Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13315

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13310 and CA264_13315 are separated by 74 nucleotidesCA264_13315 and CA264_13320 are separated by 117 nucleotides CA264_13310: CA264_13310 - glycosyl hydrolase, at 3,103,822 to 3,106,722 _13310 CA264_13315: CA264_13315 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 3,106,797 to 3,107,933 _13315 CA264_13320: CA264_13320 - 3-phosphoglycerate dehydrogenase, at 3,108,051 to 3,109,943 _13320 Position (kb) 3106 3107 3108Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3105.804 kb on + strand, within CA264_13310at 3105.804 kb on + strand, within CA264_13310at 3105.944 kb on - strand, within CA264_13310at 3105.967 kb on + strand, within CA264_13310at 3105.967 kb on + strand, within CA264_13310at 3105.983 kb on + strand, within CA264_13310at 3105.994 kb on + strand, within CA264_13310at 3106.082 kb on - strand, within CA264_13310at 3106.082 kb on - strand, within CA264_13310at 3106.106 kb on - strand, within CA264_13310at 3106.174 kb on + strand, within CA264_13310at 3106.174 kb on + strand, within CA264_13310at 3106.204 kb on + strand, within CA264_13310at 3106.204 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.262 kb on - strand, within CA264_13310at 3106.262 kb on - strand, within CA264_13310at 3106.402 kb on + strand, within CA264_13310at 3106.402 kb on + strand, within CA264_13310at 3106.417 kb on + strand, within CA264_13310at 3106.462 kb on - strandat 3106.584 kb on - strandat 3106.659 kb on - strandat 3106.659 kb on - strandat 3106.664 kb on - strandat 3106.682 kb on + strandat 3106.683 kb on - strandat 3106.683 kb on - strandat 3106.697 kb on - strandat 3106.699 kb on - strandat 3106.734 kb on + strandat 3106.734 kb on + strandat 3106.735 kb on - strandat 3106.740 kb on - strandat 3106.809 kb on - strandat 3106.846 kb on + strandat 3106.858 kb on + strandat 3106.858 kb on + strandat 3106.859 kb on - strandat 3106.859 kb on - strandat 3106.859 kb on - strandat 3106.887 kb on - strandat 3106.899 kb on - strandat 3106.905 kb on + strandat 3106.905 kb on + strandat 3106.960 kb on + strand, within CA264_13315at 3106.962 kb on + strand, within CA264_13315at 3106.963 kb on - strand, within CA264_13315at 3106.963 kb on - strand, within CA264_13315at 3106.965 kb on - strand, within CA264_13315at 3106.965 kb on - strand, within CA264_13315at 3106.965 kb on - strand, within CA264_13315at 3107.056 kb on + strand, within CA264_13315at 3107.057 kb on - strand, within CA264_13315at 3107.113 kb on + strand, within CA264_13315at 3107.114 kb on - strand, within CA264_13315at 3107.211 kb on - strand, within CA264_13315at 3107.275 kb on - strand, within CA264_13315at 3107.275 kb on - strand, within CA264_13315at 3107.275 kb on - strand, within CA264_13315at 3107.280 kb on + strand, within CA264_13315at 3107.281 kb on - strand, within CA264_13315at 3107.321 kb on + strand, within CA264_13315at 3107.425 kb on + strand, within CA264_13315at 3107.425 kb on + strand, within CA264_13315at 3107.425 kb on + strand, within CA264_13315at 3107.607 kb on - strand, within CA264_13315at 3107.793 kb on + strand, within CA264_13315at 3107.825 kb on + strandat 3107.872 kb on + strandat 3107.873 kb on - strandat 3107.950 kb on - strandat 3107.959 kb on + strandat 3108.007 kb on + strandat 3108.019 kb on + strandat 3108.020 kb on - strandat 3108.020 kb on - strandat 3108.041 kb on - strandat 3108.041 kb on - strandat 3108.043 kb on - strandat 3108.066 kb on + strandat 3108.071 kb on + strandat 3108.071 kb on + strandat 3108.072 kb on - strandat 3108.095 kb on + strandat 3108.345 kb on + strand, within CA264_13320at 3108.411 kb on + strand, within CA264_13320at 3108.412 kb on - strand, within CA264_13320at 3108.419 kb on - strand, within CA264_13320at 3108.558 kb on + strand, within CA264_13320at 3108.558 kb on + strand, within CA264_13320at 3108.559 kb on - strand, within CA264_13320at 3108.592 kb on + strand, within CA264_13320at 3108.881 kb on - strand, within CA264_13320at 3108.881 kb on - strand, within CA264_13320at 3108.907 kb on + strand, within CA264_13320

