Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS15935

Experiment: 5-Keto-D-Gluconic Acid potassium salt (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Keto-D-Gluconic Acid potassium salt (C)
3,157,640	+		ABIE40_RS15930	0.37	-0.4
3,157,640	+		ABIE40_RS15930	0.37	+0.6
3,157,799	+		ABIE40_RS15930	0.50	-0.3
3,157,799	+		ABIE40_RS15930	0.50	-0.2
3,157,800	-		ABIE40_RS15930	0.51	-0.7
3,157,800	-		ABIE40_RS15930	0.51	-0.6
3,157,800	-		ABIE40_RS15930	0.51	-0.1
3,157,800	-		ABIE40_RS15930	0.51	+1.5
3,157,827	+		ABIE40_RS15930	0.53	-0.2
3,157,827	+		ABIE40_RS15930	0.53	+0.6
3,157,827	+		ABIE40_RS15930	0.53	-1.6
3,157,827	+		ABIE40_RS15930	0.53	-1.2
3,157,828	-		ABIE40_RS15930	0.53	-2.5
3,157,828	-		ABIE40_RS15930	0.53	-1.3
3,157,828	-		ABIE40_RS15930	0.53	+0.8
3,157,828	-		ABIE40_RS15930	0.53	-1.4
3,157,915	+		ABIE40_RS15930	0.60	-0.6
3,157,916	-		ABIE40_RS15930	0.60	+1.6
3,157,979	+		ABIE40_RS15930	0.65	-0.1
3,157,979	+		ABIE40_RS15930	0.65	-0.6
3,157,979	+		ABIE40_RS15930	0.65	-1.3
3,157,979	+		ABIE40_RS15930	0.65	-0.5
3,157,979	+		ABIE40_RS15930	0.65	-1.2
3,157,979	+		ABIE40_RS15930	0.65	+0.8
3,157,979	+		ABIE40_RS15930	0.65	-1.5
3,157,980	-		ABIE40_RS15930	0.65	-0.1
3,157,980	-		ABIE40_RS15930	0.65	-0.7
3,158,021	+		ABIE40_RS15930	0.69	-0.4
3,158,022	-		ABIE40_RS15930	0.69	-0.7
3,158,022	-		ABIE40_RS15930	0.69	-0.9
3,158,127	-		ABIE40_RS15930	0.77	-0.8
3,158,277	+		ABIE40_RS15930	0.90	+0.5
3,158,277	+		ABIE40_RS15930	0.90	+0.8
3,158,277	+		ABIE40_RS15930	0.90	-1.7
3,158,277	+		ABIE40_RS15930	0.90	+1.6
3,158,277	+		ABIE40_RS15930	0.90	+1.8
3,158,277	+		ABIE40_RS15930	0.90	-1.3
3,158,277	+		ABIE40_RS15930	0.90	-0.7
3,158,278	-		ABIE40_RS15930	0.90	-1.5
3,158,278	-		ABIE40_RS15930	0.90	-0.2
3,158,280	+		ABIE40_RS15930	0.90	-0.8
3,158,329	-				+1.4
3,158,403	+				+1.0
3,158,403	+				-0.2
3,158,404	-				+0.8
3,158,404	-				-0.1
3,158,404	-				+0.5
3,158,461	+				+0.7
3,158,461	+				+0.8
3,158,461	+				+0.8
3,158,462	-				-0.7
3,158,462	-				-0.5
3,158,462	-				-0.2
3,158,462	-				+1.1
3,158,462	-				-1.1
3,158,486	+				-0.1
3,158,486	+				-2.7
3,158,486	+				-1.0
3,158,486	+				+0.8
3,158,487	-				+0.2
3,158,487	-				+0.8
3,158,487	-				-2.5
3,158,490	-				-0.3
3,158,501	-				-0.4
3,158,554	-				-0.2
3,158,554	-				+0.5
3,158,605	+				+0.2
3,158,605	+				-0.2
3,158,605	+				-0.6
3,158,605	+				-0.7
3,158,605	+				-0.5
3,158,605	+				-1.5
3,158,605	+				+0.7
3,158,605	+				-1.2
3,158,606	-				+0.6
3,158,606	-				-0.5
3,158,606	-				-2.6
3,158,606	-				-0.8
3,158,606	-				-0.9
3,158,606	-				+2.4
3,158,606	-				-0.9
3,158,606	-				+0.1
3,158,606	-				-0.3
3,158,606	-				+0.5
3,158,606	-				-1.2
3,158,785	+		ABIE40_RS15935	0.15	-1.0
3,158,785	+		ABIE40_RS15935	0.15	-0.2
3,158,785	+		ABIE40_RS15935	0.15	-0.6
3,158,786	-		ABIE40_RS15935	0.15	-0.8
3,158,786	-		ABIE40_RS15935	0.15	-0.5
3,158,786	-		ABIE40_RS15935	0.15	-1.9
3,158,910	+		ABIE40_RS15935	0.28	+2.0
