +1.4 4,318,138 - -0.1 4,318,141 - +0.1 4,318,168 + CA264_18560 0.11 +0.0 4,318,217 + CA264_18560 0.16 +0.3 4,318,217 + CA264_18560 0.16 +0.1 4,318,218 - CA264_18560 0.16 -0.6 4,318,218 - CA264_18560 0.16 -0.1 4,318,318 + CA264_18560 0.25 -0.0 4,318,319 - CA264_18560 0.25 -0.2 4,318,332 + CA264_18560 0.26 +0.1 4,318,332 + CA264_18560 0.26 -0.1 4,318,335 + CA264_18560 0.26 +0.2 4,318,336 - +0.4 4,318,378 + CA264_18560 0.30 +0.4 4,318,379 - CA264_18560 0.30 -0.4 4,318,393 + CA264_18560 0.32 -0.3 4,318,431 - CA264_18560 0.35 -0.9 4,318,457 + CA264_18560 0.37 -0.2 4,318,474 + CA264_18560 0.39 -1.0 4,318,500 - CA264_18560 0.41 +0.3 4,318,500 - CA264_18560 0.41 -1.8 4,318,542 - CA264_18560 0.45 +0.2 4,318,563 - CA264_18560 0.47 -0.3 4,318,576 + CA264_18560 0.48 -0.1 4,318,642 + CA264_18560 0.54 -0.1 4,318,649 - CA264_18560 0.55 +0.5 4,318,748 + CA264_18560 0.64 -0.6 4,318,749 - CA264_18560 0.64 +0.7 4,318,769 + CA264_18560 0.66 -0.5 4,318,769 + CA264_18560 0.66 -0.3 4,318,771 + CA264_18560 0.66 -0.7 4,318,771 + CA264_18560 0.66 +0.0 4,318,827 - CA264_18560 0.71 +0.4 4,318,877 + CA264_18560 0.76 +0.8 4,318,951 + CA264_18560 0.83 +0.0 4,318,961 + CA264_18560 0.83 +0.2 4,318,962 - CA264_18560 0.84 -0.1 4,318,964 + CA264_18560 0.84 +0.1 4,318,965 - CA264_18560 0.84 -1.0 4,318,994 + CA264_18560 0.86 -1.0 4,319,002 + CA264_18560 0.87 +0.1 4,319,003 - CA264_18560 0.87 +0.3 4,319,011 + CA264_18560 0.88 -0.2 4,319,012 - CA264_18560 0.88 -1.2 4,319,016 + CA264_18560 0.88 -0.5 4,319,024 + CA264_18560 0.89 -0.5 4,319,025 - CA264_18560 0.89 +0.7 4,319,076 + +0.2 4,319,076 + +0.1 4,319,077 - +0.3 4,319,080 + +0.4 4,319,080 + -0.3 4,319,081 - +0.3 4,319,081 - -1.0 4,319,081 - +0.1 4,319,150 - +0.1 4,319,161 + -0.1 4,319,161 + +0.5 4,319,226 + -0.5 4,319,227 - -0.8 4,319,256 + +0.5 4,319,273 + CA264_18565 0.11 +0.4 4,319,273 + CA264_18565 0.11 +0.0 4,319,280 + CA264_18565 0.11 -0.9 4,319,281 - CA264_18565 0.11 -0.9 4,319,287 + CA264_18565 0.12 +0.6 4,319,288 - CA264_18565 0.12 +0.2 4,319,297 + CA264_18565 0.13 -0.1 4,319,300 - CA264_18565 0.13 -0.0 4,319,310 + CA264_18565 0.14 +0.0 4,319,310 + CA264_18565 0.14 -1.1 4,319,311 - CA264_18565 0.14 -0.6 4,319,334 + CA264_18565 0.16 +0.6 4,319,335 - CA264_18565 0.16 +0.6 4,319,337 - CA264_18565 0.16 -0.2 4,319,337 - CA264_18565 0.16 -0.7 4,319,352 + CA264_18565 0.17 +1.0 4,319,366 + CA264_18565 0.18 +0.3 4,319,367 - CA264_18565 0.18 -0.3 4,319,367 - CA264_18565 0.18 -1.1 4,319,367 - CA264_18565 0.18 +0.3 4,319,368 + CA264_18565 0.19 -0.2 4,319,368 + CA264_18565 0.19 +0.1 4,319,368 + CA264_18565 0.19 +1.0 4,319,369 - CA264_18565 0.19 -0.2 4,319,371 - CA264_18565 0.19 -0.1 4,319,400 - CA264_18565 0.21 +0.2 4,319,405 - CA264_18565 0.22 -0.4 4,319,424 + CA264_18565 0.23 -0.0 4,319,425 - CA264_18565 0.23 -0.7 4,319,453 - CA264_18565 0.26 +0.0 4,319,550 + CA264_18565 0.34 +0.1 4,319,551 - CA264_18565 0.34 +0.4 4,319,552 + CA264_18565 0.34 +0.5 4,319,553 - CA264_18565 0.34 -0.5 4,319,557 + CA264_18565 0.34 -1.0 4,319,557 + CA264_18565 0.34 -0.0 4,319,575 - CA264_18565 0.36 +0.6 4,319,594 - CA264_18565 0.37 -0.5 4,319,600 - CA264_18565 0.38 -1.3 4,319,610 + CA264_18565 0.39 +1.3 4,319,614 + CA264_18565 0.39 -1.4 4,319,614 + CA264_18565 0.39 -0.3 4,319,620 + CA264_18565 0.39 +0.2 4,319,620 + CA264_18565 0.39 -0.4 4,319,634 - CA264_18565 0.41 +0.6 4,319,636 + CA264_18565 0.41 -0.3 4,319,639 + CA264_18565 0.41 +0.5 4,319,639 + CA264_18565 0.41 -0.1 4,319,640 - CA264_18565 0.41 -0.5 4,319,648 - CA264_18565 0.42 -0.7 4,319,650 + CA264_18565 0.42 +0.6 4,319,650 + CA264_18565 0.42 -0.6 4,319,650 + CA264_18565 0.42 -0.3 4,319,651 - CA264_18565 0.42 +0.1 4,319,653 + CA264_18565 0.42 +0.9 4,319,707 + CA264_18565 0.47 +0.2 4,319,746 + CA264_18565 0.50 -0.5 4,319,748 + CA264_18565 0.50 -0.3 4,319,767 + CA264_18565 0.52 -0.6 4,319,781 + CA264_18565 0.53 -0.4 4,319,782 - CA264_18565 0.53 -0.0 4,319,785 + CA264_18565 0.53 +0.3 4,319,785 + CA264_18565 0.53 +0.6 4,319,786 - CA264_18565 0.53 +0.6 4,319,786 - CA264_18565 0.53 +1.7 4,319,786 - CA264_18565 0.53 -0.6 4,319,788 + CA264_18565 0.53 +0.3 4,319,807 + CA264_18565 0.55 +0.3 4,319,860 + CA264_18565 0.59 +0.4 4,319,861 - CA264_18565 0.59 -0.6 4,319,865 + CA264_18565 0.60 +0.2 4,319,865 + CA264_18565 0.60 +0.5 4,319,878 + CA264_18565 0.61 +0.0 4,319,902 + CA264_18565 0.63 -0.2 4,319,906 - CA264_18565 0.63 -0.1 4,319,908 + CA264_18565 0.63 -0.1 4,319,908 + CA264_18565 0.63 -0.6 4,319,908 + CA264_18565 0.63 +0.8 4,319,926 - CA264_18565 0.65 -0.0 4,319,930 - CA264_18565 0.65 +0.1 4,319,938 + CA264_18565 0.66 +0.6 4,319,945 + CA264_18565 0.66 -0.3 4,319,982 + CA264_18565 0.69 -0.0 4,319,983 - CA264_18565 0.70 -0.0 4,319,998 - CA264_18565 0.71 -0.5 4,320,001 + CA264_18565 0.71 -0.3 4,320,016 + CA264_18565 0.72 +0.1 4,320,030 + CA264_18565 0.73 +2.1 4,320,031 - CA264_18565 0.74 +0.5 4,320,131 - CA264_18565 0.82 +0.2
Or see this region's nucleotide sequence