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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3,105,804 + CA264_13310 0.68 -0.8
3,105,804 + CA264_13310 0.68 +0.3
3,105,944 - CA264_13310 0.73 +0.4
3,105,967 + CA264_13310 0.74 -0.5
3,105,967 + CA264_13310 0.74 -0.3
3,105,983 + CA264_13310 0.74 -0.6
3,105,994 + CA264_13310 0.75 +0.2
3,106,082 - CA264_13310 0.78 +1.6
3,106,082 - CA264_13310 0.78 +0.8
3,106,106 - CA264_13310 0.79 -0.2
3,106,174 + CA264_13310 0.81 +0.2
3,106,174 + CA264_13310 0.81 +0.2
3,106,204 + CA264_13310 0.82 -0.4
3,106,204 + CA264_13310 0.82 +0.3
3,106,261 + CA264_13310 0.84 -0.1
3,106,261 + CA264_13310 0.84 +0.4
3,106,261 + CA264_13310 0.84 +1.0
3,106,261 + CA264_13310 0.84 +0.0
3,106,262 - CA264_13310 0.84 +0.1
3,106,262 - CA264_13310 0.84 +0.6
3,106,402 + CA264_13310 0.89 +0.5
3,106,402 + CA264_13310 0.89 +0.3
3,106,417 + CA264_13310 0.89 +0.5
3,106,462 - +0.4
3,106,584 - -0.1
3,106,659 - -0.2
3,106,659 - +0.7
3,106,664 - -1.2
3,106,682 + -0.0
3,106,683 - +0.4
3,106,683 - -0.4
3,106,697 - +0.2
3,106,699 - -1.0
3,106,734 + +0.3
3,106,734 + +0.3
3,106,735 - -1.7
3,106,740 - +0.8
3,106,809 - -2.7
3,106,846 + -1.9
3,106,858 + -2.3
3,106,858 + -2.9
3,106,859 - -3.4
3,106,859 - -3.6
3,106,859 - -2.3
3,106,887 - -2.8
3,106,899 - -2.2
3,106,905 + -3.9
3,106,905 + -2.6
3,106,960 + CA264_13315 0.14 -1.0
3,106,962 + CA264_13315 0.15 -2.4
3,106,963 - CA264_13315 0.15 -1.8
3,106,963 - CA264_13315 0.15 -1.6
3,106,965 - CA264_13315 0.15 -1.6
3,106,965 - CA264_13315 0.15 -2.8
3,106,965 - CA264_13315 0.15 -0.9
3,107,056 + CA264_13315 0.23 +0.7
3,107,057 - CA264_13315 0.23 -2.4
3,107,113 + CA264_13315 0.28 -3.2
3,107,114 - CA264_13315 0.28 -0.8
3,107,211 - CA264_13315 0.36 -2.0
3,107,275 - CA264_13315 0.42 -2.2
3,107,275 - CA264_13315 0.42 -2.4
3,107,275 - CA264_13315 0.42 -1.9
3,107,280 + CA264_13315 0.42 -2.2
3,107,281 - CA264_13315 0.43 -3.6
3,107,321 + CA264_13315 0.46 -2.0
3,107,425 + CA264_13315 0.55 -3.0
3,107,425 + CA264_13315 0.55 -2.2
3,107,425 + CA264_13315 0.55 -1.7
3,107,607 - CA264_13315 0.71 -2.2
3,107,793 + CA264_13315 0.88 -1.6
3,107,825 + -2.6
3,107,872 + -2.8
3,107,873 - -3.1
3,107,950 - -2.3
3,107,959 + -1.1
3,108,007 + +0.6
3,108,019 + -0.3
3,108,020 - -1.4
3,108,020 - -0.8
3,108,041 - -2.8
3,108,041 - -1.1
3,108,043 - -0.8
3,108,066 + -0.0
3,108,071 + -0.5
3,108,071 + -0.3
3,108,072 - -1.5
3,108,095 + -0.2
3,108,345 + CA264_13320 0.16 -1.2
3,108,411 + CA264_13320 0.19 +0.0
3,108,412 - CA264_13320 0.19 -1.2
3,108,419 - CA264_13320 0.19 -0.4
3,108,558 + CA264_13320 0.27 -0.0
3,108,558 + CA264_13320 0.27 -0.3
3,108,559 - CA264_13320 0.27 -0.4
3,108,592 + CA264_13320 0.29 -0.2
3,108,881 - CA264_13320 0.44 -0.1
3,108,881 - CA264_13320 0.44 -0.4
3,108,907 + CA264_13320 0.45 +0.3

Or see this region's nucleotide sequence