3,158,910	+		ABIE40_RS15935	0.28	-0.9
3,158,911	-		ABIE40_RS15935	0.28	+0.6
3,158,911	-		ABIE40_RS15935	0.28	-1.7
3,158,911	-		ABIE40_RS15935	0.28	+0.2
3,158,911	-		ABIE40_RS15935	0.28	+0.8
3,158,911	-		ABIE40_RS15935	0.28	-1.7
3,158,976	+		ABIE40_RS15935	0.35	-0.5
3,158,977	-		ABIE40_RS15935	0.35	+0.5
3,159,114	+		ABIE40_RS15935	0.48	+0.5
3,159,114	+		ABIE40_RS15935	0.48	-0.3
3,159,115	-		ABIE40_RS15935	0.49	+3.1
3,159,115	-		ABIE40_RS15935	0.49	+0.0
3,159,115	-		ABIE40_RS15935	0.49	-1.0
3,159,164	+		ABIE40_RS15935	0.54	+0.8
3,159,164	+		ABIE40_RS15935	0.54	-0.9
3,159,164	+		ABIE40_RS15935	0.54	+1.4
3,159,165	-		ABIE40_RS15935	0.54	-1.7
3,159,194	+		ABIE40_RS15935	0.57	+0.7
3,159,194	+		ABIE40_RS15935	0.57	+0.1
3,159,194	+		ABIE40_RS15935	0.57	-0.6
3,159,194	+		ABIE40_RS15935	0.57	+0.3
3,159,195	-		ABIE40_RS15935	0.57	+0.4
3,159,195	-		ABIE40_RS15935	0.57	+0.2
3,159,195	-		ABIE40_RS15935	0.57	-0.2
3,159,195	-		ABIE40_RS15935	0.57	-1.2
3,159,201	+		ABIE40_RS15935	0.57	-0.1
3,159,201	+		ABIE40_RS15935	0.57	-1.4
3,159,201	+		ABIE40_RS15935	0.57	-1.5
3,159,201	+		ABIE40_RS15935	0.57	+0.5
3,159,202	-		ABIE40_RS15935	0.57	-0.8
3,159,202	-		ABIE40_RS15935	0.57	-1.5
3,159,202	-		ABIE40_RS15935	0.57	-1.5
3,159,202	-		ABIE40_RS15935	0.57	-1.5
3,159,288	-		ABIE40_RS15935	0.66	-0.4
3,159,288	-		ABIE40_RS15935	0.66	-0.8
3,159,396	+		ABIE40_RS15935	0.77	+0.2
3,159,397	-		ABIE40_RS15935	0.77	-1.6
3,159,397	-		ABIE40_RS15935	0.77	+0.5
3,159,397	-		ABIE40_RS15935	0.77	+1.4
3,159,399	-		ABIE40_RS15935	0.77	-0.4
3,159,428	+		ABIE40_RS15935	0.80	-0.8
3,159,595	+				-0.8
3,159,596	-				+0.4
3,159,596	-				-0.1
3,159,596	-				-0.4
3,159,596	-				-0.3
3,159,622	-				+3.4
3,159,622	-				+0.4
3,159,622	-				-0.5
3,159,693	-				+0.4
3,159,694	+				+1.8
3,159,694	+				-1.8
3,159,707	+				-1.7
3,159,707	+				-0.5
3,159,707	+				-1.2
3,159,782	+		ABIE40_RS15940	0.49	-0.8
3,159,782	+		ABIE40_RS15940	0.49	-2.4
3,159,783	-		ABIE40_RS15940	0.50	-0.4
3,159,783	-		ABIE40_RS15940	0.50	-0.3
3,159,901	-				+0.3
3,159,901	-				-0.2
3,159,921	+				+1.1
3,159,953	+				-0.0
3,159,988	+				-0.1
3,159,988	+				-1.1
3,159,989	-				-1.4
3,159,989	-				-0.5
3,160,037	-				-1.1
3,160,037	-				+0.1
3,160,037	-				-0.7
3,160,037	-				-0.5
3,160,190	+		ABIE40_RS15945	0.17	+0.1
3,160,190	+		ABIE40_RS15945	0.17	-2.5
3,160,191	-		ABIE40_RS15945	0.17	-0.1
3,160,191	-		ABIE40_RS15945	0.17	-0.5
3,160,210	+		ABIE40_RS15945	0.18	-1.3
3,160,210	+		ABIE40_RS15945	0.18	+0.3
3,160,210	+		ABIE40_RS15945	0.18	-0.2
3,160,211	-		ABIE40_RS15945	0.18	-0.2
3,160,267	-		ABIE40_RS15945	0.21	+1.3
3,160,301	+		ABIE40_RS15945	0.23	-1.1
3,160,458	-		ABIE40_RS15945	0.33	+0.6
3,160,527	-		ABIE40_RS15945	0.37	+1.1
3,160,547	-		ABIE40_RS15945	0.38	-0.6
3,160,552	+		ABIE40_RS15945	0.39	-0.2
3,160,552	+		ABIE40_RS15945	0.39	+0.2
3,160,590	-		ABIE40_RS15945	0.41	-0.1
3,160,590	-		ABIE40_RS15945	0.41	-0.2
3,160,590	-		ABIE40_RS15945	0.41	-1.0