Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05855

Experiment: m.b. Cobalt chloride 0.15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05845 and CA264_05850 overlap by 59 nucleotidesCA264_05850 and CA264_05855 are separated by 135 nucleotidesCA264_05855 and CA264_05860 are separated by 219 nucleotides CA264_05845: CA264_05845 - ribonuclease, at 1,360,539 to 1,361,984 _05845 CA264_05850: CA264_05850 - hypothetical protein, at 1,361,926 to 1,362,693 _05850 CA264_05855: CA264_05855 - hypothetical protein, at 1,362,829 to 1,363,275 _05855 CA264_05860: CA264_05860 - serine protease, at 1,363,495 to 1,365,771 _05860 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -2 -1 0 1at 1361.835 kb on + strand, within CA264_05845at 1361.836 kb on - strand, within CA264_05845at 1361.836 kb on - strand, within CA264_05845at 1361.883 kb on + strandat 1361.928 kb on - strandat 1361.982 kb on + strandat 1362.155 kb on + strand, within CA264_05850at 1362.343 kb on - strand, within CA264_05850at 1362.421 kb on - strand, within CA264_05850at 1362.421 kb on - strand, within CA264_05850at 1362.486 kb on - strand, within CA264_05850at 1362.491 kb on + strand, within CA264_05850at 1362.492 kb on - strand, within CA264_05850at 1362.558 kb on - strand, within CA264_05850at 1362.608 kb on - strand, within CA264_05850at 1362.655 kb on - strandat 1362.704 kb on - strandat 1362.726 kb on - strandat 1362.726 kb on - strandat 1362.734 kb on + strandat 1362.734 kb on + strandat 1362.734 kb on + strandat 1362.734 kb on + strandat 1362.763 kb on + strandat 1362.803 kb on + strandat 1362.803 kb on + strandat 1362.803 kb on + strandat 1362.807 kb on + strandat 1362.813 kb on + strandat 1362.819 kb on + strandat 1362.820 kb on - strandat 1362.826 kb on + strandat 1362.827 kb on - strandat 1362.827 kb on - strandat 1362.827 kb on - strandat 1362.827 kb on - strandat 1362.828 kb on + strandat 1362.829 kb on - strandat 1362.918 kb on + strand, within CA264_05855at 1362.974 kb on + strand, within CA264_05855at 1362.974 kb on + strand, within CA264_05855at 1362.975 kb on - strand, within CA264_05855at 1363.061 kb on - strand, within CA264_05855at 1363.061 kb on - strand, within CA264_05855at 1363.106 kb on + strand, within CA264_05855at 1363.107 kb on - strand, within CA264_05855at 1363.112 kb on - strand, within CA264_05855at 1363.112 kb on - strand, within CA264_05855at 1363.147 kb on - strand, within CA264_05855at 1363.147 kb on - strand, within CA264_05855at 1363.245 kb on + strandat 1363.246 kb on - strandat 1363.246 kb on - strandat 1363.274 kb on - strandat 1363.283 kb on + strandat 1363.283 kb on + strandat 1363.283 kb on + strandat 1363.284 kb on - strandat 1363.284 kb on - strandat 1363.284 kb on - strandat 1363.285 kb on + strandat 1363.301 kb on - strandat 1363.306 kb on - strandat 1363.311 kb on + strandat 1363.359 kb on - strandat 1363.359 kb on - strandat 1363.428 kb on + strandat 1363.429 kb on - strandat 1363.450 kb on + strandat 1363.455 kb on - strandat 1363.480 kb on + strandat 1363.481 kb on - strandat 1363.511 kb on + strandat 1363.512 kb on - strandat 1363.512 kb on - strandat 1363.657 kb on + strandat 1363.657 kb on + strandat 1363.658 kb on - strandat 1363.658 kb on - strandat 1363.658 kb on - strandat 1363.768 kb on + strand, within CA264_05860at 1363.807 kb on + strand, within CA264_05860at 1363.867 kb on - strand, within CA264_05860at 1363.933 kb on - strand, within CA264_05860at 1363.969 kb on - strand, within CA264_05860at 1363.969 kb on - strand, within CA264_05860at 1364.011 kb on + strand, within CA264_05860at 1364.012 kb on - strand, within CA264_05860at 1364.032 kb on + strand, within CA264_05860at 1364.032 kb on + strand, within CA264_05860at 1364.033 kb on - strand, within CA264_05860at 1364.033 kb on - strand, within CA264_05860at 1364.033 kb on - strand, within CA264_05860at 1364.038 kb on + strand, within CA264_05860at 1364.050 kb on + strand, within CA264_05860at 