Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16375

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16370 and CA264_16375 are separated by 230 nucleotidesCA264_16375 and CA264_16380 are separated by 164 nucleotides CA264_16370: CA264_16370 - gliding motility lipoprotein GldK, at 3,809,911 to 3,810,927 _16370 CA264_16375: CA264_16375 - hypothetical protein, at 3,811,158 to 3,812,120 _16375 CA264_16380: CA264_16380 - uroporphyrinogen-III synthase, at 3,812,285 to 3,813,088 _16380 Position (kb) 3811 3812 3813Strain fitness (log2 ratio) -2 -1 0 1 2at 3810.195 kb on - strand, within CA264_16370at 3810.213 kb on + strand, within CA264_16370at 3810.215 kb on + strand, within CA264_16370at 3810.236 kb on + strand, within CA264_16370at 3810.322 kb on - strand, within CA264_16370at 3810.344 kb on + strand, within CA264_16370at 3810.345 kb on - strand, within CA264_16370at 3810.510 kb on - strand, within CA264_16370at 3810.512 kb on + strand, within CA264_16370at 3810.513 kb on - strand, within CA264_16370at 3810.540 kb on - strand, within CA264_16370at 3810.545 kb on + strand, within CA264_16370at 3810.567 kb on + strand, within CA264_16370at 3810.697 kb on - strand, within CA264_16370at 3810.708 kb on + strand, within CA264_16370at 3810.913 kb on - strandat 3810.917 kb on - strandat 3810.937 kb on + strandat 3810.995 kb on - strandat 3811.059 kb on + strandat 3811.071 kb on + strandat 3811.105 kb on + strandat 3811.147 kb on + strandat 3811.229 kb on - strandat 3811.240 kb on - strandat 3811.369 kb on + strand, within CA264_16375at 3811.370 kb on - strand, within CA264_16375at 3811.573 kb on + strand, within CA264_16375at 3811.631 kb on - strand, within CA264_16375at 3811.673 kb on + strand, within CA264_16375at 3811.674 kb on - strand, within CA264_16375at 3811.675 kb on + strand, within CA264_16375at 3811.676 kb on - strand, within CA264_16375at 3811.795 kb on + strand, within CA264_16375at 3811.796 kb on - strand, within CA264_16375at 3811.836 kb on - strand, within CA264_16375at 3811.963 kb on + strand, within CA264_16375at 3811.965 kb on + strand, within CA264_16375at 3811.965 kb on + strand, within CA264_16375at 3811.965 kb on + strand, within CA264_16375at 3811.966 kb on - strand, within CA264_16375at 3811.966 kb on - strand, within CA264_16375at 3811.966 kb on - strand, within CA264_16375at 3812.100 kb on + strandat 3812.101 kb on - strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.166 kb on + strandat 3812.167 kb on - strandat 3812.180 kb on - strandat 3812.180 kb on - strandat 3812.181 kb on + strandat 3812.181 kb on + strandat 3812.185 kb on + strandat 3812.185 kb on + strandat 3812.186 kb on - strandat 3812.244 kb on + strandat 3812.245 kb on - strandat 3812.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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3,810,195 - CA264_16370 0.28 -0.9
3,810,213 + CA264_16370 0.30 -1.4
3,810,215 + CA264_16370 0.30 -0.5
3,810,236 + CA264_16370 0.32 -0.8
3,810,322 - CA264_16370 0.40 +0.3
3,810,344 + CA264_16370 0.43 +0.4
3,810,345 - CA264_16370 0.43 -0.5
3,810,510 - CA264_16370 0.59 +0.4
3,810,512 + CA264_16370 0.59 +0.6
3,810,513 - CA264_16370 0.59 +1.2
3,810,540 - CA264_16370 0.62 -1.4
3,810,545 + CA264_16370 0.62 +1.1
3,810,567 + CA264_16370 0.65 -0.1
3,810,697 - CA264_16370 0.77 +0.9
3,810,708 + CA264_16370 0.78 -1.5
3,810,913 - -0.3
3,810,917 - +0.6
3,810,937 + -0.1
3,810,995 - +0.6
3,811,059 + +0.4
3,811,071 + -0.4
3,811,105 + -1.1
3,811,147 + -0.2
3,811,229 - -0.6
3,811,240 - +0.9
3,811,369 + CA264_16375 0.22 -0.1
3,811,370 - CA264_16375 0.22 +0.1
3,811,573 + CA264_16375 0.43 +1.5
3,811,631 - CA264_16375 0.49 +1.2
3,811,673 + CA264_16375 0.53 -1.2
3,811,674 - CA264_16375 0.54 +0.1
3,811,675 + CA264_16375 0.54 +0.5
3,811,676 - CA264_16375 0.54 -1.4
3,811,795 + CA264_16375 0.66 -0.1
3,811,796 - CA264_16375 0.66 -0.9
3,811,836 - CA264_16375 0.70 -1.3
3,811,963 + CA264_16375 0.84 +0.2
3,811,965 + CA264_16375 0.84 -0.9
3,811,965 + CA264_16375 0.84 -0.7
3,811,965 + CA264_16375 0.84 +0.6
3,811,966 - CA264_16375 0.84 -0.2
3,811,966 - CA264_16375 0.84 -1.5
3,811,966 - CA264_16375 0.84 +0.0
3,812,100 + +0.9
3,812,101 - +0.2
3,812,166 + +2.1
3,812,166 + +0.2
3,812,166 + +0.4
3,812,166 + -2.0
3,812,166 + +0.3
3,812,167 - -0.5
3,812,180 - -0.6
3,812,180 - +0.3
3,812,181 + -1.0
3,812,181 + -0.5
3,812,185 + +1.1
3,812,185 + -0.1
3,812,186 - -1.3
3,812,244 + +0.1
3,812,245 - +0.3
3,812,248 - +0.4

Or see this region's nucleotide sequence