Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25935

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25930 and ABID97_RS25935 are separated by 72 nucleotidesABID97_RS25935 and ABID97_RS25940 are separated by 66 nucleotides ABID97_RS25930: ABID97_RS25930 - aspartate aminotransferase family protein, at 109,488 to 110,891 _RS25930 ABID97_RS25935: ABID97_RS25935 - Lrp/AsnC family transcriptional regulator, at 110,964 to 111,458 _RS25935 ABID97_RS25940: ABID97_RS25940 - LysR substrate-binding domain-containing protein, at 111,525 to 112,448 _RS25940 Position (kb) 110 111 112Strain fitness (log2 ratio) -1 0 1at 110.041 kb on - strand, within ABID97_RS25930at 110.377 kb on - strand, within ABID97_RS25930at 110.473 kb on - strand, within ABID97_RS25930at 111.117 kb on + strand, within ABID97_RS25935at 111.292 kb on - strand, within ABID97_RS25935at 111.292 kb on - strand, within ABID97_RS25935at 111.388 kb on - strand, within ABID97_RS25935at 111.511 kb on + strandat 111.512 kb on - strandat 111.732 kb on + strand, within ABID97_RS25940at 112.347 kb on + strand, within ABID97_RS25940at 112.348 kb on - strand, within ABID97_RS25940at 112.348 kb on - strand, within ABID97_RS25940at 112.356 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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110,041 - ABID97_RS25930 0.39 +0.1
110,377 - ABID97_RS25930 0.63 -0.4
110,473 - ABID97_RS25930 0.70 -0.1
111,117 + ABID97_RS25935 0.31 +0.3
111,292 - ABID97_RS25935 0.66 -0.5
111,292 - ABID97_RS25935 0.66 +0.2
111,388 - ABID97_RS25935 0.86 +0.3
111,511 + +1.0
111,512 - -0.3
111,732 + ABID97_RS25940 0.22 -0.2
112,347 + ABID97_RS25940 0.89 -0.4
112,348 - ABID97_RS25940 0.89 -0.7
112,348 - ABID97_RS25940 0.89 +0.2
112,356 + -0.7

Or see this region's nucleotide sequence