Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15455

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15450 and CA264_15455 are separated by 278 nucleotidesCA264_15455 and CA264_15460 are separated by 233 nucleotidesCA264_15460 and CA264_15465 are separated by 294 nucleotides CA264_15450: CA264_15450 - hypothetical protein, at 3,621,648 to 3,622,490 _15450 CA264_15455: CA264_15455 - hypothetical protein, at 3,622,769 to 3,622,987 _15455 CA264_15460: CA264_15460 - hypothetical protein, at 3,623,221 to 3,623,625 _15460 CA264_15465: CA264_15465 - glycerol acyltransferase, at 3,623,920 to 3,625,275 _15465 Position (kb) 3622 3623Strain fitness (log2 ratio) -2 -1 0 1 2at 3621.787 kb on + strand, within CA264_15450at 3621.788 kb on - strand, within CA264_15450at 3621.788 kb on - strand, within CA264_15450at 3621.788 kb on - strand, within CA264_15450at 3622.061 kb on + strand, within CA264_15450at 3622.071 kb on - strand, within CA264_15450at 3622.178 kb on + strand, within CA264_15450at 3622.178 kb on + strand, within CA264_15450at 3622.194 kb on + strand, within CA264_15450at 3622.235 kb on + strand, within CA264_15450at 3622.395 kb on + strand, within CA264_15450at 3622.395 kb on + strand, within CA264_15450at 3622.395 kb on + strand, within CA264_15450at 3622.395 kb on + strand, within CA264_15450at 3622.396 kb on - strand, within CA264_15450at 3622.396 kb on - strand, within CA264_15450at 3622.396 kb on - strand, within CA264_15450at 3622.425 kb on + strandat 3622.425 kb on + strandat 3622.427 kb on + strandat 3622.427 kb on + strandat 3622.427 kb on + strandat 3622.428 kb on - strandat 3622.428 kb on - strandat 3622.432 kb on + strandat 3622.432 kb on + strandat 3622.433 kb on - strandat 3622.435 kb on + strandat 3622.444 kb on + strandat 3622.444 kb on + strandat 3622.445 kb on - strandat 3622.507 kb on + strandat 3622.507 kb on + strandat 3622.508 kb on - strandat 3622.519 kb on - strandat 3622.568 kb on - strandat 3622.590 kb on + strandat 3622.590 kb on + strandat 3622.590 kb on + strandat 3622.592 kb on + strandat 3622.596 kb on + strandat 3622.597 kb on - strandat 3622.597 kb on - strandat 3622.640 kb on - strandat 3622.668 kb on + strandat 3622.668 kb on + strandat 3622.669 kb on - strandat 3622.669 kb on - strandat 3622.669 kb on - strandat 3622.669 kb on - strandat 3622.736 kb on + strandat 3622.749 kb on - strandat 3622.756 kb on - strandat 3622.869 kb on + strand, within CA264_15455at 3622.869 kb on + strand, within CA264_15455at 3622.869 kb on + strand, within CA264_15455at 3622.870 kb on - strand, within CA264_15455at 3622.870 kb on - strand, within CA264_15455at 3622.870 kb on - strand, within CA264_15455at 3622.889 kb on + strand, within CA264_15455at 3622.890 kb on - strand, within CA264_15455at 3622.906 kb on - strand, within CA264_15455at 3623.014 kb on + strandat 3623.015 kb on - strandat 3623.065 kb on + strandat 3623.066 kb on - strandat 3623.066 kb on - strandat 3623.066 kb on - strandat 3623.173 kb on + strandat 3623.173 kb on + strandat 