Experiment: 5-Keto-D-Gluconic Acid potassium salt (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04335 and ABIE40_RS04340 overlap by 4 nucleotides ABIE40_RS04340 and ABIE40_RS04345 overlap by 4 nucleotides ABIE40_RS04345 and ABIE40_RS04350 overlap by 4 nucleotides
ABIE40_RS04335: ABIE40_RS04335 - DUF1499 domain-containing protein, at 856,993 to 857,904
_RS04335
ABIE40_RS04340: ABIE40_RS04340 - SDR family oxidoreductase, at 857,901 to 859,586
_RS04340
ABIE40_RS04345: ABIE40_RS04345 - DCC1-like thiol-disulfide oxidoreductase family protein, at 859,583 to 860,041
_RS04345
ABIE40_RS04350: ABIE40_RS04350 - MBL fold metallo-hydrolase, at 860,038 to 860,952
_RS04350
Position (kb) 857
858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 856.928 kb on - strand at 856.977 kb on - strand at 856.977 kb on - strand at 856.979 kb on - strand at 856.979 kb on - strand at 856.985 kb on + strand at 856.985 kb on + strand at 857.119 kb on + strand, within ABIE40_RS04335 at 857.119 kb on + strand, within ABIE40_RS04335 at 857.119 kb on + strand, within ABIE40_RS04335 at 857.119 kb on + strand, within ABIE40_RS04335 at 857.119 kb on + strand, within ABIE40_RS04335 at 857.119 kb on + strand, within ABIE40_RS04335 at 857.119 kb on + strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.120 kb on - strand, within ABIE40_RS04335 at 857.293 kb on + strand, within ABIE40_RS04335 at 857.293 kb on + strand, within ABIE40_RS04335 at 857.293 kb on + strand, within ABIE40_RS04335 at 857.293 kb on + strand, within ABIE40_RS04335 at 857.294 kb on - strand, within ABIE40_RS04335 at 857.294 kb on - strand, within ABIE40_RS04335 at 857.294 kb on - strand, within ABIE40_RS04335 at 857.294 kb on - strand, within ABIE40_RS04335 at 857.294 kb on - strand, within ABIE40_RS04335 at 857.314 kb on + strand, within ABIE40_RS04335 at 857.314 kb on + strand, within ABIE40_RS04335 at 857.314 kb on + strand, within ABIE40_RS04335 at 857.314 kb on + strand, within ABIE40_RS04335 at 857.314 kb on + strand, within ABIE40_RS04335 at 857.314 kb on + strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.315 kb on - strand, within ABIE40_RS04335 at 857.402 kb on + strand, within ABIE40_RS04335 at 857.403 kb on - strand, within ABIE40_RS04335 at 857.437 kb on + strand, within ABIE40_RS04335 at 857.659 kb on + strand, within ABIE40_RS04335 at 857.659 kb on + strand, within ABIE40_RS04335 at 857.924 kb on + strand at 857.926 kb on + strand at 857.926 kb on + strand at 857.927 kb on - strand at 857.927 kb on - strand at 857.927 kb on - strand at 858.005 kb on + strand at 858.005 kb on + strand at 858.006 kb on - strand at 858.006 kb on - strand at 858.006 kb on - strand at 858.254 kb on + strand, within ABIE40_RS04340 at 858.255 kb on - strand, within ABIE40_RS04340 at 858.349 kb on + strand, within ABIE40_RS04340 at 858.616 kb on - strand, within ABIE40_RS04340 at 858.656 kb on - strand, within ABIE40_RS04340 at 858.690 kb on + strand, within ABIE40_RS04340 at 858.691 kb on - strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.039 kb on + strand, within ABIE40_RS04340 at 859.040 kb on - strand, within ABIE40_RS04340 at 859.125 kb on - strand, within ABIE40_RS04340 at 859.175 kb on + strand, within ABIE40_RS04340 at 859.175 kb on + strand, within ABIE40_RS04340 at 859.175 kb on + strand, within ABIE40_RS04340 at 859.176 kb on - strand, within ABIE40_RS04340 at 859.176 kb on - strand, within ABIE40_RS04340 at 859.274 kb on - strand, within ABIE40_RS04340 at 859.274 kb on - strand, within ABIE40_RS04340 at 859.556 kb on + strand at 859.677 kb on + strand, within ABIE40_RS04345 at 859.678 kb on - strand, within ABIE40_RS04345 at 859.678 kb on - strand, within ABIE40_RS04345 at 859.839 kb on + strand, within ABIE40_RS04345 at 859.839 kb on + strand, within ABIE40_RS04345 at 859.840 kb on - strand, within ABIE40_RS04345 at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.019 kb on + strand at 860.020 kb on - strand at 860.020 kb on - strand at 860.020 kb on - strand at 860.020 kb on - strand at 860.054 kb on + strand at 860.118 kb on + strand at 860.119 kb on - strand at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.175 kb on - strand, within ABIE40_RS04350 at 860.247 kb on + strand, within ABIE40_RS04350 at 860.247 kb on + strand, within ABIE40_RS04350 at 860.248 kb on - strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.272 kb on + strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.273 kb on - strand, within ABIE40_RS04350 at 860.363 kb on + strand, within ABIE40_RS04350 at 860.363 kb on + strand, within ABIE40_RS04350 at 860.363 kb on + strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.364 kb on - strand, within ABIE40_RS04350 at 860.415 kb on + strand, within ABIE40_RS04350 at 860.446 kb on - strand, within ABIE40_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Keto-D-Gluconic Acid potassium salt (C) remove 856,928 - +0.5 856,977 - +2.2 856,977 - +0.1 856,979 - -0.5 856,979 - -0.6 856,985 + -0.5 856,985 + -2.2 857,119 + ABIE40_RS04335 0.14 +0.6 857,119 + ABIE40_RS04335 0.14 -0.4 857,119 + ABIE40_RS04335 0.14 -0.8 857,119 + ABIE40_RS04335 0.14 -0.1 857,119 + ABIE40_RS04335 0.14 -0.9 857,119 + ABIE40_RS04335 0.14 -2.1 857,119 + ABIE40_RS04335 0.14 -0.8 857,120 - ABIE40_RS04335 0.14 -0.3 857,120 - ABIE40_RS04335 0.14 +0.4 857,120 - ABIE40_RS04335 0.14 +0.1 857,120 - ABIE40_RS04335 0.14 -0.1 857,120 - ABIE40_RS04335 0.14 +1.3 857,120 - ABIE40_RS04335 0.14 +0.5 857,120 - ABIE40_RS04335 0.14 -1.0 857,120 - ABIE40_RS04335 0.14 +0.3 857,120 - ABIE40_RS04335 0.14 -0.1 857,120 - ABIE40_RS04335 0.14 +0.5 857,120 - ABIE40_RS04335 0.14 -0.6 857,293 + ABIE40_RS04335 0.33 +0.7 857,293 + ABIE40_RS04335 0.33 +2.7 857,293 + ABIE40_RS04335 0.33 +0.2 857,293 + ABIE40_RS04335 0.33 -1.8 857,294 - ABIE40_RS04335 0.33 -0.7 857,294 - ABIE40_RS04335 0.33 +0.0 857,294 - ABIE40_RS04335 0.33 -0.2 857,294 - ABIE40_RS04335 0.33 -0.6 857,294 - ABIE40_RS04335 0.33 -0.0 857,314 + ABIE40_RS04335 0.35 -2.5 857,314 + ABIE40_RS04335 0.35 -0.5 857,314 + ABIE40_RS04335 0.35 -0.0 857,314 + ABIE40_RS04335 0.35 +4.2 857,314 + ABIE40_RS04335 0.35 +0.0 857,314 + ABIE40_RS04335 0.35 -0.9 857,315 - ABIE40_RS04335 0.35 -2.6 857,315 - ABIE40_RS04335 0.35 +1.1 857,315 - ABIE40_RS04335 0.35 +1.5 857,315 - ABIE40_RS04335 0.35 +2.9 857,315 - ABIE40_RS04335 0.35 -1.3 857,315 - ABIE40_RS04335 0.35 -1.5 857,315 - ABIE40_RS04335 0.35 -1.8 857,402 + ABIE40_RS04335 0.45 -2.1 857,403 - ABIE40_RS04335 0.45 +1.0 857,437 + ABIE40_RS04335 0.49 -0.6 857,659 + ABIE40_RS04335 0.73 -0.7 857,659 + ABIE40_RS04335 0.73 +2.5 857,924 + -0.2 857,926 + -0.3 857,926 + +0.1 857,927 - +0.9 857,927 - +0.3 857,927 - +0.2 858,005 + -0.7 858,005 + -0.3 858,006 - -0.2 858,006 - +0.9 858,006 - +0.4 858,254 + ABIE40_RS04340 0.21 -0.1 858,255 - ABIE40_RS04340 0.21 +0.5 858,349 + ABIE40_RS04340 0.27 -1.3 858,616 - ABIE40_RS04340 0.42 +0.4 858,656 - ABIE40_RS04340 0.45 +0.5 858,690 + ABIE40_RS04340 0.47 +0.3 858,691 - ABIE40_RS04340 0.47 -1.0 859,039 + ABIE40_RS04340 0.67 -0.5 859,039 + ABIE40_RS04340 0.67 +0.4 859,039 + ABIE40_RS04340 0.67 -0.2 859,039 + ABIE40_RS04340 0.67 -0.1 859,039 + ABIE40_RS04340 0.67 -3.2 859,040 - ABIE40_RS04340 0.68 -1.2 859,125 - ABIE40_RS04340 0.73 -0.4 859,175 + ABIE40_RS04340 0.76 +0.1 859,175 + ABIE40_RS04340 0.76 -0.5 859,175 + ABIE40_RS04340 0.76 -0.0 859,176 - ABIE40_RS04340 0.76 -0.3 859,176 - ABIE40_RS04340 0.76 -0.5 859,274 - ABIE40_RS04340 0.81 -0.1 859,274 - ABIE40_RS04340 0.81 +0.1 859,556 + -2.3 859,677 + ABIE40_RS04345 0.20 +0.4 859,678 - ABIE40_RS04345 0.21 -1.6 859,678 - ABIE40_RS04345 0.21 -1.0 859,839 + ABIE40_RS04345 0.56 -0.1 859,839 + ABIE40_RS04345 0.56 +0.1 859,840 - ABIE40_RS04345 0.56 -2.3 860,019 + +0.9 860,019 + -1.3 860,019 + -0.1 860,019 + -0.9 860,019 + +0.8 860,019 + -1.4 860,020 - +0.5 860,020 - -2.6 860,020 - +0.1 860,020 - +1.1 860,054 + -1.4 860,118 + -0.9 860,119 - -0.7 860,175 - ABIE40_RS04350 0.15 -0.3 860,175 - ABIE40_RS04350 0.15 -1.8 860,175 - ABIE40_RS04350 0.15 +1.6 860,175 - ABIE40_RS04350 0.15 +0.3 860,175 - ABIE40_RS04350 0.15 -1.1 860,247 + ABIE40_RS04350 0.23 -0.2 860,247 + ABIE40_RS04350 0.23 -3.0 860,248 - ABIE40_RS04350 0.23 -1.1 860,272 + ABIE40_RS04350 0.26 -0.7 860,272 + ABIE40_RS04350 0.26 -2.9 860,272 + ABIE40_RS04350 0.26 -2.7 860,272 + ABIE40_RS04350 0.26 -1.5 860,272 + ABIE40_RS04350 0.26 +0.3 860,272 + ABIE40_RS04350 0.26 +0.2 860,273 - ABIE40_RS04350 0.26 +0.1 860,273 - ABIE40_RS04350 0.26 -1.7 860,273 - ABIE40_RS04350 0.26 -0.1 860,273 - ABIE40_RS04350 0.26 -0.4 860,363 + ABIE40_RS04350 0.36 -2.1 860,363 + ABIE40_RS04350 0.36 -0.7 860,363 + ABIE40_RS04350 0.36 -3.3 860,364 - ABIE40_RS04350 0.36 -0.2 860,364 - ABIE40_RS04350 0.36 -2.6 860,364 - ABIE40_RS04350 0.36 +0.5 860,364 - ABIE40_RS04350 0.36 -0.6 860,364 - ABIE40_RS04350 0.36 +1.2 860,364 - ABIE40_RS04350 0.36 +0.9 860,364 - ABIE40_RS04350 0.36 +0.1 860,415 + ABIE40_RS04350 0.41 -1.5 860,446 - ABIE40_RS04350 0.45 -1.3
Or see this region's nucleotide sequence