1364.050 kb on + strand, within CA264_05860at 1364.051 kb on - strand, within CA264_05860at 1364.053 kb on + strand, within CA264_05860at 1364.054 kb on - strand, within CA264_05860at 1364.054 kb on - strand, within CA264_05860at 1364.059 kb on + strand, within CA264_05860at 1364.059 kb on + strand, within CA264_05860at 1364.059 kb on + strand, within CA264_05860at 1364.059 kb on + strand, within CA264_05860at 1364.059 kb on + strand, within CA264_05860at 1364.059 kb on + strand, within CA264_05860at 1364.060 kb on - strand, within CA264_05860at 1364.093 kb on + strand, within CA264_05860at 1364.093 kb on + strand, within CA264_05860at 1364.118 kb on + strand, within CA264_05860at 1364.118 kb on + strand, within CA264_05860at 1364.119 kb on - strand, within CA264_05860at 1364.218 kb on + strand, within CA264_05860at 1364.239 kb on + strand, within CA264_05860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.15 mM
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1,361,835 + CA264_05845 0.90 -1.4
1,361,836 - CA264_05845 0.90 +0.2
1,361,836 - CA264_05845 0.90 -0.2
1,361,883 + -0.4
1,361,928 - -0.2
1,361,982 + -0.5
1,362,155 + CA264_05850 0.30 -0.1
1,362,343 - CA264_05850 0.54 -0.3
1,362,421 - CA264_05850 0.64 +0.3
1,362,421 - CA264_05850 0.64 +0.2
1,362,486 - CA264_05850 0.73 -1.1
1,362,491 + CA264_05850 0.74 +0.3
1,362,492 - CA264_05850 0.74 +1.5
1,362,558 - CA264_05850 0.82 -0.5
1,362,608 - CA264_05850 0.89 -1.1
1,362,655 - +1.7
1,362,704 - -1.3
1,362,726 - -0.3
1,362,726 - -0.5
1,362,734 + -0.7
1,362,734 + -0.3
1,362,734 + -0.4
1,362,734 + -0.0
1,362,763 + +0.0
1,362,803 + -0.4
1,362,803 + +0.6
1,362,803 + +0.1
1,362,807 + +0.1
1,362,813 + +0.2
1,362,819 + -0.6
1,362,820 - -0.1
1,362,826 + +0.3
1,362,827 - -0.4
1,362,827 - -1.2
1,362,827 - -1.5
1,362,827 - +0.1
1,362,828 + +0.0
1,362,829 - +0.3
1,362,918 + CA264_05855 0.20 +1.0
1,362,974 + CA264_05855 0.32 -2.3
1,362,974 + CA264_05855 0.32 -0.2
1,362,975 - CA264_05855 0.33 -0.2
1,363,061 - CA264_05855 0.52 -0.5
1,363,061 - CA264_05855 0.52 +0.4
1,363,106 + CA264_05855 0.62 -0.1
1,363,107 - CA264_05855 0.62 -1.6
1,363,112 - CA264_05855 0.63 -0.2
1,363,112 - CA264_05855 0.63 -0.7
1,363,147 - CA264_05855 0.71 -1.5
1,363,147 - CA264_05855 0.71 -1.0
1,363,245 + +0.2
1,363,246 - +0.6
1,363,246 - +0.2
1,363,274 - -0.9
1,363,283 + +1.1
1,363,283 + -0.4
1,363,283 + -0.1
1,363,284 - +0.2
1,363,284 - -0.5
1,363,284 - +0.1
1,363,285 + -0.3
1,363,301 - -0.1
1,363,306 - +0.4
1,363,311 + -0.7
1,363,359 - +0.6
1,363,359 - -0.1
1,363,428 + -0.2
1,363,429 - +0.5
1,363,450 + -0.0
1,363,455 - -0.5
1,363,480 + +0.1
1,363,481 - -0.1
1,363,511 + +0.5
1,363,512 - -0.6
1,363,512 - -0.4
1,363,657 + +0.4
1,363,657 + -2.2
1,363,658 - -0.3
1,363,658 - +0.3
1,363,658 - +0.3
1,363,768 + CA264_05860 0.12 +0.6
1,363,807 + CA264_05860 0.14 -0.2
1,363,867 - CA264_05860 0.16 +0.3
1,363,933 - CA264_05860 0.19 +0.1
1,363,969 - CA264_05860 0.21 +0.0
1,363,969 - CA264_05860 0.21 -0.1
1,364,011 + CA264_05860 0.23 +1.0
1,364,012 - CA264_05860 0.23 +0.4
1,364,032 + CA264_05860 0.24 -0.0
1,364,032 + CA264_05860 0.24 +0.3
1,364,033 - CA264_05860 0.24 -0.1
1,364,033 - CA264_05860 0.24 +0.7
1,364,033 - CA264_05860 0.24 -0.1
1,364,038 + CA264_05860 0.24 -0.0
1,364,050 + CA264_05860 0.24 -0.1
1,364,050 + CA264_05860 0.24 -0.4
1,364,051 - CA264_05860 0.24 -0.5
1,364,053 + CA264_05860 0.25 +0.5
1,364,054 - CA264_05860 0.25 -0.0
1,364,054 - CA264_05860 0.25 -1.0
1,364,059 + CA264_05860 0.25 -0.1
1,364,059 + CA264_05860 0.25 +0.5
1,364,059 + CA264_05860 0.25 +0.9
1,364,059 + CA264_05860 0.25 +0.9
1,364,059 + CA264_05860 0.25 +0.6
1,364,059 + CA264_05860 0.25 -0.1
1,364,060 - CA264_05860 0.25 +0.3
1,364,093 + CA264_05860 0.26 -0.1
1,364,093 + CA264_05860 0.26 +0.5
1,364,118 + CA264_05860 0.27 +0.3
1,364,118 + CA264_05860 0.27 -1.5
1,364,119 - CA264_05860 0.27 -1.7
1,364,218 + CA264_05860 0.32 +0.7
1,364,239 + CA264_05860 0.33 +0.4

Or see this region's nucleotide sequence