3623.181 kb on + strandat 3623.184 kb on + strandat 3623.187 kb on + strandat 3623.242 kb on + strandat 3623.243 kb on - strandat 3623.257 kb on + strandat 3623.257 kb on + strandat 3623.260 kb on + strandat 3623.282 kb on + strand, within CA264_15460at 3623.283 kb on - strand, within CA264_15460at 3623.351 kb on + strand, within CA264_15460at 3623.366 kb on + strand, within CA264_15460at 3623.520 kb on - strand, within CA264_15460at 3623.593 kb on + strandat 3623.612 kb on + strandat 3623.613 kb on - strandat 3623.623 kb on + strandat 3623.641 kb on - strandat 3623.769 kb on - strandat 3623.773 kb on - strandat 3623.822 kb on - strandat 3623.822 kb on - strandat 3623.920 kb on - strandat 3623.926 kb on + strandat 3623.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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3,621,787 + CA264_15450 0.16 +0.5
3,621,788 - CA264_15450 0.17 +0.9
3,621,788 - CA264_15450 0.17 -0.1
3,621,788 - CA264_15450 0.17 -1.0
3,622,061 + CA264_15450 0.49 +0.2
3,622,071 - CA264_15450 0.50 -0.3
3,622,178 + CA264_15450 0.63 +2.3
3,622,178 + CA264_15450 0.63 +0.4
3,622,194 + CA264_15450 0.65 -0.3
3,622,235 + CA264_15450 0.70 +0.1
3,622,395 + CA264_15450 0.89 -0.1
3,622,395 + CA264_15450 0.89 -0.1
3,622,395 + CA264_15450 0.89 -0.1
3,622,395 + CA264_15450 0.89 -0.3
3,622,396 - CA264_15450 0.89 -0.1
3,622,396 - CA264_15450 0.89 -0.9
3,622,396 - CA264_15450 0.89 +0.9
3,622,425 + +0.9
3,622,425 + +0.9
3,622,427 + -0.9
3,622,427 + +0.3
3,622,427 + -0.3
3,622,428 - -0.4
3,622,428 - -0.3
3,622,432 + -0.4
3,622,432 + -0.1
3,622,433 - -0.2
3,622,435 + +0.9
3,622,444 + +0.4
3,622,444 + +0.0
3,622,445 - -0.4
3,622,507 + -0.4
3,622,507 + +0.7
3,622,508 - +0.3
3,622,519 - -0.6
3,622,568 - -1.1
3,622,590 + -2.0
3,622,590 + -0.1
3,622,590 + -0.1
3,622,592 + +0.8
3,622,596 + +0.5
3,622,597 - -0.4
3,622,597 - -0.1
3,622,640 - -1.2
3,622,668 + +1.7
3,622,668 + -1.1
3,622,669 - -0.1
3,622,669 - -0.9
3,622,669 - -1.4
3,622,669 - -0.1
3,622,736 + +1.8
3,622,749 - -0.1
3,622,756 - -0.4
3,622,869 + CA264_15455 0.46 +0.1
3,622,869 + CA264_15455 0.46 +0.5
3,622,869 + CA264_15455 0.46 -0.5
3,622,870 - CA264_15455 0.46 +1.0
3,622,870 - CA264_15455 0.46 -0.1
3,622,870 - CA264_15455 0.46 -0.1
3,622,889 + CA264_15455 0.55 +0.0
3,622,890 - CA264_15455 0.55 +0.0
3,622,906 - CA264_15455 0.63 +0.5
3,623,014 + +0.5
3,623,015 - -1.0
3,623,065 + +0.9
3,623,066 - -0.2
3,623,066 - +0.8
3,623,066 - -0.6
3,623,173 + +0.2
3,623,173 + +0.5
3,623,181 + +0.2
3,623,184 + +1.7
3,623,187 + +1.0
3,623,242 + -0.3
3,623,243 - -0.2
3,623,257 + -0.1
3,623,257 + +0.6
3,623,260 + -1.2
3,623,282 + CA264_15460 0.15 -0.4
3,623,283 - CA264_15460 0.15 -0.6
3,623,351 + CA264_15460 0.32 +0.9
3,623,366 + CA264_15460 0.36 -0.1
3,623,520 - CA264_15460 0.74 -0.4
3,623,593 + -0.7
3,623,612 + -0.1
3,623,613 - -1.0
3,623,623 + -0.3
3,623,641 - -0.4
3,623,769 - +0.1
3,623,773 - -0.3
3,623,822 - +1.1
3,623,822 - +0.7
3,623,920 - -0.1
3,623,926 + +0.3
3,623,934 - -0.4

Or see this region's nucleotide sequence