Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12250

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12240 and CA264_12245 overlap by 1 nucleotidesCA264_12245 and CA264_12250 overlap by 48 nucleotidesCA264_12250 and CA264_12255 are separated by 214 nucleotides CA264_12240: CA264_12240 - ABC transporter ATP-binding protein, at 2,851,138 to 2,852,097 _12240 CA264_12245: CA264_12245 - ABC transporter permease, at 2,852,097 to 2,852,867 _12245 CA264_12250: CA264_12250 - hypothetical protein, at 2,852,820 to 2,853,548 _12250 CA264_12255: CA264_12255 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 2,853,763 to 2,855,010 _12255 Position (kb) 2852 2853 2854Strain fitness (log2 ratio) -1 0 1at 2851.833 kb on - strand, within CA264_12240at 2852.124 kb on - strandat 2852.155 kb on + strandat 2852.155 kb on + strandat 2852.244 kb on + strand, within CA264_12245at 2852.245 kb on - strand, within CA264_12245at 2852.340 kb on + strand, within CA264_12245at 2852.341 kb on - strand, within CA264_12245at 2852.372 kb on - strand, within CA264_12245at 2852.469 kb on + strand, within CA264_12245at 2852.539 kb on - strand, within CA264_12245at 2852.634 kb on + strand, within CA264_12245at 2852.691 kb on + strand, within CA264_12245at 2852.801 kb on - strandat 2852.838 kb on + strandat 2853.033 kb on + strand, within CA264_12250at 2853.033 kb on + strand, within CA264_12250at 2853.034 kb on - strand, within CA264_12250at 2853.042 kb on + strand, within CA264_12250at 2853.043 kb on - strand, within CA264_12250at 2853.083 kb on - strand, within CA264_12250at 2853.144 kb on - strand, within CA264_12250at 2853.144 kb on - strand, within CA264_12250at 2853.151 kb on + strand, within CA264_12250at 2853.152 kb on - strand, within CA264_12250at 2853.152 kb on - strand, within CA264_12250at 2853.263 kb on + strand, within CA264_12250at 2853.265 kb on + strand, within CA264_12250at 2853.278 kb on + strand, within CA264_12250at 2853.301 kb on + strand, within CA264_12250at 2853.417 kb on + strand, within CA264_12250at 2853.530 kb on + strandat 2853.565 kb on + strandat 2853.566 kb on - strandat 2853.569 kb on + strandat 2853.570 kb on - strandat 2853.624 kb on - strandat 2853.624 kb on - strandat 2853.633 kb on + strandat 2853.634 kb on - strandat 2853.635 kb on + strandat 2853.635 kb on + strandat 2853.642 kb on + strandat 2853.658 kb on - strandat 2853.697 kb on + strandat 2853.730 kb on + strandat 2853.730 kb on + strandat 2853.764 kb on + strandat 2853.764 kb on + strandat 2853.765 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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2,851,833 - CA264_12240 0.72 -0.7
2,852,124 - -1.0
2,852,155 + -1.2
2,852,155 + +0.3
2,852,244 + CA264_12245 0.19 -0.0
2,852,245 - CA264_12245 0.19 +0.2
2,852,340 + CA264_12245 0.32 -0.1
2,852,341 - CA264_12245 0.32 -0.3
2,852,372 - CA264_12245 0.36 -0.2
2,852,469 + CA264_12245 0.48 +0.6
2,852,539 - CA264_12245 0.57 +0.1
2,852,634 + CA264_12245 0.70 +0.2
2,852,691 + CA264_12245 0.77 -0.7
2,852,801 - +0.1
2,852,838 + +0.3
2,853,033 + CA264_12250 0.29 -0.1
2,853,033 + CA264_12250 0.29 +0.4
2,853,034 - CA264_12250 0.29 +0.7
2,853,042 + CA264_12250 0.30 -0.3
2,853,043 - CA264_12250 0.31 +0.3
2,853,083 - CA264_12250 0.36 +0.7
2,853,144 - CA264_12250 0.44 -0.6
2,853,144 - CA264_12250 0.44 +0.3
2,853,151 + CA264_12250 0.45 +0.4
2,853,152 - CA264_12250 0.46 +0.7
2,853,152 - CA264_12250 0.46 -0.2
2,853,263 + CA264_12250 0.61 -0.3
2,853,265 + CA264_12250 0.61 +0.0
2,853,278 + CA264_12250 0.63 +0.6
2,853,301 + CA264_12250 0.66 +0.5
2,853,417 + CA264_12250 0.82 -0.2
2,853,530 + -0.1
2,853,565 + -0.5
2,853,566 - -0.8
2,853,569 + +0.5
2,853,570 - -0.1
2,853,624 - -0.7
2,853,624 - +0.1
2,853,633 + -0.0
2,853,634 - -0.6
2,853,635 + +0.3
2,853,635 + +1.0
2,853,642 + -0.1
2,853,658 - +0.5
2,853,697 + +0.3
2,853,730 + +1.6
2,853,730 + +1.1
2,853,764 + +0.4
2,853,764 + +0.6
2,853,765 - +0.3

Or see this region's nucleotide sequence