Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17080

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17070 and CA264_17075 are separated by 119 nucleotidesCA264_17075 and CA264_17080 are separated by 127 nucleotidesCA264_17080 and CA264_17085 are separated by 1 nucleotides CA264_17070: CA264_17070 - NAD(P)-dependent oxidoreductase, at 3,974,951 to 3,975,817 _17070 CA264_17075: CA264_17075 - pterin-4-alpha-carbinolamine dehydratase, at 3,975,937 to 3,976,191 _17075 CA264_17080: CA264_17080 - rRNA (cytidine-2'-O-)-methyltransferase, at 3,976,319 to 3,977,029 _17080 CA264_17085: CA264_17085 - hypothetical protein, at 3,977,031 to 3,978,263 _17085 Position (kb) 3976 3977 3978Strain fitness (log2 ratio) -2 -1 0 1 2at 3975.339 kb on + strand, within CA264_17070at 3975.340 kb on - strand, within CA264_17070at 3975.364 kb on + strand, within CA264_17070at 3975.364 kb on + strand, within CA264_17070at 3975.392 kb on + strand, within CA264_17070at 3975.467 kb on + strand, within CA264_17070at 3975.479 kb on + strand, within CA264_17070at 3975.685 kb on + strand, within CA264_17070at 3975.686 kb on - strand, within CA264_17070at 3975.711 kb on + strand, within CA264_17070at 3975.712 kb on - strand, within CA264_17070at 3975.712 kb on - strand, within CA264_17070at 3975.748 kb on + strandat 3975.748 kb on + strandat 3975.751 kb on - strandat 3975.831 kb on + strandat 3975.852 kb on + strandat 3975.852 kb on + strandat 3975.852 kb on + strandat 3975.853 kb on - strandat 3975.856 kb on + strandat 3975.856 kb on + strandat 3975.856 kb on + strandat 3975.856 kb on + strandat 3975.856 kb on + strandat 3975.857 kb on - strandat 3975.857 kb on - strandat 3975.857 kb on - strandat 3975.858 kb on + strandat 3975.918 kb on + strandat 3975.957 kb on + strandat 3975.958 kb on - strandat 3975.976 kb on - strand, within CA264_17075at 3975.976 kb on - strand, within CA264_17075at 3975.990 kb on + strand, within CA264_17075at 3975.991 kb on - strand, within CA264_17075at 3976.028 kb on + strand, within CA264_17075at 3976.029 kb on - strand, within CA264_17075at 3976.029 kb on - strand, within CA264_17075at 3976.069 kb on + strand, within CA264_17075at 3976.085 kb on + strand, within CA264_17075at 3976.206 kb on + strandat 3976.235 kb on + strandat 3976.236 kb on - strandat 3976.314 kb on - strandat 3976.347 kb on - strandat 3976.390 kb on - strand, within CA264_17080at 3976.409 kb on - strand, within CA264_17080at 3976.423 kb on + strand, within CA264_17080at 3976.424 kb on - strand, within CA264_17080at 3976.425 kb on + strand, within CA264_17080at 3976.980 kb on + strandat 3976.980 kb on + strandat 3977.040 kb on + strandat 3977.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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3,975,339 + CA264_17070 0.45 +0.1
3,975,340 - CA264_17070 0.45 -0.1
3,975,364 + CA264_17070 0.48 -0.1
3,975,364 + CA264_17070 0.48 +0.5
3,975,392 + CA264_17070 0.51 -0.0
3,975,467 + CA264_17070 0.60 -0.6
3,975,479 + CA264_17070 0.61 -0.1
3,975,685 + CA264_17070 0.85 -0.3
3,975,686 - CA264_17070 0.85 -0.5
3,975,711 + CA264_17070 0.88 -0.3
3,975,712 - CA264_17070 0.88 -0.5
3,975,712 - CA264_17070 0.88 +0.3
3,975,748 + +2.4
3,975,748 + +1.1
3,975,751 - +0.0
3,975,831 + -1.0
3,975,852 + -0.8
3,975,852 + -1.2
3,975,852 + +0.6
3,975,853 - -0.3
3,975,856 + +1.2
3,975,856 + +1.2
3,975,856 + -2.4
3,975,856 + +0.1
3,975,856 + +0.2
3,975,857 - -0.9
3,975,857 - -1.1
3,975,857 - -0.6
3,975,858 + -0.2
3,975,918 + -0.5
3,975,957 + -0.4
3,975,958 - -0.9
3,975,976 - CA264_17075 0.15 -0.3
3,975,976 - CA264_17075 0.15 -1.0
3,975,990 + CA264_17075 0.21 -0.7
3,975,991 - CA264_17075 0.21 -0.8
3,976,028 + CA264_17075 0.36 +0.9
3,976,029 - CA264_17075 0.36 -0.5
3,976,029 - CA264_17075 0.36 -1.1
3,976,069 + CA264_17075 0.52 -1.9
3,976,085 + CA264_17075 0.58 -0.2
3,976,206 + +2.0
3,976,235 + -0.0
3,976,236 - -0.1
3,976,314 - -0.9
3,976,347 - -0.5
3,976,390 - CA264_17080 0.10 -0.3
3,976,409 - CA264_17080 0.13 -0.2
3,976,423 + CA264_17080 0.15 -0.5
3,976,424 - CA264_17080 0.15 +2.2
3,976,425 + CA264_17080 0.15 -0.5
3,976,980 + -0.2
3,976,980 + -0.4
3,977,040 + -0.9
3,977,054 - -0.0

Or see this region's nucleotide sequence